| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475035
Identifier: 113475035
GI number: 113475035
Start: 1972786
End: 1973562
Strand: Reverse
Name: 113475035
Synonym: Tery_1292
Alternate gene names: NA
Gene position: 1973562-1972786 (Counterclockwise)
Preceding gene: 113475038
Following gene: 113475033
Centisome position: 25.46
GC content: 30.5
Gene sequence:
>777_bases ATGAATAAAAATTTACCACAACTGCATCATATTTCTGGTTCTGATATTGCTGATCAGAGTTTAGATGAAATATCAACAAA AAGAAAGAGTAGAATTGTTAGTAGGTTCCTATCTCCTGCTTTGCAATTTTGGTTAAAATCACAATTAGAACAGGTAGAAC AATTAAAGGTTCATATTGAAGGAGGTGATCGCCAAATTATTACAGGTCAAATCCCACGAGTTTCTCTTGCTGCTTCTAAT GTCATTTTTCGAGGATTACATTTGACTGAGGTGAAATTATCTGCTACTGGTATTCGGATTAATATTGGTCAAATTATCAG GGGAAAAAAATTGAAAATCTTAGAATCTTTTCCTATATTTTGTCAGATTAAATGTCTTCAATCTGACTTTAATTCTAGTC TAAAATCTGGTCTTTTGTCTCAGGCTATTGTTGATTTTTTAACCCCACTATTACAGTCAGATTTTATAGAATGCCTAGAG AAACCTATTCGATTGTATGACCAAAAAGCTGAAATATTTACAGGTCATCTTAGTCTGTTTGCTAACTTTATGTCTAAGTT TGATGAAAAAATCCCAATAAATTTACATACTAGTTTAAAGCTTGCTACTAGTTGTAAATTATTGCTAGAAAATTTTGAAT TTCAAGTTTTACAAAAGTCTAATTATGACCTTTCAAATACCATCAAAGTAGATTTAGGTTCTGATGTTAAACTACAAGAA TTAACATTAGAATCTGGTCAACTTATTTGTCAAGGTAGCTTAATAGTTAAATCCTAA
Upstream 100 bases:
>100_bases CTACCCTAAATATTTAAAATCTGCTAGTTTATATATTTCTTATCTCTGGAAATAATTACACAATTGAGTATAGAGTATAC TAATCCTCATGGTGTCTTTA
Downstream 100 bases:
>100_bases ATTCAACTATTAAAATTATTATTAGGAGTAAGGTACAAAATTCATTCTAGATTTTAGGGAAAAGCAAATAATTTGAGAAC ACAAAAGAAGAAAAACAACT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 258; Mature: 258
Protein sequence:
>258_residues MNKNLPQLHHISGSDIADQSLDEISTKRKSRIVSRFLSPALQFWLKSQLEQVEQLKVHIEGGDRQIITGQIPRVSLAASN VIFRGLHLTEVKLSATGIRINIGQIIRGKKLKILESFPIFCQIKCLQSDFNSSLKSGLLSQAIVDFLTPLLQSDFIECLE KPIRLYDQKAEIFTGHLSLFANFMSKFDEKIPINLHTSLKLATSCKLLLENFEFQVLQKSNYDLSNTIKVDLGSDVKLQE LTLESGQLICQGSLIVKS
Sequences:
>Translated_258_residues MNKNLPQLHHISGSDIADQSLDEISTKRKSRIVSRFLSPALQFWLKSQLEQVEQLKVHIEGGDRQIITGQIPRVSLAASN VIFRGLHLTEVKLSATGIRINIGQIIRGKKLKILESFPIFCQIKCLQSDFNSSLKSGLLSQAIVDFLTPLLQSDFIECLE KPIRLYDQKAEIFTGHLSLFANFMSKFDEKIPINLHTSLKLATSCKLLLENFEFQVLQKSNYDLSNTIKVDLGSDVKLQE LTLESGQLICQGSLIVKS >Mature_258_residues MNKNLPQLHHISGSDIADQSLDEISTKRKSRIVSRFLSPALQFWLKSQLEQVEQLKVHIEGGDRQIITGQIPRVSLAASN VIFRGLHLTEVKLSATGIRINIGQIIRGKKLKILESFPIFCQIKCLQSDFNSSLKSGLLSQAIVDFLTPLLQSDFIECLE KPIRLYDQKAEIFTGHLSLFANFMSKFDEKIPINLHTSLKLATSCKLLLENFEFQVLQKSNYDLSNTIKVDLGSDVKLQE LTLESGQLICQGSLIVKS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29010; Mature: 29010
Theoretical pI: Translated: 8.74; Mature: 8.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKNLPQLHHISGSDIADQSLDEISTKRKSRIVSRFLSPALQFWLKSQLEQVEQLKVHIE CCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE GGDRQIITGQIPRVSLAASNVIFRGLHLTEVKLSATGIRINIGQIIRGKKLKILESFPIF CCCEEEEECCCCEEEHHHHHHHHCCCEEEEEEEEECEEEEEHHHHHCCCEEEEEECCCCE CQIKCLQSDFNSSLKSGLLSQAIVDFLTPLLQSDFIECLEKPIRLYDQKAEIFTGHLSLF EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH ANFMSKFDEKIPINLHTSLKLATSCKLLLENFEFQVLQKSNYDLSNTIKVDLGSDVKLQE HHHHHHHCCCCCEEEECCHHHHHHHHHHHHCCHHEEEECCCCCCCCEEEEECCCCCEEEE LTLESGQLICQGSLIVKS EEECCCCEEEECCEEECC >Mature Secondary Structure MNKNLPQLHHISGSDIADQSLDEISTKRKSRIVSRFLSPALQFWLKSQLEQVEQLKVHIE CCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE GGDRQIITGQIPRVSLAASNVIFRGLHLTEVKLSATGIRINIGQIIRGKKLKILESFPIF CCCEEEEECCCCEEEHHHHHHHHCCCEEEEEEEEECEEEEEHHHHHCCCEEEEEECCCCE CQIKCLQSDFNSSLKSGLLSQAIVDFLTPLLQSDFIECLEKPIRLYDQKAEIFTGHLSLF EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH ANFMSKFDEKIPINLHTSLKLATSCKLLLENFEFQVLQKSNYDLSNTIKVDLGSDVKLQE HHHHHHHCCCCCEEEECCHHHHHHHHHHHHCCHHEEEECCCCCCCCEEEEECCCCCEEEE LTLESGQLICQGSLIVKS EEECCCCEEEECCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA