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The map label for this gene is rca [H]

Identifier: 113475266

GI number: 113475266

Start: 2407801

End: 2409072

Strand: Reverse

Name: rca [H]

Synonym: Tery_1574

Alternate gene names: 113475266

Gene position: 2409072-2407801 (Counterclockwise)

Preceding gene: 113475267

Following gene: 113475263

Centisome position: 31.08

GC content: 33.18

Gene sequence:

>1272_bases
ATGCCATATTATATATCACCTAGATTCATAGATAAACTAGCAGTACATATTACCAAAAACTTCTTAGAAATCCCCAGAAT
AAGGGTACCTTTAATAATAGGAATACACGGACGAAAAGGAGAAGGAAAAACATTTCAATGCCAATTAGTTTTTGAGAAAA
TGGGAATAGAACCTGTCACAATATCTGGTGGAGAATTAGAAAGTAAAGATGCGGGAGATCCTGCACGTTTATTACGTCTA
CGTTATAGAGAAGCGTCAGAAAAAGTTAAAGTTCAAGGTCGAATGTGTGCTTTATTTATTAATGACTTAGATGCAGGTGC
TGGTAGATTTGATGGGGGTACTCAATATACGGTAAATACTCAATTAGTAAATGCTACTTTAATGAATATTGCTGATAACC
CTACAAATGTACAATTACCAGGCAGCTACGATGAAACTCCCTTACATCGAATACCAATTATTGTGACTGGAAATGATTTT
TCTACTCTTTATGCGCCTTTAATTAGAGATGGTCGAATGGAGAAATTTTATTGGGAACCAAATAGAGAAGATAGAGTTGG
CATAGTAGGTAGCATATTTAAAACAGATGAACTTTCTACAGGAGATATTGATAATTTAATAGATGAATTTTCTGACCAGG
CTATCGATTTTTTTAGTGCCTTACGAAGTCGGATATATGATGAACAAATTCGTGATTTTATTCACCAAGTAGGAATAGAA
AAAATTTCTAGGCGGGTAGTAAATTCTGTAGAAAAGATTCCCGATTTTCCTCAACCTACTTTTAATGTTTCCCGTCTTCT
AGAGTATGGAAAAATTATGGTTGGAGAACAAGAACGTATTCGAGAATTGGGTTTAGTAGAAGAATATAATAAATCTCGAT
TGTTTGGTGTTTTTAAAACAAGTCAACGAGAAAATATTACGCCAAATTCTAATGGATTATTTCCCGAAGTAACTACGGAA
AATAAGTTAAATGCAAATCGGATTAATCATAGTATTAAAAGTAGTAATCTTAGTTCAGAAGTGAGGGAAAAAATACAAAA
AATTCTCGAAGATGGTGGAAAAATTGGGATGGAATATGCAGATAAACGTAGATATAAAACTGGTTCATGGAAAAGTTGTG
GAAAAATAGAGAATGGGGAAGTAAAAGAGGTGATAAATGCTGTAGAAAATTGTTTAGTTAAACATCAAAATGATTATGTT
CGTTTGATTGGTATTGATGGGAATGTGAAGCGACGGATAGTTGAGAAAATTATTTATAGGCCCGATATATAA

Upstream 100 bases:

>100_bases
TTTTTCTGAGTAATTATCTAGATATTCTTTCCTTGTGCTTAATTGTTATCTGTTTTAAATCTGTATCAAACCATTATTTA
TACTAAAAAAATTAAAATAA

Downstream 100 bases:

>100_bases
TAAATTGATTGATTATTGATCTAAGACTAAAGAATATGTTCAAAATAGGAAATCTAGAAAATTATTTATAGACCCGATAT
ATAATAAAGTGATTGATTAT

Product: ribulose 1,5-bisphosphate carboxylase small subunit

Products: NA

Alternate protein names: RA; RuBisCO activase [H]

Number of amino acids: Translated: 423; Mature: 422

Protein sequence:

>423_residues
MPYYISPRFIDKLAVHITKNFLEIPRIRVPLIIGIHGRKGEGKTFQCQLVFEKMGIEPVTISGGELESKDAGDPARLLRL
RYREASEKVKVQGRMCALFINDLDAGAGRFDGGTQYTVNTQLVNATLMNIADNPTNVQLPGSYDETPLHRIPIIVTGNDF
STLYAPLIRDGRMEKFYWEPNREDRVGIVGSIFKTDELSTGDIDNLIDEFSDQAIDFFSALRSRIYDEQIRDFIHQVGIE
KISRRVVNSVEKIPDFPQPTFNVSRLLEYGKIMVGEQERIRELGLVEEYNKSRLFGVFKTSQRENITPNSNGLFPEVTTE
NKLNANRINHSIKSSNLSSEVREKIQKILEDGGKIGMEYADKRRYKTGSWKSCGKIENGEVKEVINAVENCLVKHQNDYV
RLIGIDGNVKRRIVEKIIYRPDI

Sequences:

>Translated_423_residues
MPYYISPRFIDKLAVHITKNFLEIPRIRVPLIIGIHGRKGEGKTFQCQLVFEKMGIEPVTISGGELESKDAGDPARLLRL
RYREASEKVKVQGRMCALFINDLDAGAGRFDGGTQYTVNTQLVNATLMNIADNPTNVQLPGSYDETPLHRIPIIVTGNDF
STLYAPLIRDGRMEKFYWEPNREDRVGIVGSIFKTDELSTGDIDNLIDEFSDQAIDFFSALRSRIYDEQIRDFIHQVGIE
KISRRVVNSVEKIPDFPQPTFNVSRLLEYGKIMVGEQERIRELGLVEEYNKSRLFGVFKTSQRENITPNSNGLFPEVTTE
NKLNANRINHSIKSSNLSSEVREKIQKILEDGGKIGMEYADKRRYKTGSWKSCGKIENGEVKEVINAVENCLVKHQNDYV
RLIGIDGNVKRRIVEKIIYRPDI
>Mature_422_residues
PYYISPRFIDKLAVHITKNFLEIPRIRVPLIIGIHGRKGEGKTFQCQLVFEKMGIEPVTISGGELESKDAGDPARLLRLR
YREASEKVKVQGRMCALFINDLDAGAGRFDGGTQYTVNTQLVNATLMNIADNPTNVQLPGSYDETPLHRIPIIVTGNDFS
TLYAPLIRDGRMEKFYWEPNREDRVGIVGSIFKTDELSTGDIDNLIDEFSDQAIDFFSALRSRIYDEQIRDFIHQVGIEK
ISRRVVNSVEKIPDFPQPTFNVSRLLEYGKIMVGEQERIRELGLVEEYNKSRLFGVFKTSQRENITPNSNGLFPEVTTEN
KLNANRINHSIKSSNLSSEVREKIQKILEDGGKIGMEYADKRRYKTGSWKSCGKIENGEVKEVINAVENCLVKHQNDYVR
LIGIDGNVKRRIVEKIIYRPDI

Specific function: Activation of RuBisCO (ribulose-1,5-bisohosphate carboxylase/oxygenase; EC 4.1.1.39) involves the ATP-dependent carboxylation of the epsilon-amino group of lysine leading to a carbamate structure [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO activase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003959
- InterPro:   IPR000894 [H]

Pfam domain/function: PF00004 AAA; PF00101 RuBisCO_small [H]

EC number: NA

Molecular weight: Translated: 48222; Mature: 48091

Theoretical pI: Translated: 7.96; Mature: 7.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYYISPRFIDKLAVHITKNFLEIPRIRVPLIIGIHGRKGEGKTFQCQLVFEKMGIEPVT
CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEEHHHHCCCEEE
ISGGELESKDAGDPARLLRLRYREASEKVKVQGRMCALFINDLDAGAGRFDGGTQYTVNT
ECCCCCCCCCCCCHHHHHHHHHHHHHHHEEECCEEEEEEEECCCCCCCCCCCCCEEEEEH
QLVNATLMNIADNPTNVQLPGSYDETPLHRIPIIVTGNDFSTLYAPLIRDGRMEKFYWEP
HHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEEECCCHHHHHHHHHCCCCCCEEEECC
NREDRVGIVGSIFKTDELSTGDIDNLIDEFSDQAIDFFSALRSRIYDEQIRDFIHQVGIE
CCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KISRRVVNSVEKIPDFPQPTFNVSRLLEYGKIMVGEQERIRELGLVEEYNKSRLFGVFKT
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCEEECCHHHHHHCCCHHHCCCCCEEEEEEC
SQRENITPNSNGLFPEVTTENKLNANRINHSIKSSNLSSEVREKIQKILEDGGKIGMEYA
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHH
DKRRYKTGSWKSCGKIENGEVKEVINAVENCLVKHQNDYVRLIGIDGNVKRRIVEKIIYR
HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCC
PDI
CCC
>Mature Secondary Structure 
PYYISPRFIDKLAVHITKNFLEIPRIRVPLIIGIHGRKGEGKTFQCQLVFEKMGIEPVT
CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEEHHHHCCCEEE
ISGGELESKDAGDPARLLRLRYREASEKVKVQGRMCALFINDLDAGAGRFDGGTQYTVNT
ECCCCCCCCCCCCHHHHHHHHHHHHHHHEEECCEEEEEEEECCCCCCCCCCCCCEEEEEH
QLVNATLMNIADNPTNVQLPGSYDETPLHRIPIIVTGNDFSTLYAPLIRDGRMEKFYWEP
HHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEEECCCHHHHHHHHHCCCCCCEEEECC
NREDRVGIVGSIFKTDELSTGDIDNLIDEFSDQAIDFFSALRSRIYDEQIRDFIHQVGIE
CCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KISRRVVNSVEKIPDFPQPTFNVSRLLEYGKIMVGEQERIRELGLVEEYNKSRLFGVFKT
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCEEECCHHHHHHCCCHHHCCCCCEEEEEEC
SQRENITPNSNGLFPEVTTENKLNANRINHSIKSSNLSSEVREKIQKILEDGGKIGMEYA
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHH
DKRRYKTGSWKSCGKIENGEVKEVINAVENCLVKHQNDYVRLIGIDGNVKRRIVEKIIYR
HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCC
PDI
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8467074 [H]