| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475436
Identifier: 113475436
GI number: 113475436
Start: 2685686
End: 2687011
Strand: Direct
Name: 113475436
Synonym: Tery_1764
Alternate gene names: NA
Gene position: 2685686-2687011 (Clockwise)
Preceding gene: 113475434
Following gene: 113475438
Centisome position: 34.65
GC content: 38.61
Gene sequence:
>1326_bases ATGACTACTAAAAAACCAAAAATTATTGTTATAGATGACGATCCCACAGGTTCCCAAACTGTTCATAGCTGCCTACTCCT AACCAAGTGGGATATAGAAACCCTCAAATTAGGATTACTTGACGAATCTCCCATATTTTTTATCCTCTCAAATACTCGCG CTCTGACTCCCGAACAAGCAGCAACTGTAACACGAGAAATCACACAAAATCTGACAGAAGCGATCGCTCAATCAAACATT CAAGATTTTTTAGTTGTCAGTCGTTCCGACTCTACTCTACGGGGTCACTACCCAATAGAAACAGATACTATTGCAGCAGA ACTAGGTCAGTTTGATGCTCATTTCCTAATTCCAGCATTTTTTGAATGTGGAAGAATTACCCGTAACAGTACCCACTATT TAATAGTCAATGGTGTAGAAACCCCAGTTCACGAAACAGAATTTGCCAAAGACTCTGTATTTGGCTACACAAGTAGTTAT TTGCCTGATTATGTGGAGGAAAAAACTCAAGCTCAGATCAAAGCAGAAATTGTAGAAAAATTTACACTTAATGACATTCG TTCTGGCAGTTTAGAACGTTTAATGAAACTGACTGGCAACCAATGTGGCGTTGTAGATGGAGAAACTCAAGCAGACTTAG ATAGATTTGCCAATGATTTATTGGCAGCAGCAAGTCAAGGTAAAAAGTTTTTGTTGCGCAGTGCTGCCAGTATTTTAACT TCCCTCACTGCTTTGAGTTCTCAACCTGTAGCTGCCGAGGAAATGAGACAATATGTCAGAGGTGGGAAACCAGGTGTAAT TATTGTTGGTTCTCACGTGAAGAAGTCTACTCAACAGTTGGAAAGGTTATTACAAGAATCTGAAGTAGTAGGTGTAGAAG TAGATGTATCTCATTTAGTTGAAGACTTTCAAGAGCAAAGAGCCACTTTACTAAAAAACATTCTCGAAAAAGTTTCTGCT GTTAATACAGAAGGGAAAACAACAGTTGTTTATACAAGTCGCAAAGAGTTGACTTTTGAAAATGTGCAGGTGCGTTTAGA GTTTGGTGTAGCAGTGTCGGAATTATTAATGGATATTGTTCGGGGTCTGCCAGAGGATATTGGATTTTTAATTAGTAAAG GTGGAATTACTTCTAATGATACCTTGAGTAAAGGTTTAGCTTTAACTACTGCCAGGTTATTAGGTCAGGTTTTAGAAGGT TGTTCAATAGTGCGGACTCCAGATTATCATCCTCAGTTTCCTGAATTACCTGTGGTATTATTTCCAGGGAATGTTGGAGA TGTAGATGGGTTAGTAACAGTTTATCAGCGTTTGAGTGGAAAGTAA
Upstream 100 bases:
>100_bases TTAATCCAATCAATAATTACGCAAACAGTTGACAGTTTTACTAACTCACCAGAAGATAAGAATATCCCAAAAATTTACTA TTTCCTATTTATCCAAAAAC
Downstream 100 bases:
>100_bases TTCCAGAAATGGCGAATATTACTCATCCATTGAGTATAGTCATTGACCTGCAACTCGTTACTTGGAAAAAATTAGTTAAA AGCTAAATATAGTAAACCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 441; Mature: 440
Protein sequence:
>441_residues MTTKKPKIIVIDDDPTGSQTVHSCLLLTKWDIETLKLGLLDESPIFFILSNTRALTPEQAATVTREITQNLTEAIAQSNI QDFLVVSRSDSTLRGHYPIETDTIAAELGQFDAHFLIPAFFECGRITRNSTHYLIVNGVETPVHETEFAKDSVFGYTSSY LPDYVEEKTQAQIKAEIVEKFTLNDIRSGSLERLMKLTGNQCGVVDGETQADLDRFANDLLAAASQGKKFLLRSAASILT SLTALSSQPVAAEEMRQYVRGGKPGVIIVGSHVKKSTQQLERLLQESEVVGVEVDVSHLVEDFQEQRATLLKNILEKVSA VNTEGKTTVVYTSRKELTFENVQVRLEFGVAVSELLMDIVRGLPEDIGFLISKGGITSNDTLSKGLALTTARLLGQVLEG CSIVRTPDYHPQFPELPVVLFPGNVGDVDGLVTVYQRLSGK
Sequences:
>Translated_441_residues MTTKKPKIIVIDDDPTGSQTVHSCLLLTKWDIETLKLGLLDESPIFFILSNTRALTPEQAATVTREITQNLTEAIAQSNI QDFLVVSRSDSTLRGHYPIETDTIAAELGQFDAHFLIPAFFECGRITRNSTHYLIVNGVETPVHETEFAKDSVFGYTSSY LPDYVEEKTQAQIKAEIVEKFTLNDIRSGSLERLMKLTGNQCGVVDGETQADLDRFANDLLAAASQGKKFLLRSAASILT SLTALSSQPVAAEEMRQYVRGGKPGVIIVGSHVKKSTQQLERLLQESEVVGVEVDVSHLVEDFQEQRATLLKNILEKVSA VNTEGKTTVVYTSRKELTFENVQVRLEFGVAVSELLMDIVRGLPEDIGFLISKGGITSNDTLSKGLALTTARLLGQVLEG CSIVRTPDYHPQFPELPVVLFPGNVGDVDGLVTVYQRLSGK >Mature_440_residues TTKKPKIIVIDDDPTGSQTVHSCLLLTKWDIETLKLGLLDESPIFFILSNTRALTPEQAATVTREITQNLTEAIAQSNIQ DFLVVSRSDSTLRGHYPIETDTIAAELGQFDAHFLIPAFFECGRITRNSTHYLIVNGVETPVHETEFAKDSVFGYTSSYL PDYVEEKTQAQIKAEIVEKFTLNDIRSGSLERLMKLTGNQCGVVDGETQADLDRFANDLLAAASQGKKFLLRSAASILTS LTALSSQPVAAEEMRQYVRGGKPGVIIVGSHVKKSTQQLERLLQESEVVGVEVDVSHLVEDFQEQRATLLKNILEKVSAV NTEGKTTVVYTSRKELTFENVQVRLEFGVAVSELLMDIVRGLPEDIGFLISKGGITSNDTLSKGLALTTARLLGQVLEGC SIVRTPDYHPQFPELPVVLFPGNVGDVDGLVTVYQRLSGK
Specific function: Unknown
COG id: COG3395
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48447; Mature: 48316
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTKKPKIIVIDDDPTGSQTVHSCLLLTKWDIETLKLGLLDESPIFFILSNTRALTPEQA CCCCCCEEEEECCCCCCHHHHHHHHHHEECCHHHHEEECCCCCCEEEEEECCCCCCCHHH ATVTREITQNLTEAIAQSNIQDFLVVSRSDSTLRGHYPIETDTIAAELGQFDAHFLIPAF HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCCCHHHHHHHHCCCCHHHHHHHH FECGRITRNSTHYLIVNGVETPVHETEFAKDSVFGYTSSYLPDYVEEKTQAQIKAEIVEK HHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHH FTLNDIRSGSLERLMKLTGNQCGVVDGETQADLDRFANDLLAAASQGKKFLLRSAASILT HHHHHHCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH SLTALSSQPVAAEEMRQYVRGGKPGVIIVGSHVKKSTQQLERLLQESEVVGVEVDVSHLV HHHHHCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCEEEEEECHHHHH EDFQEQRATLLKNILEKVSAVNTEGKTTVVYTSRKELTFENVQVRLEFGVAVSELLMDIV HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEECEEEEEEECHHHHHHHHHHH RGLPEDIGFLISKGGITSNDTLSKGLALTTARLLGQVLEGCSIVRTPDYHPQFPELPVVL HCCCHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEE FPGNVGDVDGLVTVYQRLSGK ECCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure TTKKPKIIVIDDDPTGSQTVHSCLLLTKWDIETLKLGLLDESPIFFILSNTRALTPEQA CCCCCEEEEECCCCCCHHHHHHHHHHEECCHHHHEEECCCCCCEEEEEECCCCCCCHHH ATVTREITQNLTEAIAQSNIQDFLVVSRSDSTLRGHYPIETDTIAAELGQFDAHFLIPAF HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCCCHHHHHHHHCCCCHHHHHHHH FECGRITRNSTHYLIVNGVETPVHETEFAKDSVFGYTSSYLPDYVEEKTQAQIKAEIVEK HHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHH FTLNDIRSGSLERLMKLTGNQCGVVDGETQADLDRFANDLLAAASQGKKFLLRSAASILT HHHHHHCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH SLTALSSQPVAAEEMRQYVRGGKPGVIIVGSHVKKSTQQLERLLQESEVVGVEVDVSHLV HHHHHCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCEEEEEECHHHHH EDFQEQRATLLKNILEKVSAVNTEGKTTVVYTSRKELTFENVQVRLEFGVAVSELLMDIV HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEECEEEEEEECHHHHHHHHHHH RGLPEDIGFLISKGGITSNDTLSKGLALTTARLLGQVLEGCSIVRTPDYHPQFPELPVVL HCCCHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEE FPGNVGDVDGLVTVYQRLSGK ECCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA