Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113475248

Identifier: 113475248

GI number: 113475248

Start: 2375504

End: 2376163

Strand: Reverse

Name: 113475248

Synonym: Tery_1556

Alternate gene names: NA

Gene position: 2376163-2375504 (Counterclockwise)

Preceding gene: 113475249

Following gene: 113475247

Centisome position: 30.66

GC content: 36.06

Gene sequence:

>660_bases
GTGAAAACAACTTCAGATCAAAAACAACCATCAAGCAGCAGAGAAGATCAACCTTTAATTCTAGTAGAAACAGCTTTTCT
GGCCAGTACCGCCAGCTTGATTTGGTTTATCAACTATTATTTTCCAGTAGGGCCTTTATTAAAGATTTTTTTCCCCATAC
CCACTGCTTTACTTTACTTGCGCTGGGGGAGCCGTGCATCTTGGATGGGCGCAATAGTATCGGGATTACTGTTATCTATA
CTAATGGGGCCAACTCGCAGCATCTTATTTGTAATTCCTTTTGCTTTGATGGGAGTAATGTTGGGAGCATTATGGAGGCG
AGGCAAAAGTTGGTTCGTTTCTATTACTTATGGTTCTCTACTTGGCTCTATAGGTTTCTTTTTTAGATTTTGGTTACTTT
CAATTTTGTTAGGGCAAGACCTTTGGATCTACTTAATTACACAAGCTACAGAATTAGTAGAATGGGTATTTGTCAAATTA
GGATTATTAAATCAACCCAATTTACTATTAGTTCAACTGATAGCTTTAATCCTGATTTTTATAAACAATGTTATCTACTT
ATCCGTTGTACATTTAGTAGCTTTATTATTACTAGATAGGATCGGAAACTCTATTCCTAGACCTCCTAAATGGATAAAAA
AATTGCTGGATTATGATTAG

Upstream 100 bases:

>100_bases
TTAATTAAACGCGAGCGCGATATTTTATGTATTCCTGACCTCCACGCTTTAGAACGTACACTTGTTTAAAAGTTAAAAGC
CAAAACCCAAAACCAAATCA

Downstream 100 bases:

>100_bases
TTAAAAAATAGGAAATAGAAAACACGGAATATAAAGTGAGTTTGAAACTTTACCTGACTATCCTCAAAAGTGCTGTCAAT
AATTTCCTAGCTTAAACCCT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MKTTSDQKQPSSSREDQPLILVETAFLASTASLIWFINYYFPVGPLLKIFFPIPTALLYLRWGSRASWMGAIVSGLLLSI
LMGPTRSILFVIPFALMGVMLGALWRRGKSWFVSITYGSLLGSIGFFFRFWLLSILLGQDLWIYLITQATELVEWVFVKL
GLLNQPNLLLVQLIALILIFINNVIYLSVVHLVALLLLDRIGNSIPRPPKWIKKLLDYD

Sequences:

>Translated_219_residues
MKTTSDQKQPSSSREDQPLILVETAFLASTASLIWFINYYFPVGPLLKIFFPIPTALLYLRWGSRASWMGAIVSGLLLSI
LMGPTRSILFVIPFALMGVMLGALWRRGKSWFVSITYGSLLGSIGFFFRFWLLSILLGQDLWIYLITQATELVEWVFVKL
GLLNQPNLLLVQLIALILIFINNVIYLSVVHLVALLLLDRIGNSIPRPPKWIKKLLDYD
>Mature_219_residues
MKTTSDQKQPSSSREDQPLILVETAFLASTASLIWFINYYFPVGPLLKIFFPIPTALLYLRWGSRASWMGAIVSGLLLSI
LMGPTRSILFVIPFALMGVMLGALWRRGKSWFVSITYGSLLGSIGFFFRFWLLSILLGQDLWIYLITQATELVEWVFVKL
GLLNQPNLLLVQLIALILIFINNVIYLSVVHLVALLLLDRIGNSIPRPPKWIKKLLDYD

Specific function: Unknown

COG id: COG4241

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24876; Mature: 24876

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTTSDQKQPSSSREDQPLILVETAFLASTASLIWFINYYFPVGPLLKIFFPIPTALLYL
CCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
RWGSRASWMGAIVSGLLLSILMGPTRSILFVIPFALMGVMLGALWRRGKSWFVSITYGSL
HCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHH
LGSIGFFFRFWLLSILLGQDLWIYLITQATELVEWVFVKLGLLNQPNLLLVQLIALILIF
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
INNVIYLSVVHLVALLLLDRIGNSIPRPPKWIKKLLDYD
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MKTTSDQKQPSSSREDQPLILVETAFLASTASLIWFINYYFPVGPLLKIFFPIPTALLYL
CCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
RWGSRASWMGAIVSGLLLSILMGPTRSILFVIPFALMGVMLGALWRRGKSWFVSITYGSL
HCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHH
LGSIGFFFRFWLLSILLGQDLWIYLITQATELVEWVFVKLGLLNQPNLLLVQLIALILIF
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
INNVIYLSVVHLVALLLLDRIGNSIPRPPKWIKKLLDYD
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA