| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is recG [H]
Identifier: 113474931
GI number: 113474931
Start: 1815804
End: 1818287
Strand: Reverse
Name: recG [H]
Synonym: Tery_1158
Alternate gene names: 113474931
Gene position: 1818287-1815804 (Counterclockwise)
Preceding gene: 113474932
Following gene: 113474930
Centisome position: 23.46
GC content: 34.34
Gene sequence:
>2484_bases ATGAATAATGAAAAAGAAATGATAGACTGGGAAAGACTAAAAAAAGCTTTATTAGTGGAAGCAGGACGTGGATTTCAAAA TATCCAAGGTAAACAATATATATTTAATGACTTTTTAAGTATTAGTTTAAGTAAACCACCAATAATATTAAAAGGTTATC AAGATAAATTTGAGAAGTTTTCTAAAAAATTTGTCTCGTATCCAGAAATGACTAGAGAAGAACGGCAATATTTATTAGAA AAAACTCAGATTTTTTTAAATCAAATGCAGTCTTTATGTGTTAAAGAAAAAGAGAATGATAGACTAGAATTTCATTCATT GGAAATAACTGCAAAAATACAAAAAGATAATTCTAATTTTTCACAAAAATATACCAATAACCTGGAATTAGAACAGCTAC TTAAAGATGTAAAAAGTATCGGAATTAAAAATAGCGATCGCCTATCAACATTAGGATTATCTACAGTTAGAGATTTACTT TATTATTACCCAAGAGACCATATTGACTATGCCCGTCAAGTAAATATTCGTAACTTAGAAGCAGGAGAAACTGTTACTAT TATCGGTAAAATTAAAAGGTTCAATTGTTTTTCTAGTCCGAAAAATAAGAAATTAACTATTCTCGAACTTACTCTTACAG ATTCTACAGGGCAAATCAAAATTAGTCGCTTTTTTGCCGGACCTAGATTTAGTAATAAAGGTTGGCAAATGATGCAAAAA AAATTCTATCCAGTTGGTGCAACTGTTGCTGCTTCCGGTTTAGTTAAAGAAACTAAATATGGGAAAAATTTAGATAATCC AGAAATAGAAGTTTTGGATAGTGAAGGTAGTGAAATTGAGTCTATCAAAATTGGTCGTTTAGTACCAGTTTATCCTTTAA CAGAAGGAGTAGAAGCAGATGTTGTGAGACGGGCAATATTTAAAATTTTACCAAAAGCAGAAAATTTTTCAGAAACATTA CCAGAAATTTTTTTGAATCAATATCAATTAATAGATTTAAAAAATGCTATTAAAAATATTCATTTTCCTATAGATAGAGA TTGTTTAGCAGCAGCTCGCCGTCGGTTAGTTTTTGATGAATTTTTTTATCTACAATTAGGTTTATTAAAACGTCGGCAAC TGCAAAAAAAAACAGAGATAGGAGTAGCTCTACCTGTAACAGGAAAACTTATTAAAAAATTTTATAAATTACTGCCATTT CAATTAACTAATGCTCAAAAAAGAGTAGTCAATGAAATTCTCAGGGATCTACAAAAGCCTGAACCAATGAAAAGATTAGT ACAAGGAGATGTGGGCGCTGGAAAAACAGTAGTAGCAGTAGTTGCTATATTAGCAGCAGTTCAAGTTGGTTATCAAGCTG CTTTAATGGCACCAACAGAAGTATTAGCGGAACAACATTATGATAAATTAGTTACTTGGTTTAATCTCTTACATTTGCCA GTTGAATTATTAACAGGTTCGACAAAAATAGCAAAACGCCGGGAAATTTACTCTCAACTTGAGACTGGAGAATTACCAAT ATTAGTCGGTACTCATGCCCTAATTCAAGATACAGTCAACTTTCATAAATTAGGGTTAGTAGTAATAGATGAACAACACA GATTTGGGGTTCACCAAAGAGCAAAATTACAGCAAAAAGGTGAATCTCCCCACTTTTTAGCAATGACAGCTACTCCTATT CCCAGAACTTTAGCTTTGACATTACATGGAGATTTAGATGTTAGTCAAATAGATGAACTACCACCAGGAAGACAACCAAT TCAAACAACAAATTTGACTGGTAGACAACGTAAAAAAGCTTATGATTTAATCCGCAGAGAAATAGTTCAAGGTAGACAAG TTTATGTGGTTTTACCCTTAGTTGAAGAGTCAGAAAAATTGGATGTGAAATCTGCAATAGAAGAACATCAAAAATTAGCT GAAAAAATTTTTCCCGAGTTTCAGATAGGTTTGTTGCATGGCAGAATGAGCAGTGCAGAAAAAGACCAAGTTATTAGTAC ATTTCGGAATAATCAAACTCAGATTTTAGTATCTACTACTGTGGTGGAAGTGGGGGTAGATGTACCTAATGCCACAGTAA TGCTAATTGAAAATGCAGAAAGGTTTGGTTTATCTCAGTTACATCAGTTACGGGGACGAGTAGGTCGTGGTGTCCACCAT TCCTATTGCTTGTTGATGAGGGGTGCAGGTTCGACGGATGCTACAGAACGGTTGAAGGTTTTGGAGCAGTCTCAGGATGG GTTTTTTATTGCGGAAATGGATATGCGTTTGAGAGGTCCTGGTCAGGTATTGGGAACAAAGCAGTCGGGGTTACCGGATT TTGCTTTGGCAAGTTTGGTTGAGGATCAGGAGGTTTTGGAGTTAGCGCGGGGTGCTGCTTTACAGGTGATGGAAAAGGAT GAAAGTCTTAATAGTTGGCCCCTGTTAAGAAAGGAGTTGGAATGGCGGTATCAGAAGATGATGGGGGGATCAATTTTAAA TTAG
Upstream 100 bases:
>100_bases ATCTTTTACCGAATTTATTCTGTTTCTTACTCCCTACCCAGTAAAATAAATTTTATAGATGCAAAAAGTATTATATAAAT AATTTCTTAAATTAAATGCT
Downstream 100 bases:
>100_bases GGTGATAGGTTATATTGGTATATTTTTTCCTATATTTCCTATATTTCCTATATTTCCTATATTTCCTATATTTCCTATAT TTCCTATATTTATTATGTCC
Product: ATP-dependent DNA helicase RecG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 827; Mature: 827
Protein sequence:
>827_residues MNNEKEMIDWERLKKALLVEAGRGFQNIQGKQYIFNDFLSISLSKPPIILKGYQDKFEKFSKKFVSYPEMTREERQYLLE KTQIFLNQMQSLCVKEKENDRLEFHSLEITAKIQKDNSNFSQKYTNNLELEQLLKDVKSIGIKNSDRLSTLGLSTVRDLL YYYPRDHIDYARQVNIRNLEAGETVTIIGKIKRFNCFSSPKNKKLTILELTLTDSTGQIKISRFFAGPRFSNKGWQMMQK KFYPVGATVAASGLVKETKYGKNLDNPEIEVLDSEGSEIESIKIGRLVPVYPLTEGVEADVVRRAIFKILPKAENFSETL PEIFLNQYQLIDLKNAIKNIHFPIDRDCLAAARRRLVFDEFFYLQLGLLKRRQLQKKTEIGVALPVTGKLIKKFYKLLPF QLTNAQKRVVNEILRDLQKPEPMKRLVQGDVGAGKTVVAVVAILAAVQVGYQAALMAPTEVLAEQHYDKLVTWFNLLHLP VELLTGSTKIAKRREIYSQLETGELPILVGTHALIQDTVNFHKLGLVVIDEQHRFGVHQRAKLQQKGESPHFLAMTATPI PRTLALTLHGDLDVSQIDELPPGRQPIQTTNLTGRQRKKAYDLIRREIVQGRQVYVVLPLVEESEKLDVKSAIEEHQKLA EKIFPEFQIGLLHGRMSSAEKDQVISTFRNNQTQILVSTTVVEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGVHH SYCLLMRGAGSTDATERLKVLEQSQDGFFIAEMDMRLRGPGQVLGTKQSGLPDFALASLVEDQEVLELARGAALQVMEKD ESLNSWPLLRKELEWRYQKMMGGSILN
Sequences:
>Translated_827_residues MNNEKEMIDWERLKKALLVEAGRGFQNIQGKQYIFNDFLSISLSKPPIILKGYQDKFEKFSKKFVSYPEMTREERQYLLE KTQIFLNQMQSLCVKEKENDRLEFHSLEITAKIQKDNSNFSQKYTNNLELEQLLKDVKSIGIKNSDRLSTLGLSTVRDLL YYYPRDHIDYARQVNIRNLEAGETVTIIGKIKRFNCFSSPKNKKLTILELTLTDSTGQIKISRFFAGPRFSNKGWQMMQK KFYPVGATVAASGLVKETKYGKNLDNPEIEVLDSEGSEIESIKIGRLVPVYPLTEGVEADVVRRAIFKILPKAENFSETL PEIFLNQYQLIDLKNAIKNIHFPIDRDCLAAARRRLVFDEFFYLQLGLLKRRQLQKKTEIGVALPVTGKLIKKFYKLLPF QLTNAQKRVVNEILRDLQKPEPMKRLVQGDVGAGKTVVAVVAILAAVQVGYQAALMAPTEVLAEQHYDKLVTWFNLLHLP VELLTGSTKIAKRREIYSQLETGELPILVGTHALIQDTVNFHKLGLVVIDEQHRFGVHQRAKLQQKGESPHFLAMTATPI PRTLALTLHGDLDVSQIDELPPGRQPIQTTNLTGRQRKKAYDLIRREIVQGRQVYVVLPLVEESEKLDVKSAIEEHQKLA EKIFPEFQIGLLHGRMSSAEKDQVISTFRNNQTQILVSTTVVEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGVHH SYCLLMRGAGSTDATERLKVLEQSQDGFFIAEMDMRLRGPGQVLGTKQSGLPDFALASLVEDQEVLELARGAALQVMEKD ESLNSWPLLRKELEWRYQKMMGGSILN >Mature_827_residues MNNEKEMIDWERLKKALLVEAGRGFQNIQGKQYIFNDFLSISLSKPPIILKGYQDKFEKFSKKFVSYPEMTREERQYLLE KTQIFLNQMQSLCVKEKENDRLEFHSLEITAKIQKDNSNFSQKYTNNLELEQLLKDVKSIGIKNSDRLSTLGLSTVRDLL YYYPRDHIDYARQVNIRNLEAGETVTIIGKIKRFNCFSSPKNKKLTILELTLTDSTGQIKISRFFAGPRFSNKGWQMMQK KFYPVGATVAASGLVKETKYGKNLDNPEIEVLDSEGSEIESIKIGRLVPVYPLTEGVEADVVRRAIFKILPKAENFSETL PEIFLNQYQLIDLKNAIKNIHFPIDRDCLAAARRRLVFDEFFYLQLGLLKRRQLQKKTEIGVALPVTGKLIKKFYKLLPF QLTNAQKRVVNEILRDLQKPEPMKRLVQGDVGAGKTVVAVVAILAAVQVGYQAALMAPTEVLAEQHYDKLVTWFNLLHLP VELLTGSTKIAKRREIYSQLETGELPILVGTHALIQDTVNFHKLGLVVIDEQHRFGVHQRAKLQQKGESPHFLAMTATPI PRTLALTLHGDLDVSQIDELPPGRQPIQTTNLTGRQRKKAYDLIRREIVQGRQVYVVLPLVEESEKLDVKSAIEEHQKLA EKIFPEFQIGLLHGRMSSAEKDQVISTFRNNQTQILVSTTVVEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGVHH SYCLLMRGAGSTDATERLKVLEQSQDGFFIAEMDMRLRGPGQVLGTKQSGLPDFALASLVEDQEVLELARGAALQVMEKD ESLNSWPLLRKELEWRYQKMMGGSILN
Specific function: Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched dup
COG id: COG1200
COG function: function code LK; RecG-like helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367254, Length=679, Percent_Identity=42.120765832106, Blast_Score=432, Evalue=1e-122, Organism=Escherichia coli, GI1787357, Length=402, Percent_Identity=37.5621890547264, Blast_Score=261, Evalue=2e-70,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR004609 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR016027 - InterPro: IPR004365 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C; PF01336 tRNA_anti [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 94126; Mature: 94126
Theoretical pI: Translated: 9.61; Mature: 9.61
Prosite motif: PS00435 PEROXIDASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNEKEMIDWERLKKALLVEAGRGFQNIQGKQYIFNDFLSISLSKPPIILKGYQDKFEKF CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHEEECCCCCEEEECCHHHHHHH SKKFVSYPEMTREERQYLLEKTQIFLNQMQSLCVKEKENDRLEFHSLEITAKIQKDNSNF HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEECCCCCH SQKYTNNLELEQLLKDVKSIGIKNSDRLSTLGLSTVRDLLYYYPRDHIDYARQVNIRNLE HHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC AGETVTIIGKIKRFNCFSSPKNKKLTILELTLTDSTGQIKISRFFAGPRFSNKGWQMMQK CCCEEEEEEEHHHHCCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCCCHHHHHHH KFYPVGATVAASGLVKETKYGKNLDNPEIEVLDSEGSEIESIKIGRLVPVYPLTEGVEAD HCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCEEECCCEEECCCCCCCCHHH VVRRAIFKILPKAENFSETLPEIFLNQYQLIDLKNAIKNIHFPIDRDCLAAARRRLVFDE HHHHHHHHHCCCCCCHHHHHHHHHHCCHHEEEHHHHHHHCCCCCCHHHHHHHHHHHHHHH FFYLQLGLLKRRQLQKKTEIGVALPVTGKLIKKFYKLLPFQLTNAQKRVVNEILRDLQKP HHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHCCC EPMKRLVQGDVGAGKTVVAVVAILAAVQVGYQAALMAPTEVLAEQHYDKLVTWFNLLHLP CHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH VELLTGSTKIAKRREIYSQLETGELPILVGTHALIQDTVNFHKLGLVVIDEQHRFGVHQR HHHHCCCHHHHHHHHHHHHHCCCCCCEEECCHHHHHHCCCHHHEEEEEEECCHHCCCHHH AKLQQKGESPHFLAMTATPIPRTLALTLHGDLDVSQIDELPPGRQPIQTTNLTGRQRKKA HHHHHCCCCCCEEEEECCCCCCEEEEEEECCCCHHHHHCCCCCCCCCEECCCCCHHHHHH YDLIRREIVQGRQVYVVLPLVEESEKLDVKSAIEEHQKLAEKIFPEFQIGLLHGRMSSAE HHHHHHHHHCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHCCCCCCH KDQVISTFRNNQTQILVSTTVVEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGVHH HHHHHHHHCCCCEEEEEEEEEEEECCCCCCCEEEEEECCHHCCHHHHHHHHHHHCCCCCC SYCLLMRGAGSTDATERLKVLEQSQDGFFIAEMDMRLRGPGQVLGTKQSGLPDFALASLV EEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEECEEECCCCCEECCCCCCCCHHHHHHHH EDQEVLELARGAALQVMEKDESLNSWPLLRKELEWRYQKMMGGSILN CHHHHHHHHCCCCEEEHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MNNEKEMIDWERLKKALLVEAGRGFQNIQGKQYIFNDFLSISLSKPPIILKGYQDKFEKF CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHEEECCCCCEEEECCHHHHHHH SKKFVSYPEMTREERQYLLEKTQIFLNQMQSLCVKEKENDRLEFHSLEITAKIQKDNSNF HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEECCCCCH SQKYTNNLELEQLLKDVKSIGIKNSDRLSTLGLSTVRDLLYYYPRDHIDYARQVNIRNLE HHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC AGETVTIIGKIKRFNCFSSPKNKKLTILELTLTDSTGQIKISRFFAGPRFSNKGWQMMQK CCCEEEEEEEHHHHCCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCCCHHHHHHH KFYPVGATVAASGLVKETKYGKNLDNPEIEVLDSEGSEIESIKIGRLVPVYPLTEGVEAD HCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCEEECCCEEECCCCCCCCHHH VVRRAIFKILPKAENFSETLPEIFLNQYQLIDLKNAIKNIHFPIDRDCLAAARRRLVFDE HHHHHHHHHCCCCCCHHHHHHHHHHCCHHEEEHHHHHHHCCCCCCHHHHHHHHHHHHHHH FFYLQLGLLKRRQLQKKTEIGVALPVTGKLIKKFYKLLPFQLTNAQKRVVNEILRDLQKP HHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHCCC EPMKRLVQGDVGAGKTVVAVVAILAAVQVGYQAALMAPTEVLAEQHYDKLVTWFNLLHLP CHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH VELLTGSTKIAKRREIYSQLETGELPILVGTHALIQDTVNFHKLGLVVIDEQHRFGVHQR HHHHCCCHHHHHHHHHHHHHCCCCCCEEECCHHHHHHCCCHHHEEEEEEECCHHCCCHHH AKLQQKGESPHFLAMTATPIPRTLALTLHGDLDVSQIDELPPGRQPIQTTNLTGRQRKKA HHHHHCCCCCCEEEEECCCCCCEEEEEEECCCCHHHHHCCCCCCCCCEECCCCCHHHHHH YDLIRREIVQGRQVYVVLPLVEESEKLDVKSAIEEHQKLAEKIFPEFQIGLLHGRMSSAE HHHHHHHHHCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHCCCCCCH KDQVISTFRNNQTQILVSTTVVEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGVHH HHHHHHHHCCCCEEEEEEEEEEEECCCCCCCEEEEEECCHHCCHHHHHHHHHHHCCCCCC SYCLLMRGAGSTDATERLKVLEQSQDGFFIAEMDMRLRGPGQVLGTKQSGLPDFALASLV EEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEECEEECCCCCEECCCCCCCCHHHHHHHH EDQEVLELARGAALQVMEKDESLNSWPLLRKELEWRYQKMMGGSILN CHHHHHHHHCCCCEEEHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]