Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113475114

Identifier: 113475114

GI number: 113475114

Start: 2133698

End: 2135026

Strand: Direct

Name: 113475114

Synonym: Tery_1403

Alternate gene names: NA

Gene position: 2133698-2135026 (Clockwise)

Preceding gene: 113475113

Following gene: 113475115

Centisome position: 27.53

GC content: 31.9

Gene sequence:

>1329_bases
ATGATCAAAATTAAAAACTTATTTATAACCAGCAGTTTTTTTTGCCTTTACCTTTCAACTTCTTGTTTAGCAAAAACTAA
TGAGTTTCCTGAATATACTCTAAAAAAAATATCTATAAATATTATTTCTCAACGTCAAATAGAAAAAGAAGAGGAGTTAG
AATCTCTAGATATATTTTCTCCTAATCCTCTAGAAAATACTAAACCAGATCCACTATTACCAAATCCTCCTACTTCTGGA
ATTATAACTGGAGAAAAACGAGAAAAACTTTCTCAGAAACTCGAGCAACTTAATGTTGAAGCAGCAGCATTATTAGCAGC
AGGAGACAAAACTAAAGCTTTTGAAATTTGGAACAGAGAATTACGTTTGCGTCGTTATCTTGGTCAAGTAGAAGAGTTAG
CAGCTTTGTCAAGAGTTGCTGAAATAGCTTGGGATAATAGTCAAAAATTACAGGTGCAATGGATTACAAAAAGACTCCAA
ATTATACAACCAGAAATTCAACGGGAAGAACCTCCTAATTTTGAATTATTACAAGCATTAGGTTCAGCATTTAATACAGT
TCGAGCTAAAGATTCAGCAGTTGAAGTTTATCAACAGGTTATTAGTGAGGCAAGGAAACAAGAGGATTTTGTTACGCTAA
AACAAGCTTTAATATCTGTAGGAGAAATATATTTGAATTGGTTGGATTATGATAATGCAGCGATCGCCTATGAAGAATTA
TTAGATGTTCAGCAGCAGAGTAATTCAGAATTCTCTAAAATAGAAACAACAAATCCTTCTATAAATGGTAATTTTGAAAA
AGCAAATACTCTGAAACAATTAGCTTTCATTTATAGTCAAGGGGGGAAACTTTTACCAGCAATTACAGCTAAAGAAAGAT
TAGTAGATTTTTACGAAGGTCAACAAAATATTGCAGAAGTTTCAGAGATAAAAATTTCCATTGCTGAAAATTATGAGGAA
TTGGGAAGACTTAATCTTGCCAGTCAATACTATCAAGAAGCTTATAGTATTGCTCAATCAATTCAACAATTTTTAACTGC
CAGTGATGCTTTAGAAAATTTAGCAGCCCTCTATCTTTCTCAAGATGAAAAAGAGGCAGCAATTGAAATATATAAGGTAC
AATTATTAATGGTTCAACAGTTTGTTAATGTTTATGGTATGATGGAAATTTATGATCGGATGGGGCAAGTTTATGCGCAG
TTAAAGGCTTTTAGTTTCGCAATGTCATCTTTTCAAAAAGGTTTAGAATTATCGAGACAATTGGGTGGATATCGAGAAAG
TTATTTTCTACAAAAGCTTGAAAAATTGAATAGAAATAGAAATAAGTGA

Upstream 100 bases:

>100_bases
AAATATTTTTGTATTTTTTGAAATAAATCCCTCATACTACCTAAACCTTTATCCATTCGATATAATTATTAATCGTTGAA
ACACTAAAATAATAGTTAAA

Downstream 100 bases:

>100_bases
TTAGACTTAAATTTTTTAGTAGGCCTTGAGCAATATCTATCTTGGATATAAATTACTACTAGGGGTAGAATTTTTTGGGT
TTTTGTATTTGAGTAATATC

Product: hypothetical protein

Products: NA

Alternate protein names: Tetratricopeptide Domain Protein; Tetratricopeptide Repeat Domain Protein; Tetratricopeptide Domain-Containing Protein

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MIKIKNLFITSSFFCLYLSTSCLAKTNEFPEYTLKKISINIISQRQIEKEEELESLDIFSPNPLENTKPDPLLPNPPTSG
IITGEKREKLSQKLEQLNVEAAALLAAGDKTKAFEIWNRELRLRRYLGQVEELAALSRVAEIAWDNSQKLQVQWITKRLQ
IIQPEIQREEPPNFELLQALGSAFNTVRAKDSAVEVYQQVISEARKQEDFVTLKQALISVGEIYLNWLDYDNAAIAYEEL
LDVQQQSNSEFSKIETTNPSINGNFEKANTLKQLAFIYSQGGKLLPAITAKERLVDFYEGQQNIAEVSEIKISIAENYEE
LGRLNLASQYYQEAYSIAQSIQQFLTASDALENLAALYLSQDEKEAAIEIYKVQLLMVQQFVNVYGMMEIYDRMGQVYAQ
LKAFSFAMSSFQKGLELSRQLGGYRESYFLQKLEKLNRNRNK

Sequences:

>Translated_442_residues
MIKIKNLFITSSFFCLYLSTSCLAKTNEFPEYTLKKISINIISQRQIEKEEELESLDIFSPNPLENTKPDPLLPNPPTSG
IITGEKREKLSQKLEQLNVEAAALLAAGDKTKAFEIWNRELRLRRYLGQVEELAALSRVAEIAWDNSQKLQVQWITKRLQ
IIQPEIQREEPPNFELLQALGSAFNTVRAKDSAVEVYQQVISEARKQEDFVTLKQALISVGEIYLNWLDYDNAAIAYEEL
LDVQQQSNSEFSKIETTNPSINGNFEKANTLKQLAFIYSQGGKLLPAITAKERLVDFYEGQQNIAEVSEIKISIAENYEE
LGRLNLASQYYQEAYSIAQSIQQFLTASDALENLAALYLSQDEKEAAIEIYKVQLLMVQQFVNVYGMMEIYDRMGQVYAQ
LKAFSFAMSSFQKGLELSRQLGGYRESYFLQKLEKLNRNRNK
>Mature_442_residues
MIKIKNLFITSSFFCLYLSTSCLAKTNEFPEYTLKKISINIISQRQIEKEEELESLDIFSPNPLENTKPDPLLPNPPTSG
IITGEKREKLSQKLEQLNVEAAALLAAGDKTKAFEIWNRELRLRRYLGQVEELAALSRVAEIAWDNSQKLQVQWITKRLQ
IIQPEIQREEPPNFELLQALGSAFNTVRAKDSAVEVYQQVISEARKQEDFVTLKQALISVGEIYLNWLDYDNAAIAYEEL
LDVQQQSNSEFSKIETTNPSINGNFEKANTLKQLAFIYSQGGKLLPAITAKERLVDFYEGQQNIAEVSEIKISIAENYEE
LGRLNLASQYYQEAYSIAQSIQQFLTASDALENLAALYLSQDEKEAAIEIYKVQLLMVQQFVNVYGMMEIYDRMGQVYAQ
LKAFSFAMSSFQKGLELSRQLGGYRESYFLQKLEKLNRNRNK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50613; Mature: 50613

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKIKNLFITSSFFCLYLSTSCLAKTNEFPEYTLKKISINIISQRQIEKEEELESLDIFS
CEEEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCC
PNPLENTKPDPLLPNPPTSGIITGEKREKLSQKLEQLNVEAAALLAAGDKTKAFEIWNRE
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHH
LRLRRYLGQVEELAALSRVAEIAWDNSQKLQVQWITKRLQIIQPEIQREEPPNFELLQAL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCHHCCCCCCCHHHHHHH
GSAFNTVRAKDSAVEVYQQVISEARKQEDFVTLKQALISVGEIYLNWLDYDNAAIAYEEL
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
LDVQQQSNSEFSKIETTNPSINGNFEKANTLKQLAFIYSQGGKLLPAITAKERLVDFYEG
HHHHHHCCCCHHHEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHC
QQNIAEVSEIKISIAENYEELGRLNLASQYYQEAYSIAQSIQQFLTASDALENLAALYLS
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
QDEKEAAIEIYKVQLLMVQQFVNVYGMMEIYDRMGQVYAQLKAFSFAMSSFQKGLELSRQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGGYRESYFLQKLEKLNRNRNK
HCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIKIKNLFITSSFFCLYLSTSCLAKTNEFPEYTLKKISINIISQRQIEKEEELESLDIFS
CEEEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCC
PNPLENTKPDPLLPNPPTSGIITGEKREKLSQKLEQLNVEAAALLAAGDKTKAFEIWNRE
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHH
LRLRRYLGQVEELAALSRVAEIAWDNSQKLQVQWITKRLQIIQPEIQREEPPNFELLQAL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCHHCCCCCCCHHHHHHH
GSAFNTVRAKDSAVEVYQQVISEARKQEDFVTLKQALISVGEIYLNWLDYDNAAIAYEEL
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
LDVQQQSNSEFSKIETTNPSINGNFEKANTLKQLAFIYSQGGKLLPAITAKERLVDFYEG
HHHHHHCCCCHHHEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHC
QQNIAEVSEIKISIAENYEELGRLNLASQYYQEAYSIAQSIQQFLTASDALENLAALYLS
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
QDEKEAAIEIYKVQLLMVQQFVNVYGMMEIYDRMGQVYAQLKAFSFAMSSFQKGLELSRQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGGYRESYFLQKLEKLNRNRNK
HCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA