| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is ppa [H]
Identifier: 113475215
GI number: 113475215
Start: 2309270
End: 2309782
Strand: Direct
Name: ppa [H]
Synonym: Tery_1519
Alternate gene names: 113475215
Gene position: 2309270-2309782 (Clockwise)
Preceding gene: 113475214
Following gene: 113475221
Centisome position: 29.8
GC content: 36.84
Gene sequence:
>513_bases GTGGATTTATCGTTAATTCCGGCTCAACCAAAACCTGGACTAATAAATGTTTTAATAGAAATTACTGGCGGAAGTAAAAA TAAATACGAATTTGATAAAGATTTACAAGCTTTTGCCCTTGACCGTGTACTATATTCTTCTGTACAATATCCTTATGACT ATGGTTTTGTCCCTAATACCCTAGCAGATGATGGTGATCCCCTTGATGGAATAGTAATTATGGATGAGCCAACATTTCCT GGATGTGTTATTCCAGCAAGACCTGTAGGTATGTTAGAAATGATCGACGGAGGAGATAGAGACGAAAAAATTCTCTGTGT TCCAGATAAAGACCCGCGCTATACTGAGGTTAAATCTCTCAAAGATGTAGCACATCATCGACTAGAAGAAATAGCTGAAT TTTTCAGGACTTATAAAAACCTAGAAAAAAAGGTGACAGAAATACTTGGCTGGAAAGATGTTGAGCATGTAATGCCATTA GTAGAGAAATGCGTTAAAGCTGCAAGTAAGTAA
Upstream 100 bases:
>100_bases TGGGCCTGGAATCTTACTATTCCCGGTGCTAATTCGTGGAGCCCGAGTAGTTCATCCCAACTCTTGATATACTCTTTTTT AGTTAATATGGAGAAATATT
Downstream 100 bases:
>100_bases TATTAATTCTAGTATCTTCAGAGTTAAAAAAAATTTAGGGGTGGGTTTTCTAGAGATTTTACTTGAATAAAAACCTACCC CTACTTTTTAAAAAAACTAG
Product: inorganic diphosphatase
Products: NA
Alternate protein names: Pyrophosphate phospho-hydrolase; PPase [H]
Number of amino acids: Translated: 170; Mature: 170
Protein sequence:
>170_residues MDLSLIPAQPKPGLINVLIEITGGSKNKYEFDKDLQAFALDRVLYSSVQYPYDYGFVPNTLADDGDPLDGIVIMDEPTFP GCVIPARPVGMLEMIDGGDRDEKILCVPDKDPRYTEVKSLKDVAHHRLEEIAEFFRTYKNLEKKVTEILGWKDVEHVMPL VEKCVKAASK
Sequences:
>Translated_170_residues MDLSLIPAQPKPGLINVLIEITGGSKNKYEFDKDLQAFALDRVLYSSVQYPYDYGFVPNTLADDGDPLDGIVIMDEPTFP GCVIPARPVGMLEMIDGGDRDEKILCVPDKDPRYTEVKSLKDVAHHRLEEIAEFFRTYKNLEKKVTEILGWKDVEHVMPL VEKCVKAASK >Mature_170_residues MDLSLIPAQPKPGLINVLIEITGGSKNKYEFDKDLQAFALDRVLYSSVQYPYDYGFVPNTLADDGDPLDGIVIMDEPTFP GCVIPARPVGMLEMIDGGDRDEKILCVPDKDPRYTEVKSLKDVAHHRLEEIAEFFRTYKNLEKKVTEILGWKDVEHVMPL VEKCVKAASK
Specific function: Hydrolyzes PPi generated in anabolic reactions [H]
COG id: COG0221
COG function: function code C; Inorganic pyrophosphatase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PPase family [H]
Homologues:
Organism=Escherichia coli, GI1790673, Length=160, Percent_Identity=38.75, Blast_Score=99, Evalue=2e-22,
Paralogues:
None
Copy number: 5480 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 200 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008162 [H]
Pfam domain/function: PF00719 Pyrophosphatase [H]
EC number: =3.6.1.1 [H]
Molecular weight: Translated: 19143; Mature: 19143
Theoretical pI: Translated: 4.60; Mature: 4.60
Prosite motif: PS00387 PPASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLSLIPAQPKPGLINVLIEITGGSKNKYEFDKDLQAFALDRVLYSSVQYPYDYGFVPNT CCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC LADDGDPLDGIVIMDEPTFPGCVIPARPVGMLEMIDGGDRDEKILCVPDKDPRYTEVKSL CCCCCCCCCCEEEEECCCCCCEECCCCCCCHHEECCCCCCCCEEEEECCCCCCHHHHHHH KDVAHHRLEEIAEFFRTYKNLEKKVTEILGWKDVEHVMPLVEKCVKAASK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure MDLSLIPAQPKPGLINVLIEITGGSKNKYEFDKDLQAFALDRVLYSSVQYPYDYGFVPNT CCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC LADDGDPLDGIVIMDEPTFPGCVIPARPVGMLEMIDGGDRDEKILCVPDKDPRYTEVKSL CCCCCCCCCCEEEEECCCCCCEECCCCCCCHHEECCCCCCCCEEEEECCCCCCHHHHHHH KDVAHHRLEEIAEFFRTYKNLEKKVTEILGWKDVEHVMPLVEKCVKAASK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]