| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474936
Identifier: 113474936
GI number: 113474936
Start: 1823465
End: 1824130
Strand: Reverse
Name: 113474936
Synonym: Tery_1163
Alternate gene names: NA
Gene position: 1824130-1823465 (Counterclockwise)
Preceding gene: 113474937
Following gene: 113474935
Centisome position: 23.54
GC content: 35.89
Gene sequence:
>666_bases ATGCGTCTTCCTTTACCCCAGTTTGCTAATACAAATCACCAAAATAATTACATAGCTGAAGTGATAGAAACGGCAACTAC AGAGTTTTTAGCTCAATGTTTAGAACCAAAAGAATTAGATTTTCCTATGATGCCTGCTTTTGGTACTTGGGTAAAGTCTC AAGATGAACAATCACAAAATATGATTTATGGGGTAGTTTATTATGCTACTACTTTGCCGGTTGATTCTGTACATAGAGCT AGAGCTTTAGGAATGTCTCTACCTGAATTAAGGGAGCAACAACCGCAAATTTTCGCTATGTTAAAGACAGAGTTTCGAGC AGCAATAGTCGGTTTTTCTTCCCCAGAAAATTTGAATGGTTCTCAAACAGAAAATGGTAGGATTTATCAGTATATTCCAC CTCGTCCACCTCAAATTCATCAGGGAGTCTATTTATGTGAACCGAAAGAAATAATTAGGTTTAGTGATCAGTTAGATTTT TTACGGACATTGTTACAGTTAAGTAATGCTCCTGTTGATGCTTTGGTTGCAGCTACTATTCGAGAAATTTATCAACTCAG AAAAGCGGATCGTAATTGGTTAGTTCAAGCAGGTAGAAATATGAGTGTTCTACTTAGAGATGATTATGATCGCTTAAAAA TAATTTTAGGCCAAATACACCCTTAA
Upstream 100 bases:
>100_bases TCGTGGTTAAATGAAACCTTTGGGTTTTATTGAAGGTGTCCCTACCAACTATATGCCAAACAGCTTACTGATAACTGATA ATTGATTACTGATAATACTT
Downstream 100 bases:
>100_bases TTAATGGATAATTGATAGTAATCTTGAATAGGTTGTATTATTCAATAGAGCTCATATCGCATCCTTTATCGAATCCCTTT TGGTAATATTAAATAATATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 221; Mature: 221
Protein sequence:
>221_residues MRLPLPQFANTNHQNNYIAEVIETATTEFLAQCLEPKELDFPMMPAFGTWVKSQDEQSQNMIYGVVYYATTLPVDSVHRA RALGMSLPELREQQPQIFAMLKTEFRAAIVGFSSPENLNGSQTENGRIYQYIPPRPPQIHQGVYLCEPKEIIRFSDQLDF LRTLLQLSNAPVDALVAATIREIYQLRKADRNWLVQAGRNMSVLLRDDYDRLKIILGQIHP
Sequences:
>Translated_221_residues MRLPLPQFANTNHQNNYIAEVIETATTEFLAQCLEPKELDFPMMPAFGTWVKSQDEQSQNMIYGVVYYATTLPVDSVHRA RALGMSLPELREQQPQIFAMLKTEFRAAIVGFSSPENLNGSQTENGRIYQYIPPRPPQIHQGVYLCEPKEIIRFSDQLDF LRTLLQLSNAPVDALVAATIREIYQLRKADRNWLVQAGRNMSVLLRDDYDRLKIILGQIHP >Mature_221_residues MRLPLPQFANTNHQNNYIAEVIETATTEFLAQCLEPKELDFPMMPAFGTWVKSQDEQSQNMIYGVVYYATTLPVDSVHRA RALGMSLPELREQQPQIFAMLKTEFRAAIVGFSSPENLNGSQTENGRIYQYIPPRPPQIHQGVYLCEPKEIIRFSDQLDF LRTLLQLSNAPVDALVAATIREIYQLRKADRNWLVQAGRNMSVLLRDDYDRLKIILGQIHP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25350; Mature: 25350
Theoretical pI: Translated: 6.12; Mature: 6.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLPLPQFANTNHQNNYIAEVIETATTEFLAQCLEPKELDFPMMPAFGTWVKSQDEQSQN CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCHH MIYGVVYYATTLPVDSVHRARALGMSLPELREQQPQIFAMLKTEFRAAIVGFSSPENLNG HEEEEEHHHHHCCHHHHHHHHHHCCCCHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCC SQTENGRIYQYIPPRPPQIHQGVYLCEPKEIIRFSDQLDFLRTLLQLSNAPVDALVAATI CCCCCCEEEEECCCCCCHHHCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH REIYQLRKADRNWLVQAGRNMSVLLRDDYDRLKIILGQIHP HHHHHHHHCCHHHHHHCCCCCEEEEECCHHHHHHHHHCCCC >Mature Secondary Structure MRLPLPQFANTNHQNNYIAEVIETATTEFLAQCLEPKELDFPMMPAFGTWVKSQDEQSQN CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCHH MIYGVVYYATTLPVDSVHRARALGMSLPELREQQPQIFAMLKTEFRAAIVGFSSPENLNG HEEEEEHHHHHCCHHHHHHHHHHCCCCHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCC SQTENGRIYQYIPPRPPQIHQGVYLCEPKEIIRFSDQLDFLRTLLQLSNAPVDALVAATI CCCCCCEEEEECCCCCCHHHCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH REIYQLRKADRNWLVQAGRNMSVLLRDDYDRLKIILGQIHP HHHHHHHHCCHHHHHHCCCCCEEEEECCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA