| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475357
Identifier: 113475357
GI number: 113475357
Start: 2549833
End: 2551644
Strand: Reverse
Name: 113475357
Synonym: Tery_1674
Alternate gene names: NA
Gene position: 2551644-2549833 (Counterclockwise)
Preceding gene: 113475359
Following gene: 113475356
Centisome position: 32.92
GC content: 28.04
Gene sequence:
>1812_bases ATGCAAAAAAATAATTATAAATTAAGTTATAGATTAATTTTAGGCATCAGTTTATGTCTAGCAATAATTCCAGCTATAGT TTTAGGAATTCTTATCCTTAAATATAGTATTAATGTACCAATTCAAGACCAATGGCAAATCTCTGCTATTTTTGAAAAAT TCAATCAAGGAACCCTATCTTTTAATGATTTAATAGCACAACATAATGAAAGTAGAAAATTTTTTCCCCGGCTAATTTTT CTGACCTTAGCATTGATCACTAAATGGAATATTAGATATGAAATGTTAGTTACATTTTTACTAGCCTGTATAGTTTCTGT AAATATTTATCTGTTAAATAGACTAACAATATCTGGTTCGCATATTAAAAGTATAACCATAGCATTAATATCTAATATAT TCATCTTTTCTGCTGTTCAATATGAAAATTGGTTGTGGGGTATTCAAATAGTCGTTTTTACTCCTATAGTCTGCATTACT ACCTGTATATTAATTGCTTATTCTCCACTAAATAATATAGCCAAAATTTTAATTTGTATGGCCTTATCAACCATCAGCAC TTTTTCTTATGCTAATGGTTTATTAGCTTGGGTAATAGTTTTACCAATACTAGCTTTAGTCAAACTAAAATCTTGGTCAG AGATCAGGAAAAATATAATTTTATATCTGTTTTGGATAATTGGATTTATAGCTAATATAACCTTTTACTTTCATGATTAT CAAAAACCATTATCTCACCCTAGTCCATTAGAATCACTTCAATATCCAGATCAAACTTTCCAATATTTTCTAGCATTTTT AGGTAGTTCTCTAGGAATTGGTAGTAGTATACAACCTCTAAATAATTCAATTATTCTTGGCGCAGTAATTATTATTCTAT TTATTGGTTTATTTTCTTATGTAATATGGCATATTAAAGACTATGAATTACGAGATAAAACTATTAGCTGGATTATGCTT GGTTCATATACAGTTATTAGTGCTTTAGTTACATCATTTGGTCGAGTAACACTTGGTATAGATCAAGCTCTTTCATCAAG ATATACAACATTTTCAACATACATTATTATCTCTATAATTCATTTAATGATAATTGTGGGAGAAGATGCTATTAAAAAAT ATTCTTTTTTAATTAATAGAAGTTTATTCTCGAAAGTTATTTGCTGGTTTATTGGTATAATAACTGTTATACAAGTACAT AATTTCACCTATAGTGTAGAAAAGATGAAGTTATGGAAACAAGATTTTTTGAAATATAAAGGCTGTTTACTACTAATTGA TTTTACTCATGACAACTGTCAAAATCTAATTGATTCTTACTATTTTGAATATATAAAACAACGGGCGCATTACTTAACAG AATTAGGCTTTTTAGATCCTGGCTTAATCAAGACTAATCAAATTCCAGAGTTAATAGACACGAATAATAGTAGACAAGTA GAAGGTACTTTTGAAAAGCTAGAATTTATTGGGGCTAATAATTTATTAGCAACTGGTTGGGCAATATTTACTGATACAAA TTTACCTGTAGATGCAATAGTGCTTAGTTATGATAATTGGCAAGGTGAACCTATTGTTTCTGCTGTGGCAGATATGACAA TGTCAAGACCTAACCTTGTCAAAGAATTTAAGAGTCAAAAATATTTTAAATCAGGATGGCAAAAAGTATTATCTACTCAT AGGTTTCCCCAAGGAAATATTTATATAAAGGCTTGGGCATTAGATACAAATACAACTAAATTTTATCAAATTCCTGGTAT TTATATAGTCAACAAAAATGGTGAAAATATTAGTGTTTTATTAGGTAATTAA
Upstream 100 bases:
>100_bases AGAATTGTTTGTGTATCTAATTTATCATGAGCTTTTCAGGTTACAGAATTGCCAAAAAAATATTAACTGAAGCGTATTGA AATATAATCTCCACAAAAAT
Downstream 100 bases:
>100_bases ATAAGTAATAGTAACTATTCAGATTTTCCTTGGTCATGCTACGCAAACATCTTTTTGAACATATTTAACTAACTCCTAAG GTTAGCTGATGAGCTTTACT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 603; Mature: 603
Protein sequence:
>603_residues MQKNNYKLSYRLILGISLCLAIIPAIVLGILILKYSINVPIQDQWQISAIFEKFNQGTLSFNDLIAQHNESRKFFPRLIF LTLALITKWNIRYEMLVTFLLACIVSVNIYLLNRLTISGSHIKSITIALISNIFIFSAVQYENWLWGIQIVVFTPIVCIT TCILIAYSPLNNIAKILICMALSTISTFSYANGLLAWVIVLPILALVKLKSWSEIRKNIILYLFWIIGFIANITFYFHDY QKPLSHPSPLESLQYPDQTFQYFLAFLGSSLGIGSSIQPLNNSIILGAVIIILFIGLFSYVIWHIKDYELRDKTISWIML GSYTVISALVTSFGRVTLGIDQALSSRYTTFSTYIIISIIHLMIIVGEDAIKKYSFLINRSLFSKVICWFIGIITVIQVH NFTYSVEKMKLWKQDFLKYKGCLLLIDFTHDNCQNLIDSYYFEYIKQRAHYLTELGFLDPGLIKTNQIPELIDTNNSRQV EGTFEKLEFIGANNLLATGWAIFTDTNLPVDAIVLSYDNWQGEPIVSAVADMTMSRPNLVKEFKSQKYFKSGWQKVLSTH RFPQGNIYIKAWALDTNTTKFYQIPGIYIVNKNGENISVLLGN
Sequences:
>Translated_603_residues MQKNNYKLSYRLILGISLCLAIIPAIVLGILILKYSINVPIQDQWQISAIFEKFNQGTLSFNDLIAQHNESRKFFPRLIF LTLALITKWNIRYEMLVTFLLACIVSVNIYLLNRLTISGSHIKSITIALISNIFIFSAVQYENWLWGIQIVVFTPIVCIT TCILIAYSPLNNIAKILICMALSTISTFSYANGLLAWVIVLPILALVKLKSWSEIRKNIILYLFWIIGFIANITFYFHDY QKPLSHPSPLESLQYPDQTFQYFLAFLGSSLGIGSSIQPLNNSIILGAVIIILFIGLFSYVIWHIKDYELRDKTISWIML GSYTVISALVTSFGRVTLGIDQALSSRYTTFSTYIIISIIHLMIIVGEDAIKKYSFLINRSLFSKVICWFIGIITVIQVH NFTYSVEKMKLWKQDFLKYKGCLLLIDFTHDNCQNLIDSYYFEYIKQRAHYLTELGFLDPGLIKTNQIPELIDTNNSRQV EGTFEKLEFIGANNLLATGWAIFTDTNLPVDAIVLSYDNWQGEPIVSAVADMTMSRPNLVKEFKSQKYFKSGWQKVLSTH RFPQGNIYIKAWALDTNTTKFYQIPGIYIVNKNGENISVLLGN >Mature_603_residues MQKNNYKLSYRLILGISLCLAIIPAIVLGILILKYSINVPIQDQWQISAIFEKFNQGTLSFNDLIAQHNESRKFFPRLIF LTLALITKWNIRYEMLVTFLLACIVSVNIYLLNRLTISGSHIKSITIALISNIFIFSAVQYENWLWGIQIVVFTPIVCIT TCILIAYSPLNNIAKILICMALSTISTFSYANGLLAWVIVLPILALVKLKSWSEIRKNIILYLFWIIGFIANITFYFHDY QKPLSHPSPLESLQYPDQTFQYFLAFLGSSLGIGSSIQPLNNSIILGAVIIILFIGLFSYVIWHIKDYELRDKTISWIML GSYTVISALVTSFGRVTLGIDQALSSRYTTFSTYIIISIIHLMIIVGEDAIKKYSFLINRSLFSKVICWFIGIITVIQVH NFTYSVEKMKLWKQDFLKYKGCLLLIDFTHDNCQNLIDSYYFEYIKQRAHYLTELGFLDPGLIKTNQIPELIDTNNSRQV EGTFEKLEFIGANNLLATGWAIFTDTNLPVDAIVLSYDNWQGEPIVSAVADMTMSRPNLVKEFKSQKYFKSGWQKVLSTH RFPQGNIYIKAWALDTNTTKFYQIPGIYIVNKNGENISVLLGN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68998; Mature: 68998
Theoretical pI: Translated: 9.05; Mature: 9.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKNNYKLSYRLILGISLCLAIIPAIVLGILILKYSINVPIQDQWQISAIFEKFNQGTLS CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCC FNDLIAQHNESRKFFPRLIFLTLALITKWNIRYEMLVTFLLACIVSVNIYLLNRLTISGS HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCC HIKSITIALISNIFIFSAVQYENWLWGIQIVVFTPIVCITTCILIAYSPLNNIAKILICM HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH ALSTISTFSYANGLLAWVIVLPILALVKLKSWSEIRKNIILYLFWIIGFIANITFYFHDY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECH QKPLSHPSPLESLQYPDQTFQYFLAFLGSSLGIGSSIQPLNNSIILGAVIIILFIGLFSY HCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH VIWHIKDYELRDKTISWIMLGSYTVISALVTSFGRVTLGIDQALSSRYTTFSTYIIISII HHHHCCCCEECCCEEEEEEECHHHHHHHHHHHCCCEEEEHHHHHHCCHHHHHHHHHHHHH HLMIIVGEDAIKKYSFLINRSLFSKVICWFIGIITVIQVHNFTYSVEKMKLWKQDFLKYK HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHC GCLLLIDFTHDNCQNLIDSYYFEYIKQRAHYLTELGFLDPGLIKTNQIPELIDTNNSRQV CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCEE EGTFEKLEFIGANNLLATGWAIFTDTNLPVDAIVLSYDNWQGEPIVSAVADMTMSRPNLV HHHHHHHHHHCCCCEEECCEEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCHHHH KEFKSQKYFKSGWQKVLSTHRFPQGNIYIKAWALDTNTTKFYQIPGIYIVNKNGENISVL HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCEEEECCEEEEEECCCCEEEEE LGN ECC >Mature Secondary Structure MQKNNYKLSYRLILGISLCLAIIPAIVLGILILKYSINVPIQDQWQISAIFEKFNQGTLS CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCC FNDLIAQHNESRKFFPRLIFLTLALITKWNIRYEMLVTFLLACIVSVNIYLLNRLTISGS HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCC HIKSITIALISNIFIFSAVQYENWLWGIQIVVFTPIVCITTCILIAYSPLNNIAKILICM HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH ALSTISTFSYANGLLAWVIVLPILALVKLKSWSEIRKNIILYLFWIIGFIANITFYFHDY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECH QKPLSHPSPLESLQYPDQTFQYFLAFLGSSLGIGSSIQPLNNSIILGAVIIILFIGLFSY HCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH VIWHIKDYELRDKTISWIMLGSYTVISALVTSFGRVTLGIDQALSSRYTTFSTYIIISII HHHHCCCCEECCCEEEEEEECHHHHHHHHHHHCCCEEEEHHHHHHCCHHHHHHHHHHHHH HLMIIVGEDAIKKYSFLINRSLFSKVICWFIGIITVIQVHNFTYSVEKMKLWKQDFLKYK HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHC GCLLLIDFTHDNCQNLIDSYYFEYIKQRAHYLTELGFLDPGLIKTNQIPELIDTNNSRQV CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCEE EGTFEKLEFIGANNLLATGWAIFTDTNLPVDAIVLSYDNWQGEPIVSAVADMTMSRPNLV HHHHHHHHHHCCCCEEECCEEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCHHHH KEFKSQKYFKSGWQKVLSTHRFPQGNIYIKAWALDTNTTKFYQIPGIYIVNKNGENISVL HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCEEEECCEEEEEECCCCEEEEE LGN ECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA