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The map label for this gene is recF

Identifier: 113475400

GI number: 113475400

Start: 2623272

End: 2624444

Strand: Direct

Name: recF

Synonym: Tery_1725

Alternate gene names: 113475400

Gene position: 2623272-2624444 (Clockwise)

Preceding gene: 113475399

Following gene: 113475401

Centisome position: 33.85

GC content: 38.96

Gene sequence:

>1173_bases
ATGTATCTGAAACATTTACATTTACGACAGTTTAGAAACTATCGAGACCAGCAAGTTAAATTTGATGGTGCTAAAACAAT
TTTGCTTGGAGATAATGCTCAAGGCAAATCTAATTTACTAGAGTCAGTTGAGTTACTTTCTACTCTTAAGTCTCACCGAG
CAATTCGCGATCGCGATTTAATTCTAGATAGTAAACAAGCAAGTAAAATTCAAGCATCTTTAGAAAGACAACTGGGAAAT
ATTGACTTGGCTCTAACTCTGCGGAGTCAAGGTAAACGCACTGTAGCAGTTAACGGAGAAACTATTAGTCGCCATTTAGA
TTTTTTAAGTATTTTGAATGTAGTTCATTTTTCTAGTCTAGATTTAGATTTAGTTAGAGGTGGGCCAGAAGTACGGCGCT
ATTGGTTAGATAGACTTTTGGTACAACTAGAACCTGTCTATGCTCACATTCTGCTACAGTATAATCAAGTTCTCCGTCAG
CGAAATGCTCTGTTAAAGAAAATTCGCCAACAAAAGATGGCTGCAGAAACTACTGGTTCATCACCTTCTATTCTGACTCA
GGAGTTGGCCTTGTGGGATGCTCAGTTGGCAACTACTGGGTCTCGAGTGATTCGACGACGACAGCGACTTTTGCAGAAGT
TGGCACCTCTAGCTGGTGAGTGGCATTGTGCTATTAGTGGGAGTATGGAAGTTTTCAAAATGGAATATTTAGCAAATGTA
ATTGTTGATAGTAACGAGTTAATTATTCAGGATAGTTTGGAAGGAGTACGTCAAGCTTTTTTGGAGAAAATTAAAGTCCG
GGCGATCGCTGAACAATATCAAGGTACTACGGTGGTAGGTCCTCATCGGGATGATGTAATTTTTACTATTAATGATACTC
CCGCACGACAATATGGTTCTCAGGGTCAGCAGCGCACTTTGGTGTTAGCTTTGAAGTTGGCTGAATTACAACTTATTGAA
GAAGTGGTGCAGGAACCACCTTTGTTGTTGTTGGATGATGTTTTGGCAGAGTTAGATCTCCATCGCCAAAATCAGTTGTT
AGAAGCAATTAGTAATCGTTTTCAAACTTTGATTACTACTACTCATTTGGGGTGTTTTGATGGTCAGTGGTTACAGGATA
CTCAAATTCTTTCGGTCAAGTCGGGAAATATTAGTTCTTTTTTAGATTTTTAG

Upstream 100 bases:

>100_bases
TTTCACAAAAGTTAAAAGTCATACATTCAAAGGTCATCTATTAAGATTTGATCGCCGAAAACACTGATAATTGAAATGAC
TCCTCTTAACCTTGCTGAAT

Downstream 100 bases:

>100_bases
GTTTTTTAGATTAAATCTGGTACTATTGATATGAATTAGATAATTAATTAGGAGTTAGTACTTATAAATCAAAAGTTAGG
AGCCAGAAAAGTCTGGGAAT

Product: recombination protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MYLKHLHLRQFRNYRDQQVKFDGAKTILLGDNAQGKSNLLESVELLSTLKSHRAIRDRDLILDSKQASKIQASLERQLGN
IDLALTLRSQGKRTVAVNGETISRHLDFLSILNVVHFSSLDLDLVRGGPEVRRYWLDRLLVQLEPVYAHILLQYNQVLRQ
RNALLKKIRQQKMAAETTGSSPSILTQELALWDAQLATTGSRVIRRRQRLLQKLAPLAGEWHCAISGSMEVFKMEYLANV
IVDSNELIIQDSLEGVRQAFLEKIKVRAIAEQYQGTTVVGPHRDDVIFTINDTPARQYGSQGQQRTLVLALKLAELQLIE
EVVQEPPLLLLDDVLAELDLHRQNQLLEAISNRFQTLITTTHLGCFDGQWLQDTQILSVKSGNISSFLDF

Sequences:

>Translated_390_residues
MYLKHLHLRQFRNYRDQQVKFDGAKTILLGDNAQGKSNLLESVELLSTLKSHRAIRDRDLILDSKQASKIQASLERQLGN
IDLALTLRSQGKRTVAVNGETISRHLDFLSILNVVHFSSLDLDLVRGGPEVRRYWLDRLLVQLEPVYAHILLQYNQVLRQ
RNALLKKIRQQKMAAETTGSSPSILTQELALWDAQLATTGSRVIRRRQRLLQKLAPLAGEWHCAISGSMEVFKMEYLANV
IVDSNELIIQDSLEGVRQAFLEKIKVRAIAEQYQGTTVVGPHRDDVIFTINDTPARQYGSQGQQRTLVLALKLAELQLIE
EVVQEPPLLLLDDVLAELDLHRQNQLLEAISNRFQTLITTTHLGCFDGQWLQDTQILSVKSGNISSFLDF
>Mature_390_residues
MYLKHLHLRQFRNYRDQQVKFDGAKTILLGDNAQGKSNLLESVELLSTLKSHRAIRDRDLILDSKQASKIQASLERQLGN
IDLALTLRSQGKRTVAVNGETISRHLDFLSILNVVHFSSLDLDLVRGGPEVRRYWLDRLLVQLEPVYAHILLQYNQVLRQ
RNALLKKIRQQKMAAETTGSSPSILTQELALWDAQLATTGSRVIRRRQRLLQKLAPLAGEWHCAISGSMEVFKMEYLANV
IVDSNELIIQDSLEGVRQAFLEKIKVRAIAEQYQGTTVVGPHRDDVIFTINDTPARQYGSQGQQRTLVLALKLAELQLIE
EVVQEPPLLLLDDVLAELDLHRQNQLLEAISNRFQTLITTTHLGCFDGQWLQDTQILSVKSGNISSFLDF

Specific function: The recF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP

COG id: COG1195

COG function: function code L; Recombinational DNA repair ATPase (RecF pathway)

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recF family

Homologues:

Organism=Escherichia coli, GI1790135, Length=390, Percent_Identity=22.0512820512821, Blast_Score=85, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECF_TRIEI (Q114T6)

Other databases:

- EMBL:   CP000393
- RefSeq:   YP_721461.1
- ProteinModelPortal:   Q114T6
- SMR:   Q114T6
- STRING:   Q114T6
- GeneID:   4243324
- GenomeReviews:   CP000393_GR
- KEGG:   ter:Tery_1725
- NMPDR:   fig|203124.1.peg.514
- eggNOG:   COG1195
- HOGENOM:   HBG645124
- OMA:   GQQRTLV
- PhylomeDB:   Q114T6
- ProtClustDB:   PRK00064
- BioCyc:   TERY203124:TERY_1725-MONOMER
- GO:   GO:0005694
- GO:   GO:0005737
- HAMAP:   MF_00365
- InterPro:   IPR001238
- InterPro:   IPR018078
- InterPro:   IPR003395
- TIGRFAMs:   TIGR00611

Pfam domain/function: PF02463 SMC_N

EC number: NA

Molecular weight: Translated: 44300; Mature: 44300

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: PS00617 RECF_1; PS00618 RECF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLKHLHLRQFRNYRDQQVKFDGAKTILLGDNAQGKSNLLESVELLSTLKSHRAIRDRDL
CCCHHHHHHHHHCCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ILDSKQASKIQASLERQLGNIDLALTLRSQGKRTVAVNGETISRHLDFLSILNVVHFSSL
EECCHHHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHCCC
DLDLVRGGPEVRRYWLDRLLVQLEPVYAHILLQYNQVLRQRNALLKKIRQQKMAAETTGS
CHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SPSILTQELALWDAQLATTGSRVIRRRQRLLQKLAPLAGEWHCAISGSMEVFKMEYLANV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHH
IVDSNELIIQDSLEGVRQAFLEKIKVRAIAEQYQGTTVVGPHRDDVIFTINDTPARQYGS
HCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEECCCCHHHHCC
QGQQRTLVLALKLAELQLIEEVVQEPPLLLLDDVLAELDLHRQNQLLEAISNRFQTLITT
CCCCEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
THLGCFDGQWLQDTQILSVKSGNISSFLDF
HHCCCCCCCCCCCCEEEEEECCCHHHHCCC
>Mature Secondary Structure
MYLKHLHLRQFRNYRDQQVKFDGAKTILLGDNAQGKSNLLESVELLSTLKSHRAIRDRDL
CCCHHHHHHHHHCCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ILDSKQASKIQASLERQLGNIDLALTLRSQGKRTVAVNGETISRHLDFLSILNVVHFSSL
EECCHHHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHCCC
DLDLVRGGPEVRRYWLDRLLVQLEPVYAHILLQYNQVLRQRNALLKKIRQQKMAAETTGS
CHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SPSILTQELALWDAQLATTGSRVIRRRQRLLQKLAPLAGEWHCAISGSMEVFKMEYLANV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHH
IVDSNELIIQDSLEGVRQAFLEKIKVRAIAEQYQGTTVVGPHRDDVIFTINDTPARQYGS
HCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEECCCCHHHHCC
QGQQRTLVLALKLAELQLIEEVVQEPPLLLLDDVLAELDLHRQNQLLEAISNRFQTLITT
CCCCEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
THLGCFDGQWLQDTQILSVKSGNISSFLDF
HHCCCCCCCCCCCCEEEEEECCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA