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The map label for this gene is 113475608

Identifier: 113475608

GI number: 113475608

Start: 3008623

End: 3010032

Strand: Direct

Name: 113475608

Synonym: Tery_1942

Alternate gene names: NA

Gene position: 3008623-3010032 (Clockwise)

Preceding gene: 113475605

Following gene: 113475611

Centisome position: 38.82

GC content: 31.7

Gene sequence:

>1410_bases
GTGTATATAAAAGTAGCAAAAGTGAATATTTTAGTAGAAAATTTAGGAATTCCTAGAATGCCATCTCATTTAACATTACG
ACCCTATCAGGAACAAGCTATTAATAATTGGTTTGCTAATCGAGGTAGGGGCATTTTAAAGATGGCAACTGGTACTGGTA
AAACAATAACTGCTTTAGCGATCGCTACTCAACTTTATCAAAAAATTAGCTTACAAGTATTAATAGTAGTCTGTCCTTAT
CGTCACTTAGTAACTCAATGGGGAAGAGAATGTGAAAAATTTGCCTTCCAACCAATTCTAGCTTTTGAGAATGTAAATGC
TTGGCAAAATCAACTTTCTACCATACTTTATAACATTCACTCTGGTAATAAAAAATTTATTTCTATTATTACTACTAACT
CTACTTTTATCTCAGATAGTTTTCAATCTCAGCTTAAATATTTTCCTGAAAAAACTTTAATTATTGGCGATGAAGCTCAT
CATTTAGGTTCCCCAAAATTAGAGAAAAGCTTACCAAAAAATTTTGGCTTAAGACTCGCCCTATCAGCTACCCCAGAAAG
ATATTTTGACAGCCAAGGAACTACAGCAATTTTAGATTATTTTGGTCAAGTATTGCAACCAGAACTAACTTTAGCTAATG
CCATTCAACAAGGTGCTTTAGCTCGTTATCTTTATTATCCAATTTTAGTAGAGTTGACTGAATCAGAAAGTCGAGATTAT
GTCAAACTAACCTCTAAAATTGGTTGGGCATTATTATTGTCAGAAAAAAGAAACGTAAAAATAGAGAAAGAAGATTTAAC
AGCTTTATTAATGCAGCGTTCTCGATTAATTGCTTCTGCAAAAAACAAATTGACGGCATTAAAAAAATTAATGCTAAATC
GTTTACAAACAACTCATACCTTATTTTATTGTGGAGATGGATGGGTAGAAAAAAACAATATTTCAAATTTACGACAAATG
GAAGCAGTAGTAAAAGTATTAGGATCAGAATTAGGTTATCGTGTTAATACTTATACCTCTGAAACTTCGATTAAAACAAG
AGAAAAGTTAAGAAAACAATTTGAAAATGGAGAATTACAAGGTTTAGTAGCAATTCGTTGTTTAGATGAAGGAATAGATA
TACCAGCAATTAAAAATGCAGTTATTTTAGCAAGCAGTCAAAACCCCCGACAATTTATTCAGAGAAGAGGTAGAATTTTA
CGACCTCATTCTAGTAAAGAAAGGGCAACTTTATTTGATATGATTGTTTTGCCTCCAGATATGGGTAGAAGTACCTTAGC
AATAGAACGAAATTTACTCAAAAAGGAGTTAAAACGTTTCTTAGAATTTGCTGATTTAGCAGATAATGCTGGAGAAGCTA
GGGTAAAACTATTAAGCATCCAAAAAAAATACGGATTATTAGATATTTAA

Upstream 100 bases:

>100_bases
TATAAAATATTATTTAGTAAATTTATTTAATTATCATAAAGTAAGAGTAAAAACTATTACTAATTGACGGCTAGCAATAG
ATTTAATTTATCAAAAAGTA

Downstream 100 bases:

>100_bases
CTCCGATAAATCTGTAACTAAATTATATCTATATTATATATCGTGTTTCAATACCTAAATTTTCTCTAACTGTATTACTT
CCTATCTGTACCAGAATAAT

Product: type III restriction enzyme, res subunit

Products: NA

Alternate protein names: Type III Restriction Res Subunit; DNA Repair Helicase; DNA Repair Helicase RAD; DNA Repair Helicase Rad; Type III Restriction Res Subunit Family; Helicase Domain-Containing Protein; DNA Repair Protein RAD; DNA-Repair Protein; Superfamily II DNA/RNA Helicase; DNA-Repair Helicase; Helicase-Like Protein; Helicase DNA Repair; Phage Related Helicase; XPB/RAD25-Related Helicase; DNA/RNA Helicase; Type III Restriction- System Subunit Res; RAD25-Type DNA Repair Helicase; Restriction; DEAD/DEAH Box Helicase Domain-Containing Protein; Helicase Domain Protein; DNA Repair Protein Rad

Number of amino acids: Translated: 469; Mature: 469

Protein sequence:

>469_residues
MYIKVAKVNILVENLGIPRMPSHLTLRPYQEQAINNWFANRGRGILKMATGTGKTITALAIATQLYQKISLQVLIVVCPY
RHLVTQWGRECEKFAFQPILAFENVNAWQNQLSTILYNIHSGNKKFISIITTNSTFISDSFQSQLKYFPEKTLIIGDEAH
HLGSPKLEKSLPKNFGLRLALSATPERYFDSQGTTAILDYFGQVLQPELTLANAIQQGALARYLYYPILVELTESESRDY
VKLTSKIGWALLLSEKRNVKIEKEDLTALLMQRSRLIASAKNKLTALKKLMLNRLQTTHTLFYCGDGWVEKNNISNLRQM
EAVVKVLGSELGYRVNTYTSETSIKTREKLRKQFENGELQGLVAIRCLDEGIDIPAIKNAVILASSQNPRQFIQRRGRIL
RPHSSKERATLFDMIVLPPDMGRSTLAIERNLLKKELKRFLEFADLADNAGEARVKLLSIQKKYGLLDI

Sequences:

>Translated_469_residues
MYIKVAKVNILVENLGIPRMPSHLTLRPYQEQAINNWFANRGRGILKMATGTGKTITALAIATQLYQKISLQVLIVVCPY
RHLVTQWGRECEKFAFQPILAFENVNAWQNQLSTILYNIHSGNKKFISIITTNSTFISDSFQSQLKYFPEKTLIIGDEAH
HLGSPKLEKSLPKNFGLRLALSATPERYFDSQGTTAILDYFGQVLQPELTLANAIQQGALARYLYYPILVELTESESRDY
VKLTSKIGWALLLSEKRNVKIEKEDLTALLMQRSRLIASAKNKLTALKKLMLNRLQTTHTLFYCGDGWVEKNNISNLRQM
EAVVKVLGSELGYRVNTYTSETSIKTREKLRKQFENGELQGLVAIRCLDEGIDIPAIKNAVILASSQNPRQFIQRRGRIL
RPHSSKERATLFDMIVLPPDMGRSTLAIERNLLKKELKRFLEFADLADNAGEARVKLLSIQKKYGLLDI
>Mature_469_residues
MYIKVAKVNILVENLGIPRMPSHLTLRPYQEQAINNWFANRGRGILKMATGTGKTITALAIATQLYQKISLQVLIVVCPY
RHLVTQWGRECEKFAFQPILAFENVNAWQNQLSTILYNIHSGNKKFISIITTNSTFISDSFQSQLKYFPEKTLIIGDEAH
HLGSPKLEKSLPKNFGLRLALSATPERYFDSQGTTAILDYFGQVLQPELTLANAIQQGALARYLYYPILVELTESESRDY
VKLTSKIGWALLLSEKRNVKIEKEDLTALLMQRSRLIASAKNKLTALKKLMLNRLQTTHTLFYCGDGWVEKNNISNLRQM
EAVVKVLGSELGYRVNTYTSETSIKTREKLRKQFENGELQGLVAIRCLDEGIDIPAIKNAVILASSQNPRQFIQRRGRIL
RPHSSKERATLFDMIVLPPDMGRSTLAIERNLLKKELKRFLEFADLADNAGEARVKLLSIQKKYGLLDI

Specific function: Unknown

COG id: COG1061

COG function: function code KL; DNA or RNA helicases of superfamily II

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53277; Mature: 53277

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYIKVAKVNILVENLGIPRMPSHLTLRPYQEQAINNWFANRGRGILKMATGTGKTITALA
CEEEEEEEEEEEECCCCCCCCCCCEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
IATQLYQKISLQVLIVVCPYRHLVTQWGRECEKFAFQPILAFENVNAWQNQLSTILYNIH
HHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHHCHHHEECCCHHHHHHHHHHHEEEE
SGNKKFISIITTNSTFISDSFQSQLKYFPEKTLIIGDEAHHLGSPKLEKSLPKNFGLRLA
CCCCEEEEEEEECCCEEHHHHHHHHHHCCCCEEEECCCHHHCCCCHHHHHCCCCCCEEEE
LSATPERYFDSQGTTAILDYFGQVLQPELTLANAIQQGALARYLYYPILVELTESESRDY
EECCCHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCH
VKLTSKIGWALLLSEKRNVKIEKEDLTALLMQRSRLIASAKNKLTALKKLMLNRLQTTHT
HHHHHHCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
LFYCGDGWVEKNNISNLRQMEAVVKVLGSELGYRVNTYTSETSIKTREKLRKQFENGELQ
EEEECCCEEECCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHCCCCCC
GLVAIRCLDEGIDIPAIKNAVILASSQNPRQFIQRRGRILRPHSSKERATLFDMIVLPPD
EEEEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHCCCEECCCCCCCHHEEEEEEEECCC
MGRSTLAIERNLLKKELKRFLEFADLADNAGEARVKLLSIQKKYGLLDI
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHCCCCCC
>Mature Secondary Structure
MYIKVAKVNILVENLGIPRMPSHLTLRPYQEQAINNWFANRGRGILKMATGTGKTITALA
CEEEEEEEEEEEECCCCCCCCCCCEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
IATQLYQKISLQVLIVVCPYRHLVTQWGRECEKFAFQPILAFENVNAWQNQLSTILYNIH
HHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHHCHHHEECCCHHHHHHHHHHHEEEE
SGNKKFISIITTNSTFISDSFQSQLKYFPEKTLIIGDEAHHLGSPKLEKSLPKNFGLRLA
CCCCEEEEEEEECCCEEHHHHHHHHHHCCCCEEEECCCHHHCCCCHHHHHCCCCCCEEEE
LSATPERYFDSQGTTAILDYFGQVLQPELTLANAIQQGALARYLYYPILVELTESESRDY
EECCCHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCH
VKLTSKIGWALLLSEKRNVKIEKEDLTALLMQRSRLIASAKNKLTALKKLMLNRLQTTHT
HHHHHHCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
LFYCGDGWVEKNNISNLRQMEAVVKVLGSELGYRVNTYTSETSIKTREKLRKQFENGELQ
EEEECCCEEECCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHCCCCCC
GLVAIRCLDEGIDIPAIKNAVILASSQNPRQFIQRRGRILRPHSSKERATLFDMIVLPPD
EEEEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHCCCEECCCCCCCHHEEEEEEEECCC
MGRSTLAIERNLLKKELKRFLEFADLADNAGEARVKLLSIQKKYGLLDI
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA