| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is cphA [H]
Identifier: 113475629
GI number: 113475629
Start: 3043880
End: 3046588
Strand: Direct
Name: cphA [H]
Synonym: Tery_1965
Alternate gene names: 113475629
Gene position: 3043880-3046588 (Clockwise)
Preceding gene: 113475628
Following gene: 113475631
Centisome position: 39.28
GC content: 39.24
Gene sequence:
>2709_bases ATGAAAATCCTCAAACTCCAGACATTACGTGGTCCAAATTATTGGAGCATACACCGCCATAAGCTGGTAGTTATGCGTCT AGATTTGGAAGATCTTTACGAAAAATATACATCTGACATCCCTGGTTTCTACAAAGGATTAACAGAAGTTCTACCAAGTT TGGTAGAACACCTTTGTTCGCCTGGAGTCAAGGGTGGTTTCCTAACTCGTGTGGAAAAAGGAACATTAATAGGCCATGTA ATCGAACACGTTGCCATAGAATTACAAGAGCTAGCAGGAATGCCAGTTGGTTTTGGTAGGACAAGGGAAACATCTACTAC AGGAGTATTCCAGGTAGTAATAGAATATGAAAATGAACAAGCAGGTCGTTATGCAGCACGAGCAGCAGTAAGGCTTTGCC AAAGTATTGTTGACACAGGTACATATCCAGCAACAGAATTACAGCAAGATTTAGAAGACCTTAAGGAATTAAAAAATCAG GCATCTTTAGGTCCAAGTACAGAAGCTATAGTTAAAGAAGCAGAAGCAAGAGGTATTCCTTGGACTCAACTAGGTGCTAG GTTTATGATTCAGTTTGGTTATGGGGTTAATCAAAAGAAAATTCAGGCAACCCTAAGTAACCAAACCGGAATTCTTGGTG TAGAACTTGCTTGTGACAAAGAAGGCACAAAAAGAATTCTCAAAGATGCAGGAGTACCAGTACCTCGTGGTACAGTTGCT CGTTATTTTGATGAGCTTCAAGATGCTATTGAATATGTCGGAGGCTATCCTATTGTCATTAAACCTCTAGACGGAAATCA TGGTCGTGGCATTACCATAGATGTTAAAAATTGGCAAGAGGCAGAAGAAGCATACGATTTAGCTAGAAAAGCTTCGAAAA CAAAAACTGTAATTGTTGAACGTTACTACACGGGCAAAGACCACCGAGTTTTAGTAGTAAATGGCAAAGTTGTAGCTGTA GCTGAACGAGTTCCAGCCCATGTGGTGGGAAATGGTAAGTCTACAATAGCGGAACTAATTGAAGAGACCAATAGAGATCC TCAAAGAGGGGATGGACATGATAACATCTTGACTCGAATAACGGTAGATAAGTCTGCCCTTGATATTCTAGGAAAACAGG GATACAGTATAGATTCAATACCTCTCAAAGGAAAAAAGTGCTTTTTAAGAGCAACGGCTAATCTAAGCACTGGTGGTATA GCAGTAGACCGCACTGATGAGATACACCCGGAAAATGTTTGGCTATTATCTAGAGTTGCTAAGATAATTGGTCTAGATAT TGCAGGTATAGATGTAGTTACTGAAGATATTTCTCAACCACTACGAGAAGTGGAAGGAGTTATAGTAGAGGTTAATGCTG CCCCTGGTTTCCGGATGCATGTTGCTCCTAGTAGAGGTCTAGCAAGAAATGTGGCGGGGGCAGTGATGGATATGTTATTC CCCGGATCAAAAAATGGACGAATACCAATATTGTCTGTTACTGGCACTAATGGAAAGACAACTACTACACGACTACTGGC TCATATTATTAAACAGACAGGTAAAGTAGTTGGATATACTACTACTGATGGTACTTATATTGGTGAGTATTTGGCTGAAA CTGGTGATAATACTGGACCTCAAAGTGCACATTTAATTCTTTCAGACCCTACAGTAGAGGTCGCTGTTTTAGAAACAGCA CGGGGTGGTATTTTGCGTTCTGGTTTAGGTTTTTCAAGTTGTGAGGTGGGAATAGTATTAAATGTAACTGCCGATCACTT GGGTATTGGAGATATAGATACCATAGAACAATTGGCTAAACTAAAAAGTGTAGTAGCTGAGTCGGTAATGCCAAAAGGAT ATGCAGTTTTGAATGCTGAAGACCCATTAGTCGCAGCTATGGCAGATAGAGTTAAAGGTCAAGTTGCTTATTTCTCAATG GATCCAAATAATGAATTGTTATTAAGACATACAGAAGCAGGGGGTCTGGCAGCAATTTATGAGAATGGCTATATTTCAAT TTTGAAAGGGGATTGGACTTTAAGAATTGAAAAAGCAGTTAATGTGCCAATTACAATGGCTGGTAAAGCTCCTTTTATGA TTGCTAATGCTCTGGCAGCTTGTTTGGCAGTTTTTACTCAAGGAGTAAAGATAGAGCATATTCGGAAAGGTTTGTCAACT TTTGTGGCTTCAGTGGATCAAACTCCAGGCCGGATGAATATGTTTAATATGGGTAGTTATCATGCTTTGGTAGATTATGC TCATAATCCTGCTAGCTATGAAGCATTAGGTGGATTTGTCAGAAATTGGCCGGGAAAACGAATTGGTGTGGTTGGTGGAC CAGGCGATCGCCGTGATGAAGACTTTGTTTCTCTTGGAGAACTAGCAGCAGATATCTTTGATGAAATTATTATTAAAGAA GATGATGATACTAGAGGACGACCTAGAGGGAATGCTGCTGAGCTTATTTGTCAGGGTGTAAAACAGTTTTTAAATGGAAT AAAAAATTCTGAATCAAAAGCTACTTATGAGTCAATATTAGATGAGACAGCAGCTATTAATACAGCTTTAGACAGAGCTC CAATTGATGGATTAGTAGTGATTTTACCAGAAAGTGTTAACAGAGCTATTAGTTTAATAGAAGGTCGTCACGTTATTCAA GATATTGAATTGCTTCAAGATAGTCAAAGAGAGCCTAAGGATCAAGAAGTTTTAAAAAGTTCAATTTAA
Upstream 100 bases:
>100_bases CCTCAAAAAAGTTTGTAGTAAACAGTCTAGTCAATGGTATGAGCTGAAATTAAAAATGCCATTGCTTCTCTGATTCTAAG CATTACCTTAAAATCCTCCT
Downstream 100 bases:
>100_bases CACTAAATTATATTAGATCTTCTTGGGAGTGAAGTATTATTGGAAACTGGGTTTATAGAAGATAGATATCAGTATGGTAG TTAATCTATCACTTTCCCCA
Product: cyanophycin synthetase
Products: NA
Alternate protein names: Cyanophycin synthase [H]
Number of amino acids: Translated: 902; Mature: 902
Protein sequence:
>902_residues MKILKLQTLRGPNYWSIHRHKLVVMRLDLEDLYEKYTSDIPGFYKGLTEVLPSLVEHLCSPGVKGGFLTRVEKGTLIGHV IEHVAIELQELAGMPVGFGRTRETSTTGVFQVVIEYENEQAGRYAARAAVRLCQSIVDTGTYPATELQQDLEDLKELKNQ ASLGPSTEAIVKEAEARGIPWTQLGARFMIQFGYGVNQKKIQATLSNQTGILGVELACDKEGTKRILKDAGVPVPRGTVA RYFDELQDAIEYVGGYPIVIKPLDGNHGRGITIDVKNWQEAEEAYDLARKASKTKTVIVERYYTGKDHRVLVVNGKVVAV AERVPAHVVGNGKSTIAELIEETNRDPQRGDGHDNILTRITVDKSALDILGKQGYSIDSIPLKGKKCFLRATANLSTGGI AVDRTDEIHPENVWLLSRVAKIIGLDIAGIDVVTEDISQPLREVEGVIVEVNAAPGFRMHVAPSRGLARNVAGAVMDMLF PGSKNGRIPILSVTGTNGKTTTTRLLAHIIKQTGKVVGYTTTDGTYIGEYLAETGDNTGPQSAHLILSDPTVEVAVLETA RGGILRSGLGFSSCEVGIVLNVTADHLGIGDIDTIEQLAKLKSVVAESVMPKGYAVLNAEDPLVAAMADRVKGQVAYFSM DPNNELLLRHTEAGGLAAIYENGYISILKGDWTLRIEKAVNVPITMAGKAPFMIANALAACLAVFTQGVKIEHIRKGLST FVASVDQTPGRMNMFNMGSYHALVDYAHNPASYEALGGFVRNWPGKRIGVVGGPGDRRDEDFVSLGELAADIFDEIIIKE DDDTRGRPRGNAAELICQGVKQFLNGIKNSESKATYESILDETAAINTALDRAPIDGLVVILPESVNRAISLIEGRHVIQ DIELLQDSQREPKDQEVLKSSI
Sequences:
>Translated_902_residues MKILKLQTLRGPNYWSIHRHKLVVMRLDLEDLYEKYTSDIPGFYKGLTEVLPSLVEHLCSPGVKGGFLTRVEKGTLIGHV IEHVAIELQELAGMPVGFGRTRETSTTGVFQVVIEYENEQAGRYAARAAVRLCQSIVDTGTYPATELQQDLEDLKELKNQ ASLGPSTEAIVKEAEARGIPWTQLGARFMIQFGYGVNQKKIQATLSNQTGILGVELACDKEGTKRILKDAGVPVPRGTVA RYFDELQDAIEYVGGYPIVIKPLDGNHGRGITIDVKNWQEAEEAYDLARKASKTKTVIVERYYTGKDHRVLVVNGKVVAV AERVPAHVVGNGKSTIAELIEETNRDPQRGDGHDNILTRITVDKSALDILGKQGYSIDSIPLKGKKCFLRATANLSTGGI AVDRTDEIHPENVWLLSRVAKIIGLDIAGIDVVTEDISQPLREVEGVIVEVNAAPGFRMHVAPSRGLARNVAGAVMDMLF PGSKNGRIPILSVTGTNGKTTTTRLLAHIIKQTGKVVGYTTTDGTYIGEYLAETGDNTGPQSAHLILSDPTVEVAVLETA RGGILRSGLGFSSCEVGIVLNVTADHLGIGDIDTIEQLAKLKSVVAESVMPKGYAVLNAEDPLVAAMADRVKGQVAYFSM DPNNELLLRHTEAGGLAAIYENGYISILKGDWTLRIEKAVNVPITMAGKAPFMIANALAACLAVFTQGVKIEHIRKGLST FVASVDQTPGRMNMFNMGSYHALVDYAHNPASYEALGGFVRNWPGKRIGVVGGPGDRRDEDFVSLGELAADIFDEIIIKE DDDTRGRPRGNAAELICQGVKQFLNGIKNSESKATYESILDETAAINTALDRAPIDGLVVILPESVNRAISLIEGRHVIQ DIELLQDSQREPKDQEVLKSSI >Mature_902_residues MKILKLQTLRGPNYWSIHRHKLVVMRLDLEDLYEKYTSDIPGFYKGLTEVLPSLVEHLCSPGVKGGFLTRVEKGTLIGHV IEHVAIELQELAGMPVGFGRTRETSTTGVFQVVIEYENEQAGRYAARAAVRLCQSIVDTGTYPATELQQDLEDLKELKNQ ASLGPSTEAIVKEAEARGIPWTQLGARFMIQFGYGVNQKKIQATLSNQTGILGVELACDKEGTKRILKDAGVPVPRGTVA RYFDELQDAIEYVGGYPIVIKPLDGNHGRGITIDVKNWQEAEEAYDLARKASKTKTVIVERYYTGKDHRVLVVNGKVVAV AERVPAHVVGNGKSTIAELIEETNRDPQRGDGHDNILTRITVDKSALDILGKQGYSIDSIPLKGKKCFLRATANLSTGGI AVDRTDEIHPENVWLLSRVAKIIGLDIAGIDVVTEDISQPLREVEGVIVEVNAAPGFRMHVAPSRGLARNVAGAVMDMLF PGSKNGRIPILSVTGTNGKTTTTRLLAHIIKQTGKVVGYTTTDGTYIGEYLAETGDNTGPQSAHLILSDPTVEVAVLETA RGGILRSGLGFSSCEVGIVLNVTADHLGIGDIDTIEQLAKLKSVVAESVMPKGYAVLNAEDPLVAAMADRVKGQVAYFSM DPNNELLLRHTEAGGLAAIYENGYISILKGDWTLRIEKAVNVPITMAGKAPFMIANALAACLAVFTQGVKIEHIRKGLST FVASVDQTPGRMNMFNMGSYHALVDYAHNPASYEALGGFVRNWPGKRIGVVGGPGDRRDEDFVSLGELAADIFDEIIIKE DDDTRGRPRGNAAELICQGVKQFLNGIKNSESKATYESILDETAAINTALDRAPIDGLVVILPESVNRAISLIEGRHVIQ DIELLQDSQREPKDQEVLKSSI
Specific function: Catalyzes the ATP-dependent polymerization of arginine and aspartate to multi-L-arginyl-poly-L-aspartic acid (cyanophycin; a water-insoluble reserve polymer) [H]
COG id: COG1181
COG function: function code M; D-alanine-D-alanine ligase and related ATP-grasp enzymes
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ATP-grasp domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011761 - InterPro: IPR013651 - InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR011810 - InterPro: IPR004101 - InterPro: IPR013221 [H]
Pfam domain/function: PF02875 Mur_ligase_C; PF08245 Mur_ligase_M; PF08443 RimK [H]
EC number: =6.3.2.29; =6.3.2.30 [H]
Molecular weight: Translated: 97893; Mature: 97893
Theoretical pI: Translated: 5.87; Mature: 5.87
Prosite motif: PS50975 ATP_GRASP ; PS01011 FOLYLPOLYGLU_SYNT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKILKLQTLRGPNYWSIHRHKLVVMRLDLEDLYEKYTSDIPGFYKGLTEVLPSLVEHLCS CCEEEEEECCCCCEEEEECEEEEEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC PGVKGGFLTRVEKGTLIGHVIEHVAIELQELAGMPVGFGRTRETSTTGVFQVVIEYENEQ CCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCC AGRYAARAAVRLCQSIVDTGTYPATELQQDLEDLKELKNQASLGPSTEAIVKEAEARGIP HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC WTQLGARFMIQFGYGVNQKKIQATLSNQTGILGVELACDKEGTKRILKDAGVPVPRGTVA HHHHHHEEEEEECCCCCHHHHHEEECCCCCEEEEEEEECCHHHHHHHHHCCCCCCCCHHH RYFDELQDAIEYVGGYPIVIKPLDGNHGRGITIDVKNWQEAEEAYDLARKASKTKTVIVE HHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEE RYYTGKDHRVLVVNGKVVAVAERVPAHVVGNGKSTIAELIEETNRDPQRGDGHDNILTRI EEECCCCCEEEEECCEEEEEECCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCEEEEE TVDKSALDILGKQGYSIDSIPLKGKKCFLRATANLSTGGIAVDRTDEIHPENVWLLSRVA EECHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEECCCCCCCCCHHHHHHHHH KIIGLDIAGIDVVTEDISQPLREVEGVIVEVNAAPGFRMHVAPSRGLARNVAGAVMDMLF HHHCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHC PGSKNGRIPILSVTGTNGKTTTTRLLAHIIKQTGKVVGYTTTDGTYIGEYLAETGDNTGP CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCC QSAHLILSDPTVEVAVLETARGGILRSGLGFSSCEVGIVLNVTADHLGIGDIDTIEQLAK CCEEEEEECCCEEEEEEECCCCCCEECCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHH LKSVVAESVMPKGYAVLNAEDPLVAAMADRVKGQVAYFSMDPNNELLLRHTEAGGLAAIY HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCEEEEEEECCCCCEEEEEECCCCEEEEE ENGYISILKGDWTLRIEKAVNVPITMAGKAPFMIANALAACLAVFTQGVKIEHIRKGLST ECCEEEEEECCEEEEEEEECCCCEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH FVASVDQTPGRMNMFNMGSYHALVDYAHNPASYEALGGFVRNWPGKRIGVVGGPGDRRDE HHHHHCCCCCCCEEECCCCHHEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCH DFVSLGELAADIFDEIIIKEDDDTRGRPRGNAAELICQGVKQFLNGIKNSESKATYESIL HHHHHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH DETAAINTALDRAPIDGLVVILPESVNRAISLIEGRHVIQDIELLQDSQREPKDQEVLKS HHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH SI CC >Mature Secondary Structure MKILKLQTLRGPNYWSIHRHKLVVMRLDLEDLYEKYTSDIPGFYKGLTEVLPSLVEHLCS CCEEEEEECCCCCEEEEECEEEEEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC PGVKGGFLTRVEKGTLIGHVIEHVAIELQELAGMPVGFGRTRETSTTGVFQVVIEYENEQ CCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCC AGRYAARAAVRLCQSIVDTGTYPATELQQDLEDLKELKNQASLGPSTEAIVKEAEARGIP HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC WTQLGARFMIQFGYGVNQKKIQATLSNQTGILGVELACDKEGTKRILKDAGVPVPRGTVA HHHHHHEEEEEECCCCCHHHHHEEECCCCCEEEEEEEECCHHHHHHHHHCCCCCCCCHHH RYFDELQDAIEYVGGYPIVIKPLDGNHGRGITIDVKNWQEAEEAYDLARKASKTKTVIVE HHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEE RYYTGKDHRVLVVNGKVVAVAERVPAHVVGNGKSTIAELIEETNRDPQRGDGHDNILTRI EEECCCCCEEEEECCEEEEEECCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCEEEEE TVDKSALDILGKQGYSIDSIPLKGKKCFLRATANLSTGGIAVDRTDEIHPENVWLLSRVA EECHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEECCCCCCCCCHHHHHHHHH KIIGLDIAGIDVVTEDISQPLREVEGVIVEVNAAPGFRMHVAPSRGLARNVAGAVMDMLF HHHCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHC PGSKNGRIPILSVTGTNGKTTTTRLLAHIIKQTGKVVGYTTTDGTYIGEYLAETGDNTGP CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCC QSAHLILSDPTVEVAVLETARGGILRSGLGFSSCEVGIVLNVTADHLGIGDIDTIEQLAK CCEEEEEECCCEEEEEEECCCCCCEECCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHH LKSVVAESVMPKGYAVLNAEDPLVAAMADRVKGQVAYFSMDPNNELLLRHTEAGGLAAIY HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCEEEEEEECCCCCEEEEEECCCCEEEEE ENGYISILKGDWTLRIEKAVNVPITMAGKAPFMIANALAACLAVFTQGVKIEHIRKGLST ECCEEEEEECCEEEEEEEECCCCEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH FVASVDQTPGRMNMFNMGSYHALVDYAHNPASYEALGGFVRNWPGKRIGVVGGPGDRRDE HHHHHCCCCCCCEEECCCCHHEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCH DFVSLGELAADIFDEIIIKEDDDTRGRPRGNAAELICQGVKQFLNGIKNSESKATYESIL HHHHHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH DETAAINTALDRAPIDGLVVILPESVNRAISLIEGRHVIQDIELLQDSQREPKDQEVLKS HHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH SI CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9652408 [H]