| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is yegM [C]
Identifier: 113475147
GI number: 113475147
Start: 2179545
End: 2181449
Strand: Reverse
Name: yegM [C]
Synonym: Tery_1441
Alternate gene names: 113475147
Gene position: 2181449-2179545 (Counterclockwise)
Preceding gene: 113475149
Following gene: 113475146
Centisome position: 28.15
GC content: 41.84
Gene sequence:
>1905_bases ATGCTAACTCATAATTCATCAAATTCAGCTGTTCAAGAAAAACTTAGATCCATAGAAAATTTACAAGAAAATACTAAAAC AGAATTATATCAAGAGGAAAAAAATACGATTCCTCAATGGTATCGATCTGACAAAAAGAATTTTTCTGTTCTACTTTTGG CAACAATAATTACTACAACTCTCGGAGTAGGATTCGTGGGAGGACAATGGTGGCAATCTCATAGCAATAAAACACCAAAC GAAACATCAGCAGTACCGCCAAGTAGACGAAGAAGTACTCTGGTTAAAGTAATGCCAATAAAAACTATCTCCCTCCAAGA AACTTCAGAATTTGTGGGAACGATGGAGGCAACGCGGTCTATTAAAATTAAGCCAGAAATAGATGGTAGGGTGGTAGAAA TTTTAGTAAAGGAAGGAACTTTTGTCTCTGAAGGGCAGGCGATCGCTAAACTCAAAAGTGATAATGTGGAAGCCAACTTA AAGAGAGCCAAAGCTAACCTCCAACAAAGTGAAGCACGTTTAGCACAACTGAGAATAGGAGCAAGACCAGAAAAAATTGC AGCAGCTAGAGCCCGTCTCCAACAATCTCAGGCTAGGTTGGCTGAAATGAAAAGAGGCACGCGACCAGAAAAAATTGCAG CAGCCAGAGCCCGTCTCCAGCAATCTCAGGCTAGGTTAGCTGAACTGCGGGCGGGTACTCGTGATGAAGAGATTGCTCAA GCAAAAGCAGAATTACAAGAGGCAAAAGTACGATTAGAAAATGCTAGATCCGGTGGTCTTTTAGAAGAAATTGCCCAAGC AAAAGCGCAAATAAAAGTACAACAGGCAGAATTAGAATTAGCTAGTGAACAAGTCAAGCGAAACCAAAACTTAAGAGCAG AAGGAGCGATCGCTGAGTTAACTTTTCAGGAAATTTTTCAAGAAGAGAAAGCAGCTCAGGCAAGGGTAGAAGAAGCAAAA AGACGAGTGACGCAATTGCAAAGAAATAGAGAATCTACAATTCAAACATTAGAAGCAGCGGTAGAACAACAACGCCAGAT ATTGAGAAGGCTAAAAAATGGTACTCGCCCTGAAGAAATTACTAGGGTAGAGGCGGAGGTAGGGGAGGCTCGCAATAATT TAGAGGAGTTGCAAAATGGCACTCGCCTTGAAGAAATTGCTAGGGCAGAGGCGGAGGTAGCGGAGGCTCGTAGTAATTTA GAAGAGTTGCAAAATGGCACTCGCCCTGAAGAAATTGCTGAGGGCTTGGCAGAGGTAGCAGCAGCATTAGCAGAGGTAGA TAGTTGGCAGGCTGAGTTTGAGGAGACAGTAGTTGTAGCTCCTTTTGCAGGTGTGATTGGAGATATGATTGTGAAGATTG GGGATTTTGTTAATGATGGTGACATTATGACTACTGTGACGGCAAATCAGGTATTGAGTGTAAATTTACTAATTCCGTTA GAGCGACTAGGAGATTTGTGGTTGGGTTTACCTGTGGAGGTTAGGAGTCCTGAAGGTAAGGTTTTGGGAATGGGTAAGGT TAGTTTTATTTCTCCTACTGTTAGTGATTCTCAAACTGTTTTGGTTAAGGTAGATGTGGATAATAGTTCTGGAAAGTTAC AAGACGGTCAGTTTGTGCAAACTAATGTGATTTGGGAGCAGCGTCAAGCTGTAGTTGTGCCGATGACAGCAGTGGGTTTT GAAGGGGAAACACGGTTTGTGTATTTGTTGGAGGGAGAAGGTGAAGAGCAAAAGGCAAGGCGTCAAATAATTGAGTTGGG TTTGGTTAAGGGTGATATGACTGAGGTAATGTCTGGTTTAGAGCCTGGGGATAATTTGATTGTTTCGGGTTTACAGAAGT TGAATGATGGAGCTACTGTGAAGATTTTGAATTCAGGGAAAAGAGATGGGAAGTCAAAATTATAG
Upstream 100 bases:
>100_bases AAATGATAAATTTTCATCTAAGAAAGTAGAAAAAAATGCATTTTTACTCTAATATTAATTGGCTAAATAATTATTAAAAA AAATCAAAATAAAATAAAAA
Downstream 100 bases:
>100_bases ATTTCATATTAAATTAGACTTATGCAAAATATTAAGATATCAAGTTATATAGTGTTTGTAGGACTTGAAAGAGCTAGATA GTGGTAAAACGCTTTCTTTT
Product: RND family efflux transporter MFP subunit
Products: NA
Alternate protein names: Efflux Transporter RND Family MFP Subunit; Secretion Protein HlyD; HlyD Family Secretion Protein; Membrane-Fusion Protein; RND Efflux Membrane Fusion Protein; Auxiliary Transport Protein MFP Family; RND Family Efflux Transporter Subunit MFP; HAE1 Family Efflux Transporter MFP Subunit; Periplasmic Component Of Efflux System; Membrane Fusion Protein; HlyD-Like Secretion Protein; Secretion Protein; RND Family Efflux Transporter; Multidrug Efflux Transporter; Efflux Transporter RND Family MFP Subunit Subfamily; Secretion Protein Hlyd; Multidrug RND Transporter Membrane Fusion Protein; Acriflavine Resistance Protein E; Efflux Transporter Hae1 Family; HlyD Family Protein Secretion Protein; Cation/Multidrug Efflux System Mebrane-Fusion Component; Secretion Protein HlyD Family Protein; RND Efflux Membrane-Fusion Protein; HlyD-Family Secretion Protein; HlyD Family-Like Protein; Cation Efflux System; Hlyd-Like Secretion Protein; Multidrug Efflux System Inner Membrane Protein; Secretion Protein HlyD-Like Protein; Multidrug Efflux System Subunit A; Secretion Protein HlyD Family; Secretion Protein Family Hlyd; RND Efflux Transporter; Periplasmic Multidrug Efflux Lipoprotein; Efflux Transporter Rnd Family Mfp Subunit; Efflux System
Number of amino acids: Translated: 634; Mature: 634
Protein sequence:
>634_residues MLTHNSSNSAVQEKLRSIENLQENTKTELYQEEKNTIPQWYRSDKKNFSVLLLATIITTTLGVGFVGGQWWQSHSNKTPN ETSAVPPSRRRSTLVKVMPIKTISLQETSEFVGTMEATRSIKIKPEIDGRVVEILVKEGTFVSEGQAIAKLKSDNVEANL KRAKANLQQSEARLAQLRIGARPEKIAAARARLQQSQARLAEMKRGTRPEKIAAARARLQQSQARLAELRAGTRDEEIAQ AKAELQEAKVRLENARSGGLLEEIAQAKAQIKVQQAELELASEQVKRNQNLRAEGAIAELTFQEIFQEEKAAQARVEEAK RRVTQLQRNRESTIQTLEAAVEQQRQILRRLKNGTRPEEITRVEAEVGEARNNLEELQNGTRLEEIARAEAEVAEARSNL EELQNGTRPEEIAEGLAEVAAALAEVDSWQAEFEETVVVAPFAGVIGDMIVKIGDFVNDGDIMTTVTANQVLSVNLLIPL ERLGDLWLGLPVEVRSPEGKVLGMGKVSFISPTVSDSQTVLVKVDVDNSSGKLQDGQFVQTNVIWEQRQAVVVPMTAVGF EGETRFVYLLEGEGEEQKARRQIIELGLVKGDMTEVMSGLEPGDNLIVSGLQKLNDGATVKILNSGKRDGKSKL
Sequences:
>Translated_634_residues MLTHNSSNSAVQEKLRSIENLQENTKTELYQEEKNTIPQWYRSDKKNFSVLLLATIITTTLGVGFVGGQWWQSHSNKTPN ETSAVPPSRRRSTLVKVMPIKTISLQETSEFVGTMEATRSIKIKPEIDGRVVEILVKEGTFVSEGQAIAKLKSDNVEANL KRAKANLQQSEARLAQLRIGARPEKIAAARARLQQSQARLAEMKRGTRPEKIAAARARLQQSQARLAELRAGTRDEEIAQ AKAELQEAKVRLENARSGGLLEEIAQAKAQIKVQQAELELASEQVKRNQNLRAEGAIAELTFQEIFQEEKAAQARVEEAK RRVTQLQRNRESTIQTLEAAVEQQRQILRRLKNGTRPEEITRVEAEVGEARNNLEELQNGTRLEEIARAEAEVAEARSNL EELQNGTRPEEIAEGLAEVAAALAEVDSWQAEFEETVVVAPFAGVIGDMIVKIGDFVNDGDIMTTVTANQVLSVNLLIPL ERLGDLWLGLPVEVRSPEGKVLGMGKVSFISPTVSDSQTVLVKVDVDNSSGKLQDGQFVQTNVIWEQRQAVVVPMTAVGF EGETRFVYLLEGEGEEQKARRQIIELGLVKGDMTEVMSGLEPGDNLIVSGLQKLNDGATVKILNSGKRDGKSKL >Mature_634_residues MLTHNSSNSAVQEKLRSIENLQENTKTELYQEEKNTIPQWYRSDKKNFSVLLLATIITTTLGVGFVGGQWWQSHSNKTPN ETSAVPPSRRRSTLVKVMPIKTISLQETSEFVGTMEATRSIKIKPEIDGRVVEILVKEGTFVSEGQAIAKLKSDNVEANL KRAKANLQQSEARLAQLRIGARPEKIAAARARLQQSQARLAEMKRGTRPEKIAAARARLQQSQARLAELRAGTRDEEIAQ AKAELQEAKVRLENARSGGLLEEIAQAKAQIKVQQAELELASEQVKRNQNLRAEGAIAELTFQEIFQEEKAAQARVEEAK RRVTQLQRNRESTIQTLEAAVEQQRQILRRLKNGTRPEEITRVEAEVGEARNNLEELQNGTRLEEIARAEAEVAEARSNL EELQNGTRPEEIAEGLAEVAAALAEVDSWQAEFEETVVVAPFAGVIGDMIVKIGDFVNDGDIMTTVTANQVLSVNLLIPL ERLGDLWLGLPVEVRSPEGKVLGMGKVSFISPTVSDSQTVLVKVDVDNSSGKLQDGQFVQTNVIWEQRQAVVVPMTAVGF EGETRFVYLLEGEGEEQKARRQIIELGLVKGDMTEVMSGLEPGDNLIVSGLQKLNDGATVKILNSGKRDGKSKL
Specific function: Unknown
COG id: COG0845
COG function: function code M; Membrane-fusion protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 70083; Mature: 70083
Theoretical pI: Translated: 5.22; Mature: 5.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTHNSSNSAVQEKLRSIENLQENTKTELYQEEKNTIPQWYRSDKKNFSVLLLATIITTT CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHH LGVGFVGGQWWQSHSNKTPNETSAVPPSRRRSTLVKVMPIKTISLQETSEFVGTMEATRS HHCCCCCCHHHHHCCCCCCCCCCCCCCCHHHCCEEEEEEEEEECHHHHHHHHHHHHHCCE IKIKPEIDGRVVEILVKEGTFVSEGQAIAKLKSDNVEANLKRAKANLQQSEARLAQLRIG EEECCCCCCCEEEEEECCCCEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC ARPEKIAAARARLQQSQARLAEMKRGTRPEKIAAARARLQQSQARLAELRAGTRDEEIAQ CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH AKAELQEAKVRLENARSGGLLEEIAQAKAQIKVQQAELELASEQVKRNQNLRAEGAIAEL HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH TFQEIFQEEKAAQARVEEAKRRVTQLQRNRESTIQTLEAAVEQQRQILRRLKNGTRPEEI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH TRVEAEVGEARNNLEELQNGTRLEEIARAEAEVAEARSNLEELQNGTRPEEIAEGLAEVA HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH AALAEVDSWQAEFEETVVVAPFAGVIGDMIVKIGDFVNDGDIMTTVTANQVLSVNLLIPL HHHHHHHHHHHHHHCEEEEECHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEEEEH ERLGDLWLGLPVEVRSPEGKVLGMGKVSFISPTVSDSQTVLVKVDVDNSSGKLQDGQFVQ HHHCHHHCCCCEEEECCCCCEEECCCEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEE TNVIWEQRQAVVVPMTAVGFEGETRFVYLLEGEGEEQKARRQIIELGLVKGDMTEVMSGL EHHHHHCCCEEEEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHCCC EPGDNLIVSGLQKLNDGATVKILNSGKRDGKSKL CCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCC >Mature Secondary Structure MLTHNSSNSAVQEKLRSIENLQENTKTELYQEEKNTIPQWYRSDKKNFSVLLLATIITTT CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHH LGVGFVGGQWWQSHSNKTPNETSAVPPSRRRSTLVKVMPIKTISLQETSEFVGTMEATRS HHCCCCCCHHHHHCCCCCCCCCCCCCCCHHHCCEEEEEEEEEECHHHHHHHHHHHHHCCE IKIKPEIDGRVVEILVKEGTFVSEGQAIAKLKSDNVEANLKRAKANLQQSEARLAQLRIG EEECCCCCCCEEEEEECCCCEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC ARPEKIAAARARLQQSQARLAEMKRGTRPEKIAAARARLQQSQARLAELRAGTRDEEIAQ CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH AKAELQEAKVRLENARSGGLLEEIAQAKAQIKVQQAELELASEQVKRNQNLRAEGAIAEL HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH TFQEIFQEEKAAQARVEEAKRRVTQLQRNRESTIQTLEAAVEQQRQILRRLKNGTRPEEI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH TRVEAEVGEARNNLEELQNGTRLEEIARAEAEVAEARSNLEELQNGTRPEEIAEGLAEVA HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH AALAEVDSWQAEFEETVVVAPFAGVIGDMIVKIGDFVNDGDIMTTVTANQVLSVNLLIPL HHHHHHHHHHHHHHCEEEEECHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEEEEH ERLGDLWLGLPVEVRSPEGKVLGMGKVSFISPTVSDSQTVLVKVDVDNSSGKLQDGQFVQ HHHCHHHCCCCEEEECCCCCEEECCCEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEE TNVIWEQRQAVVVPMTAVGFEGETRFVYLLEGEGEEQKARRQIIELGLVKGDMTEVMSGL EHHHHHCCCEEEEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHCCC EPGDNLIVSGLQKLNDGATVKILNSGKRDGKSKL CCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA