| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475567
Identifier: 113475567
GI number: 113475567
Start: 2926396
End: 2927916
Strand: Direct
Name: 113475567
Synonym: Tery_1900
Alternate gene names: NA
Gene position: 2926396-2927916 (Clockwise)
Preceding gene: 113475566
Following gene: 113475569
Centisome position: 37.76
GC content: 38.07
Gene sequence:
>1521_bases ATGATTAATGATAACAGCCAAAATCAGGAAACAAATTTTTGGATATGCAATGGAGAGGAAAAAAACCTGCCTCATCCCCC GCAAATGCTTCATTACGGTGATGAGTGTCCTATTTGCCACAATGTCAAAAAAATCAAACGGAACCCACCTCCTCCAAACC CAGACACCATTAATATTACTAGACCAACCGATTTTGAAGTACCCCCAGAGGTCGACACCAATAGTATTAAAGGTACTAGA CCAACTGCTTCTCAAGTATCCCCAACAGGACAAAAGTCAAAACGCGACTGGCCTCTTGTTGGGGCACTTACGATTTTGAA CCTGGGGAGTGCATTTACGACTGTTCGTGGTGCGTCGCAAATTCTCCCGAGTTTTGTCGCTTATCCTATGGGTATTACTA TTCAGGGAGTGCTATTTGCCTTAATTGCTCGTTTATTCCTGAAACACGCCCCCTTAATTAAATGGGTAGTTGTAGGCTGC TTTTCAACTTTTAGCGTTTACACTAGCTTTTTTGCTTACTATGATTTACTAAATCGAGAGACACGGGAAAAGACTCGTAT TGAGCTAGCTAATTCTGGTCATCAAAGCTTAGTAGGAGAATTCTTTACCCCGATTCAAAATAAAGTTAATTCCTTGGAAA GCGAGATAGGTATTATTAACAAAAAAATAGAGAAAGAAACTCAAGGAGAGAGGGGAGGAAGACCAAAAGGTTGTGGAAAA GTGTGTCAGCAACTAAAAGAAGAAAGAGAAATACTCGAAGAACAAAAAGCTCAACTTAAACCATTAGTCAACCGCTTACA GCCTTTATTTAACTACAATGTGGAAGGTAAGTCACCAAAAGAAATTTTTGACACTGACTTCAAAGCTTTATCTAAAGTTG GGGAAAATTGTTTACCAAAAGAGCTGTTATCACAGCTAGAGATTACTTGTTTGCCCGATCAATATTTGAAGGCTTTAAAC CCACAAAATTCTGAAAATTACGAAAGGCTAAGATTGACATACATCGATCCAGATCTAGAGGTTGATTTTCTTGCGCCCAT TCTTAAAGTCATGAAAGGTGAAGGTTCTGCCATAGCATCTGTCATTATGGCTTTGCTAATTGATGGCTGTATCATTTTGT TAGGAATTGGTGTTGAAATTCGCCCCCAGGTAACTCGTCAACGACAACAAACATTGACCTTGCAAATAAAAGATGGTAAA ATTGTGGAGTTTTTAAACCTGTTACTATCGAAATCAGAAAATGAAACTATTGAAATAGAAAAAAGCGATAACAATAAAGA TGAATACCAAAATTTGCTCACTTGGCTTTCTGTAAACACTCGATGGATTTGGCAAGATGAAGATAAAAGCTGGTACTTTC GATCTTCCAGTAGTAAAGAGAATTTTCAGAAATGGTTGATAAATCAGATAAATTTGCAAAATCAGGCTCGGGCTAGTACG AATTTATTGGAGTCCTGGAAGAAAAAGCCTCCAGAATATTTTGTGCTTGAGATGCCAATAGTTTCAAAAGATCAGGATTA A
Upstream 100 bases:
>100_bases CCATTATAAGAAGTGTAGCCAACAGGGTAACTAGGCTTTTTGTTCAGCTTTAAGGTAGTGCAAGTTAATAAAAACTTAGT CAAATTGGAGTTTTTTTTAA
Downstream 100 bases:
>100_bases GTTTGGCAGAGATTGCTTCCTACTTACTAAGGTACACTTGTGCGGGCAATATGCCCGCAATAGCAAGATAGAAGTTTTAA TATCTGTACCTCATATACTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 506; Mature: 506
Protein sequence:
>506_residues MINDNSQNQETNFWICNGEEKNLPHPPQMLHYGDECPICHNVKKIKRNPPPPNPDTINITRPTDFEVPPEVDTNSIKGTR PTASQVSPTGQKSKRDWPLVGALTILNLGSAFTTVRGASQILPSFVAYPMGITIQGVLFALIARLFLKHAPLIKWVVVGC FSTFSVYTSFFAYYDLLNRETREKTRIELANSGHQSLVGEFFTPIQNKVNSLESEIGIINKKIEKETQGERGGRPKGCGK VCQQLKEEREILEEQKAQLKPLVNRLQPLFNYNVEGKSPKEIFDTDFKALSKVGENCLPKELLSQLEITCLPDQYLKALN PQNSENYERLRLTYIDPDLEVDFLAPILKVMKGEGSAIASVIMALLIDGCIILLGIGVEIRPQVTRQRQQTLTLQIKDGK IVEFLNLLLSKSENETIEIEKSDNNKDEYQNLLTWLSVNTRWIWQDEDKSWYFRSSSSKENFQKWLINQINLQNQARAST NLLESWKKKPPEYFVLEMPIVSKDQD
Sequences:
>Translated_506_residues MINDNSQNQETNFWICNGEEKNLPHPPQMLHYGDECPICHNVKKIKRNPPPPNPDTINITRPTDFEVPPEVDTNSIKGTR PTASQVSPTGQKSKRDWPLVGALTILNLGSAFTTVRGASQILPSFVAYPMGITIQGVLFALIARLFLKHAPLIKWVVVGC FSTFSVYTSFFAYYDLLNRETREKTRIELANSGHQSLVGEFFTPIQNKVNSLESEIGIINKKIEKETQGERGGRPKGCGK VCQQLKEEREILEEQKAQLKPLVNRLQPLFNYNVEGKSPKEIFDTDFKALSKVGENCLPKELLSQLEITCLPDQYLKALN PQNSENYERLRLTYIDPDLEVDFLAPILKVMKGEGSAIASVIMALLIDGCIILLGIGVEIRPQVTRQRQQTLTLQIKDGK IVEFLNLLLSKSENETIEIEKSDNNKDEYQNLLTWLSVNTRWIWQDEDKSWYFRSSSSKENFQKWLINQINLQNQARAST NLLESWKKKPPEYFVLEMPIVSKDQD >Mature_506_residues MINDNSQNQETNFWICNGEEKNLPHPPQMLHYGDECPICHNVKKIKRNPPPPNPDTINITRPTDFEVPPEVDTNSIKGTR PTASQVSPTGQKSKRDWPLVGALTILNLGSAFTTVRGASQILPSFVAYPMGITIQGVLFALIARLFLKHAPLIKWVVVGC FSTFSVYTSFFAYYDLLNRETREKTRIELANSGHQSLVGEFFTPIQNKVNSLESEIGIINKKIEKETQGERGGRPKGCGK VCQQLKEEREILEEQKAQLKPLVNRLQPLFNYNVEGKSPKEIFDTDFKALSKVGENCLPKELLSQLEITCLPDQYLKALN PQNSENYERLRLTYIDPDLEVDFLAPILKVMKGEGSAIASVIMALLIDGCIILLGIGVEIRPQVTRQRQQTLTLQIKDGK IVEFLNLLLSKSENETIEIEKSDNNKDEYQNLLTWLSVNTRWIWQDEDKSWYFRSSSSKENFQKWLINQINLQNQARAST NLLESWKKKPPEYFVLEMPIVSKDQD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57671; Mature: 57671
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MINDNSQNQETNFWICNGEEKNLPHPPQMLHYGDECPICHNVKKIKRNPPPPNPDTINIT CCCCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCHHHHHHHHHCCCCCCCCCEEEEE RPTDFEVPPEVDTNSIKGTRPTASQVSPTGQKSKRDWPLVGALTILNLGSAFTTVRGASQ CCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHH ILPSFVAYPMGITIQGVLFALIARLFLKHAPLIKWVVVGCFSTFSVYTSFFAYYDLLNRE HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TREKTRIELANSGHQSLVGEFFTPIQNKVNSLESEIGIINKKIEKETQGERGGRPKGCGK HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH VCQQLKEEREILEEQKAQLKPLVNRLQPLFNYNVEGKSPKEIFDTDFKALSKVGENCLPK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHH ELLSQLEITCLPDQYLKALNPQNSENYERLRLTYIDPDLEVDFLAPILKVMKGEGSAIAS HHHHHCCEEECCHHHHHHCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHH VIMALLIDGCIILLGIGVEIRPQVTRQRQQTLTLQIKDGKIVEFLNLLLSKSENETIEIE HHHHHHHHHHHHHHCCCCEECHHHHHHHHHEEEEEECCCHHHHHHHHHHCCCCCCEEEEE KSDNNKDEYQNLLTWLSVNTRWIWQDEDKSWYFRSSSSKENFQKWLINQINLQNQARAST CCCCCHHHHHHHHHHHCCCEEEEEECCCCCEEEECCCCHHHHHHHHHHHHCCCHHHHHHH NLLESWKKKPPEYFVLEMPIVSKDQD HHHHHHHCCCCCEEEEECCCCCCCCC >Mature Secondary Structure MINDNSQNQETNFWICNGEEKNLPHPPQMLHYGDECPICHNVKKIKRNPPPPNPDTINIT CCCCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCHHHHHHHHHCCCCCCCCCEEEEE RPTDFEVPPEVDTNSIKGTRPTASQVSPTGQKSKRDWPLVGALTILNLGSAFTTVRGASQ CCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHH ILPSFVAYPMGITIQGVLFALIARLFLKHAPLIKWVVVGCFSTFSVYTSFFAYYDLLNRE HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TREKTRIELANSGHQSLVGEFFTPIQNKVNSLESEIGIINKKIEKETQGERGGRPKGCGK HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH VCQQLKEEREILEEQKAQLKPLVNRLQPLFNYNVEGKSPKEIFDTDFKALSKVGENCLPK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHH ELLSQLEITCLPDQYLKALNPQNSENYERLRLTYIDPDLEVDFLAPILKVMKGEGSAIAS HHHHHCCEEECCHHHHHHCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHH VIMALLIDGCIILLGIGVEIRPQVTRQRQQTLTLQIKDGKIVEFLNLLLSKSENETIEIE HHHHHHHHHHHHHHCCCCEECHHHHHHHHHEEEEEECCCHHHHHHHHHHCCCCCCEEEEE KSDNNKDEYQNLLTWLSVNTRWIWQDEDKSWYFRSSSSKENFQKWLINQINLQNQARAST CCCCCHHHHHHHHHHHCCCEEEEEECCCCCEEEECCCCHHHHHHHHHHHHCCCHHHHHHH NLLESWKKKPPEYFVLEMPIVSKDQD HHHHHHHCCCCCEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA