Click here to switch to the map view.

The map label for this gene is lepB1 [H]

Identifier: 113475047

GI number: 113475047

Start: 2000615

End: 2001211

Strand: Direct

Name: lepB1 [H]

Synonym: Tery_1310

Alternate gene names: 113475047

Gene position: 2000615-2001211 (Clockwise)

Preceding gene: 113475046

Following gene: 113475050

Centisome position: 25.81

GC content: 33.5

Gene sequence:

>597_bases
ATGACATCAGAAAAAGAATCCTCAAATCAACCAATTATAGATAATTCGACAACTCCCTGGTGGTTAAAAATATGGCAGGA
ACAAAAAGAAAATATTAAAGTTGTAGCGATCGCTCTATTCTTATCTTTATTAATCAGAATATTCATTGCGGAACCGAGAT
ATATACCATCAGATTCAATGATGCCTACCTTAAAAGTAGGCGATCGCCTAGTAATAGAAAAAATATCTTACAATTTTTAT
CCACCCACAACAGGTGATATCATCGTCTTTGAAGCACCCCAACAATTGCAACCCTACGGTTATACAAAAAATCAAGCTTT
TATCAAACGAATTATAGGTTTGCCAGGAGATACTATTAGAATTGAAAATGGTACAGTATATGTTAATGACCAACCCCTTA
CTGAAAATTATATTGCGGAACCTCCTGAATATGCTTTACCAACTTCAATTAAAATTCCTGAAGATAAATATTTTGTAATG
GGGGATAATCGCAACAACAGTAATGACTCTCATGTTTGGGGTTTTTTGCCTAGAAAAAATATTATAGGTAAGGCAGTATT
TCGTTTTTGGCCTTATCAAAGATTAGGATCAGTTTAA

Upstream 100 bases:

>100_bases
AAACAACTAAAAAGTAACTCGCTTATGGGCCCTATGGACGAGGCTTTAAAGCCAATTTTTTGTGTAAAATAGAAATAATC
AAAAATTTAAAACCATAAAA

Downstream 100 bases:

>100_bases
AATAATCAGAAGGAATTAATTTCTGCTAAAAGTATTAATGAATAATCAGTTTAATATCCCAGCTCTGAAGTTTAAAATTG
CAGAATATTCCGATAATTTC

Product: thylakoidal processing peptidase

Products: NA

Alternate protein names: SPase I-1; Leader peptidase I-1 [H]

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MTSEKESSNQPIIDNSTTPWWLKIWQEQKENIKVVAIALFLSLLIRIFIAEPRYIPSDSMMPTLKVGDRLVIEKISYNFY
PPTTGDIIVFEAPQQLQPYGYTKNQAFIKRIIGLPGDTIRIENGTVYVNDQPLTENYIAEPPEYALPTSIKIPEDKYFVM
GDNRNNSNDSHVWGFLPRKNIIGKAVFRFWPYQRLGSV

Sequences:

>Translated_198_residues
MTSEKESSNQPIIDNSTTPWWLKIWQEQKENIKVVAIALFLSLLIRIFIAEPRYIPSDSMMPTLKVGDRLVIEKISYNFY
PPTTGDIIVFEAPQQLQPYGYTKNQAFIKRIIGLPGDTIRIENGTVYVNDQPLTENYIAEPPEYALPTSIKIPEDKYFVM
GDNRNNSNDSHVWGFLPRKNIIGKAVFRFWPYQRLGSV
>Mature_197_residues
TSEKESSNQPIIDNSTTPWWLKIWQEQKENIKVVAIALFLSLLIRIFIAEPRYIPSDSMMPTLKVGDRLVIEKISYNFYP
PTTGDIIVFEAPQQLQPYGYTKNQAFIKRIIGLPGDTIRIENGTVYVNDQPLTENYIAEPPEYALPTSIKIPEDKYFVMG
DNRNNSNDSHVWGFLPRKNIIGKAVFRFWPYQRLGSV

Specific function: Unknown

COG id: COG0681

COG function: function code U; Signal peptidase I

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein (Potential) [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S26 family [H]

Homologues:

Organism=Escherichia coli, GI1788921, Length=144, Percent_Identity=32.6388888888889, Blast_Score=68, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000223
- InterPro:   IPR019758
- InterPro:   IPR019757
- InterPro:   IPR019756
- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056 [H]

Pfam domain/function: PF00717 Peptidase_S24 [H]

EC number: =3.4.21.89 [H]

Molecular weight: Translated: 22844; Mature: 22713

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: PS00501 SPASE_I_1 ; PS00760 SPASE_I_2 ; PS00761 SPASE_I_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSEKESSNQPIIDNSTTPWWLKIWQEQKENIKVVAIALFLSLLIRIFIAEPRYIPSDSM
CCCCCCCCCCCEECCCCCCHHHHEEHHHHCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCC
MPTLKVGDRLVIEKISYNFYPPTTGDIIVFEAPQQLQPYGYTKNQAFIKRIIGLPGDTIR
CCCHHCCCEEEEEEECCCCCCCCCCCEEEECCCHHCCCCCCCCHHHHHHHHHCCCCCEEE
IENGTVYVNDQPLTENYIAEPPEYALPTSIKIPEDKYFVMGDNRNNSNDSHVWGFLPRKN
EECCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEECCCCH
IIGKAVFRFWPYQRLGSV
HHHHHHHHHCCHHHHCCC
>Mature Secondary Structure 
TSEKESSNQPIIDNSTTPWWLKIWQEQKENIKVVAIALFLSLLIRIFIAEPRYIPSDSM
CCCCCCCCCCEECCCCCCHHHHEEHHHHCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCC
MPTLKVGDRLVIEKISYNFYPPTTGDIIVFEAPQQLQPYGYTKNQAFIKRIIGLPGDTIR
CCCHHCCCEEEEEEECCCCCCCCCCCEEEECCCHHCCCCCCCCHHHHHHHHHCCCCCEEE
IENGTVYVNDQPLTENYIAEPPEYALPTSIKIPEDKYFVMGDNRNNSNDSHVWGFLPRKN
EECCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEECCCCH
IIGKAVFRFWPYQRLGSV
HHHHHHHHHCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]