Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113475247

Identifier: 113475247

GI number: 113475247

Start: 2374239

End: 2375345

Strand: Reverse

Name: 113475247

Synonym: Tery_1555

Alternate gene names: NA

Gene position: 2375345-2374239 (Counterclockwise)

Preceding gene: 113475248

Following gene: 113475245

Centisome position: 30.65

GC content: 40.65

Gene sequence:

>1107_bases
ATGATTCGTGTTTATACCCAGAGACAACAGGGAAAAAATTGGCTCCAAAGGTATCAAGGCTACAAACCAATTTTTGGTTG
TATTTTAGGATTTACAGATACAGGTCTAATTCCAGGAATTTCGGCAGCAGGAGCAACGCCACAAGACCGCCAATATACTT
GTTTAGCAGATATAGAATTTTTATATAACGGTCTACAACTACAACCCCAATATCCATTACCTCCCCTTGAGGCTGGTGCT
TCCCCAGTCTTAATCACAAAAGCAATTATTGATACTCTCAATATTCCTCTTTATTTATTTAATGCTGGCTTATACCATAA
ACCAACTGTTCCAACAATTGATTTGGGAGGCGCTCCTGCTCGTTGTTTAACTTCTGGTCATGCTTTAGATCTGGCAACAA
TTCAACATTTACTAGAAGTAGGTAGTTATTGGGGTCGGAAGTTAGCTGATGAAGCAAAAGATAGCTATGTGATTTTAGGA
GAATGTGTAGTTGGAGGAACAACTACCGCTTTAGCAGTTTTATTAGGTTTGGGTATTGGCGCTATTGGTAAAGTAAATAG
CAGTCATCCTCAATGTAATCATGATCAAAAATTGGCTGTAGTACATCAGGGTTTACAGGAGGCTGGCTTTCATTCGGCGC
TTCCAGTGTCAGAACCTCTAAAACTAGTCGCTGCAGTTGGAGACCCGATGCAAATAGTAGTAGCAGGAATGGGAATGGCA
GCAAGTCTCAAGGTGGGGGTAATGTTAGCTGGTGGAACGCAAATGCTGGCTGTTTATGCTTTAATGCAAGTATTGGCAGA
AAAGTTATCTTTACTTTGGAGACCTGAGAATATTGTGGTGGGAACAACTCGTTGGGTTGCTGAAGATCCCACGGGAGACA
CCGTTGGGTTAGCACAAGAGATTGGTTGTGTACCTTTAATGGCAACACAACTTCATTTTGATGAGTCTTGTTATCCTCAA
CTACAAGCTTATGAAAGGGGATATGTTAAGGAAGGAGTTGGCTGTGGAGGCTGCGCGATCACTGCTCATTTATATAGAAA
TTGGAATCAAACTCAATTACTGAAAGCTGTTGAAGATTTGTTTGCGTCTTTTATATTTCTTGAATAA

Upstream 100 bases:

>100_bases
TATCCTCAAAAGTGCTGTCAATAATTTCCTAGCTTAAACCCTTCCTTTTTCCTGACTTATTACTTTCTTTATCAATTGAA
CTATCACCCATTATCCAATC

Downstream 100 bases:

>100_bases
AAAATTAGCAACATAGTTTTACACGTAAGTCAAAAGTTAACCTCCCTTACCCTAGGGCTGTTTCTTTCTCTCAAAAAAAA
GGTGGGGTTCCAGGGGAGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MIRVYTQRQQGKNWLQRYQGYKPIFGCILGFTDTGLIPGISAAGATPQDRQYTCLADIEFLYNGLQLQPQYPLPPLEAGA
SPVLITKAIIDTLNIPLYLFNAGLYHKPTVPTIDLGGAPARCLTSGHALDLATIQHLLEVGSYWGRKLADEAKDSYVILG
ECVVGGTTTALAVLLGLGIGAIGKVNSSHPQCNHDQKLAVVHQGLQEAGFHSALPVSEPLKLVAAVGDPMQIVVAGMGMA
ASLKVGVMLAGGTQMLAVYALMQVLAEKLSLLWRPENIVVGTTRWVAEDPTGDTVGLAQEIGCVPLMATQLHFDESCYPQ
LQAYERGYVKEGVGCGGCAITAHLYRNWNQTQLLKAVEDLFASFIFLE

Sequences:

>Translated_368_residues
MIRVYTQRQQGKNWLQRYQGYKPIFGCILGFTDTGLIPGISAAGATPQDRQYTCLADIEFLYNGLQLQPQYPLPPLEAGA
SPVLITKAIIDTLNIPLYLFNAGLYHKPTVPTIDLGGAPARCLTSGHALDLATIQHLLEVGSYWGRKLADEAKDSYVILG
ECVVGGTTTALAVLLGLGIGAIGKVNSSHPQCNHDQKLAVVHQGLQEAGFHSALPVSEPLKLVAAVGDPMQIVVAGMGMA
ASLKVGVMLAGGTQMLAVYALMQVLAEKLSLLWRPENIVVGTTRWVAEDPTGDTVGLAQEIGCVPLMATQLHFDESCYPQ
LQAYERGYVKEGVGCGGCAITAHLYRNWNQTQLLKAVEDLFASFIFLE
>Mature_368_residues
MIRVYTQRQQGKNWLQRYQGYKPIFGCILGFTDTGLIPGISAAGATPQDRQYTCLADIEFLYNGLQLQPQYPLPPLEAGA
SPVLITKAIIDTLNIPLYLFNAGLYHKPTVPTIDLGGAPARCLTSGHALDLATIQHLLEVGSYWGRKLADEAKDSYVILG
ECVVGGTTTALAVLLGLGIGAIGKVNSSHPQCNHDQKLAVVHQGLQEAGFHSALPVSEPLKLVAAVGDPMQIVVAGMGMA
ASLKVGVMLAGGTQMLAVYALMQVLAEKLSLLWRPENIVVGTTRWVAEDPTGDTVGLAQEIGCVPLMATQLHFDESCYPQ
LQAYERGYVKEGVGCGGCAITAHLYRNWNQTQLLKAVEDLFASFIFLE

Specific function: Unknown

COG id: COG2038

COG function: function code H; NaMN:DMB phosphoribosyltransferase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0284 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1555_TRIEI (Q115I9)

Other databases:

- EMBL:   CP000393
- RefSeq:   YP_721308.1
- STRING:   Q115I9
- GeneID:   4242034
- GenomeReviews:   CP000393_GR
- KEGG:   ter:Tery_1555
- NMPDR:   fig|203124.1.peg.5652
- eggNOG:   COG2038
- HOGENOM:   HBG497525
- OMA:   QMLAVYA
- ProtClustDB:   PRK04447
- BioCyc:   TERY203124:TERY_1555-MONOMER
- HAMAP:   MF_01086
- InterPro:   IPR003200
- InterPro:   IPR002805
- TIGRFAMs:   TIGR00303

Pfam domain/function: PF02277 DBI_PRT; SSF52733 NN:DBI_PRT

EC number: NA

Molecular weight: Translated: 39565; Mature: 39565

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRVYTQRQQGKNWLQRYQGYKPIFGCILGFTDTGLIPGISAAGATPQDRQYTCLADIEF
CEEEECCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEHEEHHH
LYNGLQLQPQYPLPPLEAGASPVLITKAIIDTLNIPLYLFNAGLYHKPTVPTIDLGGAPA
HHCCCEECCCCCCCCHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEECCCCCH
RCLTSGHALDLATIQHLLEVGSYWGRKLADEAKDSYVILGECVVGGTTTALAVLLGLGIG
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHCCC
AIGKVNSSHPQCNHDQKLAVVHQGLQEAGFHSALPVSEPLKLVAAVGDPMQIVVAGMGMA
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCC
ASLKVGVMLAGGTQMLAVYALMQVLAEKLSLLWRPENIVVGTTRWVAEDPTGDTVGLAQE
EEEEEEEEEECCHHHHHHHHHHHHHHHHHHHEECCCCEEEECEEEEECCCCCCCHHHHHH
IGCVPLMATQLHFDESCYPQLQAYERGYVKEGVGCGGCAITAHLYRNWNQTQLLKAVEDL
CCCHHHHHHHHCCCCCCCHHHHHHHCCHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
FASFIFLE
HHHHHCCC
>Mature Secondary Structure
MIRVYTQRQQGKNWLQRYQGYKPIFGCILGFTDTGLIPGISAAGATPQDRQYTCLADIEF
CEEEECCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEHEEHHH
LYNGLQLQPQYPLPPLEAGASPVLITKAIIDTLNIPLYLFNAGLYHKPTVPTIDLGGAPA
HHCCCEECCCCCCCCHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEECCCCCH
RCLTSGHALDLATIQHLLEVGSYWGRKLADEAKDSYVILGECVVGGTTTALAVLLGLGIG
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHCCC
AIGKVNSSHPQCNHDQKLAVVHQGLQEAGFHSALPVSEPLKLVAAVGDPMQIVVAGMGMA
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCC
ASLKVGVMLAGGTQMLAVYALMQVLAEKLSLLWRPENIVVGTTRWVAEDPTGDTVGLAQE
EEEEEEEEEECCHHHHHHHHHHHHHHHHHHHEECCCCEEEECEEEEECCCCCCCHHHHHH
IGCVPLMATQLHFDESCYPQLQAYERGYVKEGVGCGGCAITAHLYRNWNQTQLLKAVEDL
CCCHHHHHHHHCCCCCCCHHHHHHHCCHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
FASFIFLE
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA