| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475247
Identifier: 113475247
GI number: 113475247
Start: 2374239
End: 2375345
Strand: Reverse
Name: 113475247
Synonym: Tery_1555
Alternate gene names: NA
Gene position: 2375345-2374239 (Counterclockwise)
Preceding gene: 113475248
Following gene: 113475245
Centisome position: 30.65
GC content: 40.65
Gene sequence:
>1107_bases ATGATTCGTGTTTATACCCAGAGACAACAGGGAAAAAATTGGCTCCAAAGGTATCAAGGCTACAAACCAATTTTTGGTTG TATTTTAGGATTTACAGATACAGGTCTAATTCCAGGAATTTCGGCAGCAGGAGCAACGCCACAAGACCGCCAATATACTT GTTTAGCAGATATAGAATTTTTATATAACGGTCTACAACTACAACCCCAATATCCATTACCTCCCCTTGAGGCTGGTGCT TCCCCAGTCTTAATCACAAAAGCAATTATTGATACTCTCAATATTCCTCTTTATTTATTTAATGCTGGCTTATACCATAA ACCAACTGTTCCAACAATTGATTTGGGAGGCGCTCCTGCTCGTTGTTTAACTTCTGGTCATGCTTTAGATCTGGCAACAA TTCAACATTTACTAGAAGTAGGTAGTTATTGGGGTCGGAAGTTAGCTGATGAAGCAAAAGATAGCTATGTGATTTTAGGA GAATGTGTAGTTGGAGGAACAACTACCGCTTTAGCAGTTTTATTAGGTTTGGGTATTGGCGCTATTGGTAAAGTAAATAG CAGTCATCCTCAATGTAATCATGATCAAAAATTGGCTGTAGTACATCAGGGTTTACAGGAGGCTGGCTTTCATTCGGCGC TTCCAGTGTCAGAACCTCTAAAACTAGTCGCTGCAGTTGGAGACCCGATGCAAATAGTAGTAGCAGGAATGGGAATGGCA GCAAGTCTCAAGGTGGGGGTAATGTTAGCTGGTGGAACGCAAATGCTGGCTGTTTATGCTTTAATGCAAGTATTGGCAGA AAAGTTATCTTTACTTTGGAGACCTGAGAATATTGTGGTGGGAACAACTCGTTGGGTTGCTGAAGATCCCACGGGAGACA CCGTTGGGTTAGCACAAGAGATTGGTTGTGTACCTTTAATGGCAACACAACTTCATTTTGATGAGTCTTGTTATCCTCAA CTACAAGCTTATGAAAGGGGATATGTTAAGGAAGGAGTTGGCTGTGGAGGCTGCGCGATCACTGCTCATTTATATAGAAA TTGGAATCAAACTCAATTACTGAAAGCTGTTGAAGATTTGTTTGCGTCTTTTATATTTCTTGAATAA
Upstream 100 bases:
>100_bases TATCCTCAAAAGTGCTGTCAATAATTTCCTAGCTTAAACCCTTCCTTTTTCCTGACTTATTACTTTCTTTATCAATTGAA CTATCACCCATTATCCAATC
Downstream 100 bases:
>100_bases AAAATTAGCAACATAGTTTTACACGTAAGTCAAAAGTTAACCTCCCTTACCCTAGGGCTGTTTCTTTCTCTCAAAAAAAA GGTGGGGTTCCAGGGGAGCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 368; Mature: 368
Protein sequence:
>368_residues MIRVYTQRQQGKNWLQRYQGYKPIFGCILGFTDTGLIPGISAAGATPQDRQYTCLADIEFLYNGLQLQPQYPLPPLEAGA SPVLITKAIIDTLNIPLYLFNAGLYHKPTVPTIDLGGAPARCLTSGHALDLATIQHLLEVGSYWGRKLADEAKDSYVILG ECVVGGTTTALAVLLGLGIGAIGKVNSSHPQCNHDQKLAVVHQGLQEAGFHSALPVSEPLKLVAAVGDPMQIVVAGMGMA ASLKVGVMLAGGTQMLAVYALMQVLAEKLSLLWRPENIVVGTTRWVAEDPTGDTVGLAQEIGCVPLMATQLHFDESCYPQ LQAYERGYVKEGVGCGGCAITAHLYRNWNQTQLLKAVEDLFASFIFLE
Sequences:
>Translated_368_residues MIRVYTQRQQGKNWLQRYQGYKPIFGCILGFTDTGLIPGISAAGATPQDRQYTCLADIEFLYNGLQLQPQYPLPPLEAGA SPVLITKAIIDTLNIPLYLFNAGLYHKPTVPTIDLGGAPARCLTSGHALDLATIQHLLEVGSYWGRKLADEAKDSYVILG ECVVGGTTTALAVLLGLGIGAIGKVNSSHPQCNHDQKLAVVHQGLQEAGFHSALPVSEPLKLVAAVGDPMQIVVAGMGMA ASLKVGVMLAGGTQMLAVYALMQVLAEKLSLLWRPENIVVGTTRWVAEDPTGDTVGLAQEIGCVPLMATQLHFDESCYPQ LQAYERGYVKEGVGCGGCAITAHLYRNWNQTQLLKAVEDLFASFIFLE >Mature_368_residues MIRVYTQRQQGKNWLQRYQGYKPIFGCILGFTDTGLIPGISAAGATPQDRQYTCLADIEFLYNGLQLQPQYPLPPLEAGA SPVLITKAIIDTLNIPLYLFNAGLYHKPTVPTIDLGGAPARCLTSGHALDLATIQHLLEVGSYWGRKLADEAKDSYVILG ECVVGGTTTALAVLLGLGIGAIGKVNSSHPQCNHDQKLAVVHQGLQEAGFHSALPVSEPLKLVAAVGDPMQIVVAGMGMA ASLKVGVMLAGGTQMLAVYALMQVLAEKLSLLWRPENIVVGTTRWVAEDPTGDTVGLAQEIGCVPLMATQLHFDESCYPQ LQAYERGYVKEGVGCGGCAITAHLYRNWNQTQLLKAVEDLFASFIFLE
Specific function: Unknown
COG id: COG2038
COG function: function code H; NaMN:DMB phosphoribosyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0284 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y1555_TRIEI (Q115I9)
Other databases:
- EMBL: CP000393 - RefSeq: YP_721308.1 - STRING: Q115I9 - GeneID: 4242034 - GenomeReviews: CP000393_GR - KEGG: ter:Tery_1555 - NMPDR: fig|203124.1.peg.5652 - eggNOG: COG2038 - HOGENOM: HBG497525 - OMA: QMLAVYA - ProtClustDB: PRK04447 - BioCyc: TERY203124:TERY_1555-MONOMER - HAMAP: MF_01086 - InterPro: IPR003200 - InterPro: IPR002805 - TIGRFAMs: TIGR00303
Pfam domain/function: PF02277 DBI_PRT; SSF52733 NN:DBI_PRT
EC number: NA
Molecular weight: Translated: 39565; Mature: 39565
Theoretical pI: Translated: 6.03; Mature: 6.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRVYTQRQQGKNWLQRYQGYKPIFGCILGFTDTGLIPGISAAGATPQDRQYTCLADIEF CEEEECCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEHEEHHH LYNGLQLQPQYPLPPLEAGASPVLITKAIIDTLNIPLYLFNAGLYHKPTVPTIDLGGAPA HHCCCEECCCCCCCCHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEECCCCCH RCLTSGHALDLATIQHLLEVGSYWGRKLADEAKDSYVILGECVVGGTTTALAVLLGLGIG HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHCCC AIGKVNSSHPQCNHDQKLAVVHQGLQEAGFHSALPVSEPLKLVAAVGDPMQIVVAGMGMA CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCC ASLKVGVMLAGGTQMLAVYALMQVLAEKLSLLWRPENIVVGTTRWVAEDPTGDTVGLAQE EEEEEEEEEECCHHHHHHHHHHHHHHHHHHHEECCCCEEEECEEEEECCCCCCCHHHHHH IGCVPLMATQLHFDESCYPQLQAYERGYVKEGVGCGGCAITAHLYRNWNQTQLLKAVEDL CCCHHHHHHHHCCCCCCCHHHHHHHCCHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH FASFIFLE HHHHHCCC >Mature Secondary Structure MIRVYTQRQQGKNWLQRYQGYKPIFGCILGFTDTGLIPGISAAGATPQDRQYTCLADIEF CEEEECCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEHEEHHH LYNGLQLQPQYPLPPLEAGASPVLITKAIIDTLNIPLYLFNAGLYHKPTVPTIDLGGAPA HHCCCEECCCCCCCCHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEECCCCCH RCLTSGHALDLATIQHLLEVGSYWGRKLADEAKDSYVILGECVVGGTTTALAVLLGLGIG HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHCCC AIGKVNSSHPQCNHDQKLAVVHQGLQEAGFHSALPVSEPLKLVAAVGDPMQIVVAGMGMA CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCC ASLKVGVMLAGGTQMLAVYALMQVLAEKLSLLWRPENIVVGTTRWVAEDPTGDTVGLAQE EEEEEEEEEECCHHHHHHHHHHHHHHHHHHHEECCCCEEEECEEEEECCCCCCCHHHHHH IGCVPLMATQLHFDESCYPQLQAYERGYVKEGVGCGGCAITAHLYRNWNQTQLLKAVEDL CCCHHHHHHHHCCCCCCCHHHHHHHCCHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH FASFIFLE HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA