Click here to switch to the map view.

The map label for this gene is yhdJ [C]

Identifier: 113474753

GI number: 113474753

Start: 1498060

End: 1499565

Strand: Direct

Name: yhdJ [C]

Synonym: Tery_0950

Alternate gene names: 113474753

Gene position: 1498060-1499565 (Clockwise)

Preceding gene: 113474752

Following gene: 113474754

Centisome position: 19.33

GC content: 29.22

Gene sequence:

>1506_bases
ATGACAGATAAAAATAATCTGCCAAAACAACTAAGTTTATTTAATTTGAATTCAACAAATATAGAAGATTTAGCAACTCC
TAAAGGTTACAAGGGAATTGCAGCATTTCATAAATATTGGGGAAAAAAGCCAATAGAATGTCTTTCATTTTTGATTGAAT
CATTAACAACGGAAAATGATATTATTTTAGATCCTTTTTTAGGTTCTGGGTTAGTAGCAAGAGAGTCAATATCTAGAAAG
AGGCGATTTATTGGTATTGATATTAATCCTATATCAGTAGAACTAGCAAAGATGTTAATTGATTTACCATCTCATTTACA
TTTAAGAGAAATACTAAGTTCTTTTGAAGAAAATATTAAACCTAAAATAGAGGCAACTTATACTTTGGATGATGGCAATA
TTGCTAGTCACTATTTATGGGAAGAAGAAAAAATAAAATCTGTTTGGACTATTGCAAAAGGAGGCAGAAAGCGGGAAGAA
AGAATACCAACAGAGTATGATTATAATTTGATTGAGCAATTTCAAAATTATCAGCCAAAAATTCCTAGAGAAATTAATCT
TTTTCAAAATAGCAGAATTAATACAAAAGATAATTTTAAATTAACAGATTTATTGACTTGTAGAGCTTTGCATAATATAG
ACATTTTACTAGAAGCAATAAATCAACAAGATAATGAATTGAAGAAAGCTTTATTACTTTCATTAACTTCTGCTTCTGGG
CAAATGTCTAAGATGGTATTTGCTATTACAGGACGTGGAAAAAACAAAAATCAACCTACAAAAAAAATAGAAGTAGGTAG
TTGGGTAATAGGATATTGGCGACCTACACTTCACTTTGAAATTAATGTCTGGAATTGTTTTGAAAGACGTGTTAAAAAGC
TAATTAAAGCTATTGACGAAATTGATGATATAAACACATCTAATTTATCTGGTCAATTAATAGATGTTGTGAATTATAAG
GCTAATGTAGCTATTGTAGAAGGAGATAATAGAAAAGTATTATCTGAATGTCCTGATGAAATTATTTCATTAATTGTAGC
AGACCCTCCTCATAGCGATCGTATTCCCTATTTAGAGTTGAGTGAAATGTGGAATTCTCTGATTGGTAAAAAGCCAAATT
TTTCAGATGAAATAGTTATTTCAAATGCCGTAATTCGAGGTAAAGATCGAAAAACTTATATCAAAGAAATGGGAATTTTT
TTTGATAATACTGCCAGAATTTTAAAGCCAGGAGGTATTTTGGCTTTATTTTTTAATTCCAAAGATCGAGAAATTTGGAA
CTTTCTTAATCAAATAATTTTATCGTCAACAGAAATTAATTTTCGAGGCTATTTTCCTATGAAATATTCTTCTAATTCAG
TATTACAGAATAATAGAACTGGCAGTCTTAAACATGATTTTGTGCTAATTTATCAGAAGTCAGGAAAAAGATCTTCAGAG
TTTTTTCAATCACTGATAGTTATTCCTGGTTGGCGTTCAGAATTTCCTAATTATGCTGATAATTAA

Upstream 100 bases:

>100_bases
AATGAAGTTAGAAGTCAGAAATTGTTTTTGTAAAAGTAATTTTAATTTTGAGAACTATCCAAAAATATTTTTCTAAATAA
AATATACTATAAATAAAATA

Downstream 100 bases:

>100_bases
TAAAAAAGTAAAAAATTTTGAGGCTATTTTCCTATGAAATATTCTTATAATTCAGTAGTACAGAATCATAGAAATGGTAG
TTTTAAAAATAATTTTGTAC

Product: hypothetical protein

Products: S-Adenosyl-L-Homocysteine; DNA 6-Methylaminopurine. [C]

Alternate protein names: Adenine Specific DNA Methylase

Number of amino acids: Translated: 501; Mature: 500

Protein sequence:

>501_residues
MTDKNNLPKQLSLFNLNSTNIEDLATPKGYKGIAAFHKYWGKKPIECLSFLIESLTTENDIILDPFLGSGLVARESISRK
RRFIGIDINPISVELAKMLIDLPSHLHLREILSSFEENIKPKIEATYTLDDGNIASHYLWEEEKIKSVWTIAKGGRKREE
RIPTEYDYNLIEQFQNYQPKIPREINLFQNSRINTKDNFKLTDLLTCRALHNIDILLEAINQQDNELKKALLLSLTSASG
QMSKMVFAITGRGKNKNQPTKKIEVGSWVIGYWRPTLHFEINVWNCFERRVKKLIKAIDEIDDINTSNLSGQLIDVVNYK
ANVAIVEGDNRKVLSECPDEIISLIVADPPHSDRIPYLELSEMWNSLIGKKPNFSDEIVISNAVIRGKDRKTYIKEMGIF
FDNTARILKPGGILALFFNSKDREIWNFLNQIILSSTEINFRGYFPMKYSSNSVLQNNRTGSLKHDFVLIYQKSGKRSSE
FFQSLIVIPGWRSEFPNYADN

Sequences:

>Translated_501_residues
MTDKNNLPKQLSLFNLNSTNIEDLATPKGYKGIAAFHKYWGKKPIECLSFLIESLTTENDIILDPFLGSGLVARESISRK
RRFIGIDINPISVELAKMLIDLPSHLHLREILSSFEENIKPKIEATYTLDDGNIASHYLWEEEKIKSVWTIAKGGRKREE
RIPTEYDYNLIEQFQNYQPKIPREINLFQNSRINTKDNFKLTDLLTCRALHNIDILLEAINQQDNELKKALLLSLTSASG
QMSKMVFAITGRGKNKNQPTKKIEVGSWVIGYWRPTLHFEINVWNCFERRVKKLIKAIDEIDDINTSNLSGQLIDVVNYK
ANVAIVEGDNRKVLSECPDEIISLIVADPPHSDRIPYLELSEMWNSLIGKKPNFSDEIVISNAVIRGKDRKTYIKEMGIF
FDNTARILKPGGILALFFNSKDREIWNFLNQIILSSTEINFRGYFPMKYSSNSVLQNNRTGSLKHDFVLIYQKSGKRSSE
FFQSLIVIPGWRSEFPNYADN
>Mature_500_residues
TDKNNLPKQLSLFNLNSTNIEDLATPKGYKGIAAFHKYWGKKPIECLSFLIESLTTENDIILDPFLGSGLVARESISRKR
RFIGIDINPISVELAKMLIDLPSHLHLREILSSFEENIKPKIEATYTLDDGNIASHYLWEEEKIKSVWTIAKGGRKREER
IPTEYDYNLIEQFQNYQPKIPREINLFQNSRINTKDNFKLTDLLTCRALHNIDILLEAINQQDNELKKALLLSLTSASGQ
MSKMVFAITGRGKNKNQPTKKIEVGSWVIGYWRPTLHFEINVWNCFERRVKKLIKAIDEIDDINTSNLSGQLIDVVNYKA
NVAIVEGDNRKVLSECPDEIISLIVADPPHSDRIPYLELSEMWNSLIGKKPNFSDEIVISNAVIRGKDRKTYIKEMGIFF
DNTARILKPGGILALFFNSKDREIWNFLNQIILSSTEINFRGYFPMKYSSNSVLQNNRTGSLKHDFVLIYQKSGKRSSEF
FQSLIVIPGWRSEFPNYADN

Specific function: Unknown

COG id: COG1743

COG function: function code L; Adenine-specific DNA methylase containing a Zn-ribbon

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.1.1.72 [C]

Molecular weight: Translated: 57577; Mature: 57446

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDKNNLPKQLSLFNLNSTNIEDLATPKGYKGIAAFHKYWGKKPIECLSFLIESLTTEND
CCCCCCCCCEEEEEECCCCCHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
IILDPFLGSGLVARESISRKRRFIGIDINPISVELAKMLIDLPSHLHLREILSSFEENIK
EEECCCCCCCHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
PKIEATYTLDDGNIASHYLWEEEKIKSVWTIAKGGRKREERIPTEYDYNLIEQFQNYQPK
CCEEEEEEECCCCCCHHHCCCHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHCCCCC
IPREINLFQNSRINTKDNFKLTDLLTCRALHNIDILLEAINQQDNELKKALLLSLTSASG
CCCEEEHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
QMSKMVFAITGRGKNKNQPTKKIEVGSWVIGYWRPTLHFEINVWNCFERRVKKLIKAIDE
CCEEEEEEEECCCCCCCCCCCEEEECCEEEEEECEEEEEEEEHHHHHHHHHHHHHHHHHH
IDDINTSNLSGQLIDVVNYKANVAIVEGDNRKVLSECPDEIISLIVADPPHSDRIPYLEL
HHCCCCCCCCCEEEEEEECCEEEEEEECCCCHHHHHCCHHHHHEEECCCCCCCCCCEEEH
SEMWNSLIGKKPNFSDEIVISNAVIRGKDRKTYIKEMGIFFDNTARILKPGGILALFFNS
HHHHHHHHCCCCCCCCCEEEECEEEECCCHHHHHHHHCCEECCCHHEECCCCEEEEEECC
KDREIWNFLNQIILSSTEINFRGYFPMKYSSNSVLQNNRTGSLKHDFVLIYQKSGKRSSE
CCHHHHHHHHHHHHCCCEEEEEEEECEEECCCCCCCCCCCCCCCCCEEEEEECCCCCHHH
FFQSLIVIPGWRSEFPNYADN
HHHHHEECCCCHHHCCCCCCC
>Mature Secondary Structure 
TDKNNLPKQLSLFNLNSTNIEDLATPKGYKGIAAFHKYWGKKPIECLSFLIESLTTEND
CCCCCCCCEEEEEECCCCCHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
IILDPFLGSGLVARESISRKRRFIGIDINPISVELAKMLIDLPSHLHLREILSSFEENIK
EEECCCCCCCHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
PKIEATYTLDDGNIASHYLWEEEKIKSVWTIAKGGRKREERIPTEYDYNLIEQFQNYQPK
CCEEEEEEECCCCCCHHHCCCHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHCCCCC
IPREINLFQNSRINTKDNFKLTDLLTCRALHNIDILLEAINQQDNELKKALLLSLTSASG
CCCEEEHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
QMSKMVFAITGRGKNKNQPTKKIEVGSWVIGYWRPTLHFEINVWNCFERRVKKLIKAIDE
CCEEEEEEEECCCCCCCCCCCEEEECCEEEEEECEEEEEEEEHHHHHHHHHHHHHHHHHH
IDDINTSNLSGQLIDVVNYKANVAIVEGDNRKVLSECPDEIISLIVADPPHSDRIPYLEL
HHCCCCCCCCCEEEEEEECCEEEEEEECCCCHHHHHCCHHHHHEEECCCCCCCCCCEEEH
SEMWNSLIGKKPNFSDEIVISNAVIRGKDRKTYIKEMGIFFDNTARILKPGGILALFFNS
HHHHHHHHCCCCCCCCCEEEECEEEECCCHHHHHHHHCCEECCCHHEECCCCEEEEEECC
KDREIWNFLNQIILSSTEINFRGYFPMKYSSNSVLQNNRTGSLKHDFVLIYQKSGKRSSE
CCHHHHHHHHHHHHCCCEEEEEEEECEEECCCCCCCCCCCCCCCCCEEEEEECCCCCHHH
FFQSLIVIPGWRSEFPNYADN
HHHHHEECCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: S-Adenosyl-L-Methionine; DNA Adenine; DNA [C]

Specific reaction: S-Adenosyl-L-Methionine + DNA Adenine = S-Adenosyl-L-Homocysteine + DNA 6-Methylaminopurine. Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA