| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475395
Identifier: 113475395
GI number: 113475395
Start: 2613761
End: 2614414
Strand: Reverse
Name: 113475395
Synonym: Tery_1719
Alternate gene names: NA
Gene position: 2614414-2613761 (Counterclockwise)
Preceding gene: 113475396
Following gene: 113475394
Centisome position: 33.73
GC content: 38.53
Gene sequence:
>654_bases TTGGCTAATTTAATTGAGAATATAGGTTTTTTGACTAAACCTAGGGTAAATGTTGAGGAGTTAAAAGAACATTCACCTCA TTTGCGAGATTTGAATCAATGGTATCGACAAAATACTGGGCGGTTGGGAATTCTAACTAAGGTGTTTTATGAAACTAAGC CTATGGGTGGGGTTTTGGTTGTGAATGAGGATAGTGCTGATCCTGGAATTACGGATGTTCACTCTATTGCTGTTCCTGCG GATCACGTTTCTATTGCTAAAGCTGGCAAGAATGATTTGGTTTATGTTTCTACAATAAGGTTCTGTGAAAAAGTTTTTAC TGCTGAGAAGAATACTCAAGTTTCAAAAAGTATACCTGAAAATTTTCGTCGCAGACGAGGAGCTAAGAGGTTTGTTGGTA GGGATGAGGTCATAAGGACTTTGCACGAACAGTTGCGAGCAACTGAAATGGTGGCTATTTCTTCTGTTAGTGGTATGGCT GGTATTGGTAAGACTGAAGTTGCTCTCCAATATGCTTATTTTCATTGGGAACAAAGTACATACGCTGGTGGTATATGTTG GTTGGAATGTCGTGGGCAGAATGTGGGGGTTCAAATTATTAGTTTTGCTATGTCTGAATTTAATTTCAGTTTTTCTAAGG ATGATGACTTGTAG
Upstream 100 bases:
>100_bases ATAGGTAATTCGTACTGCTCAAAATTTTCCTCAGTATCAAGGTATTCTTCGACATATTAAGGGAATTGTCTTTTTATCTA CTCCACACAGGGGAATTCAT
Downstream 100 bases:
>100_bases AGTCGGATAGATTTTTGTTGGCGTCATTGGCAGGATGGTGATGTACTGCTGATTTTTGATGATGTTGTTAATTATGAAGA TATTTCAGATTTTTTACCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 217; Mature: 216
Protein sequence:
>217_residues MANLIENIGFLTKPRVNVEELKEHSPHLRDLNQWYRQNTGRLGILTKVFYETKPMGGVLVVNEDSADPGITDVHSIAVPA DHVSIAKAGKNDLVYVSTIRFCEKVFTAEKNTQVSKSIPENFRRRRGAKRFVGRDEVIRTLHEQLRATEMVAISSVSGMA GIGKTEVALQYAYFHWEQSTYAGGICWLECRGQNVGVQIISFAMSEFNFSFSKDDDL
Sequences:
>Translated_217_residues MANLIENIGFLTKPRVNVEELKEHSPHLRDLNQWYRQNTGRLGILTKVFYETKPMGGVLVVNEDSADPGITDVHSIAVPA DHVSIAKAGKNDLVYVSTIRFCEKVFTAEKNTQVSKSIPENFRRRRGAKRFVGRDEVIRTLHEQLRATEMVAISSVSGMA GIGKTEVALQYAYFHWEQSTYAGGICWLECRGQNVGVQIISFAMSEFNFSFSKDDDL >Mature_216_residues ANLIENIGFLTKPRVNVEELKEHSPHLRDLNQWYRQNTGRLGILTKVFYETKPMGGVLVVNEDSADPGITDVHSIAVPAD HVSIAKAGKNDLVYVSTIRFCEKVFTAEKNTQVSKSIPENFRRRRGAKRFVGRDEVIRTLHEQLRATEMVAISSVSGMAG IGKTEVALQYAYFHWEQSTYAGGICWLECRGQNVGVQIISFAMSEFNFSFSKDDDL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24417; Mature: 24286
Theoretical pI: Translated: 7.60; Mature: 7.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANLIENIGFLTKPRVNVEELKEHSPHLRDLNQWYRQNTGRLGILTKVFYETKPMGGVLV CCCHHHHCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCEEHHHHHHHHCCCCCCEEE VNEDSADPGITDVHSIAVPADHVSIAKAGKNDLVYVSTIRFCEKVFTAEKNTQVSKSIPE EECCCCCCCCCCHHHEECCCHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCCCHHHHHHHH NFRRRRGAKRFVGRDEVIRTLHEQLRATEMVAISSVSGMAGIGKTEVALQYAYFHWEQST HHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHEEEEHHEEECCCC YAGGICWLECRGQNVGVQIISFAMSEFNFSFSKDDDL CCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure ANLIENIGFLTKPRVNVEELKEHSPHLRDLNQWYRQNTGRLGILTKVFYETKPMGGVLV CCHHHHCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCEEHHHHHHHHCCCCCCEEE VNEDSADPGITDVHSIAVPADHVSIAKAGKNDLVYVSTIRFCEKVFTAEKNTQVSKSIPE EECCCCCCCCCCHHHEECCCHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCCCHHHHHHHH NFRRRRGAKRFVGRDEVIRTLHEQLRATEMVAISSVSGMAGIGKTEVALQYAYFHWEQST HHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHEEEEHHEEECCCC YAGGICWLECRGQNVGVQIISFAMSEFNFSFSKDDDL CCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA