| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474715
Identifier: 113474715
GI number: 113474715
Start: 1422258
End: 1423010
Strand: Direct
Name: 113474715
Synonym: Tery_0902
Alternate gene names: NA
Gene position: 1422258-1423010 (Clockwise)
Preceding gene: 113474714
Following gene: 113474717
Centisome position: 18.35
GC content: 39.04
Gene sequence:
>753_bases ATGCCAAGAAAACCTCGGAATTTTCAAATTGGACACTCTTATCACATTACGACTCGTTGTAATAACCGTGAATTTAAACT ATCCAGGCGCGAATGTCGGGAAGTATTTCTTTATGCAATAAAAAAGGTTAGCACCAAATACAATTTTCGGCTTTATGCTT TGTGCATTATGTCCAATCATGTTCATTATTTGATTGAACCGTTGCAACCAGAAGATTTACCAAAAATTATGCACTACCTC AACTGGTACACAGCTATGTGTTTCAACAGAATGTTAAAACGTACGGGGCATTTTTGGGAAAAACGATATTACTGCAATGG GTTTCCTTCCTCAGATAGAGAAAGAGCATTGAATACTTTACGCTACATCCACGGTAATCCTAAAGCGGCCAAAATGCGTT GCGGCTTTTTCTATGATTTTAGTAACTATGGTAGCTACGAATGTTTGACTAATGATGGCCTGACTCAATGGCATCCGGCT TTCTTAGAGTTGGCCAATACTCTGGACCAATGTGCCCAGAAATATAAGGAATTTTGTAAGAAATATAAGTCCAAACAAAA AGATTCGAGAAAGTGCCACTGGGGCAGCAAACTTTTAGGGGGTATTGTGCTGTCTTTTGATGGCCGAAATTCTCGCTCTG CTAAGAAGAAAAAGTTATCAACTCCTTTTGACTTTCCGCCGACGGTGATGCCAGACAATGAAGAATTAGCAAAGGTAGTT AGTCAATTTGTTGTAGCTAATAGACCGAATTAG
Upstream 100 bases:
>100_bases CGCCTCCACCATTCGTCTCGTCCCACATTGACCGCTCCTTTGACGGCTCCTAGTTGTTCTTTTTTCTCTCTTACTTTTGA CTTTTGACTTGAAATGAATT
Downstream 100 bases:
>100_bases CAGAAAAAAAAAATGTAATACCTAGGTTTTAGCTTTAGTTCATAGTTCAGTTCTTTTAAACTATTTCCCCTAAGCAAGCA AAAGAACTTTTCATAGTTCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 250; Mature: 249
Protein sequence:
>250_residues MPRKPRNFQIGHSYHITTRCNNREFKLSRRECREVFLYAIKKVSTKYNFRLYALCIMSNHVHYLIEPLQPEDLPKIMHYL NWYTAMCFNRMLKRTGHFWEKRYYCNGFPSSDRERALNTLRYIHGNPKAAKMRCGFFYDFSNYGSYECLTNDGLTQWHPA FLELANTLDQCAQKYKEFCKKYKSKQKDSRKCHWGSKLLGGIVLSFDGRNSRSAKKKKLSTPFDFPPTVMPDNEELAKVV SQFVVANRPN
Sequences:
>Translated_250_residues MPRKPRNFQIGHSYHITTRCNNREFKLSRRECREVFLYAIKKVSTKYNFRLYALCIMSNHVHYLIEPLQPEDLPKIMHYL NWYTAMCFNRMLKRTGHFWEKRYYCNGFPSSDRERALNTLRYIHGNPKAAKMRCGFFYDFSNYGSYECLTNDGLTQWHPA FLELANTLDQCAQKYKEFCKKYKSKQKDSRKCHWGSKLLGGIVLSFDGRNSRSAKKKKLSTPFDFPPTVMPDNEELAKVV SQFVVANRPN >Mature_249_residues PRKPRNFQIGHSYHITTRCNNREFKLSRRECREVFLYAIKKVSTKYNFRLYALCIMSNHVHYLIEPLQPEDLPKIMHYLN WYTAMCFNRMLKRTGHFWEKRYYCNGFPSSDRERALNTLRYIHGNPKAAKMRCGFFYDFSNYGSYECLTNDGLTQWHPAF LELANTLDQCAQKYKEFCKKYKSKQKDSRKCHWGSKLLGGIVLSFDGRNSRSAKKKKLSTPFDFPPTVMPDNEELAKVVS QFVVANRPN
Specific function: Unknown
COG id: COG1943
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29637; Mature: 29506
Theoretical pI: Translated: 10.08; Mature: 10.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 6.8 %Cys+Met (Translated Protein) 4.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRKPRNFQIGHSYHITTRCNNREFKLSRRECREVFLYAIKKVSTKYNFRLYALCIMSNH CCCCCCCEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHCC VHYLIEPLQPEDLPKIMHYLNWYTAMCFNRMLKRTGHFWEKRYYCNGFPSSDRERALNTL HHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCEEECCCCCCHHHHHHHHH RYIHGNPKAAKMRCGFFYDFSNYGSYECLTNDGLTQWHPAFLELANTLDQCAQKYKEFCK HHHCCCCCCCEEEEEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH KYKSKQKDSRKCHWGSKLLGGIVLSFDGRNSRSAKKKKLSTPFDFPPTVMPDNEELAKVV HHHHCCCCCCCHHHHHHHHCCEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHH SQFVVANRPN HHHHHHCCCC >Mature Secondary Structure PRKPRNFQIGHSYHITTRCNNREFKLSRRECREVFLYAIKKVSTKYNFRLYALCIMSNH CCCCCCEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHCC VHYLIEPLQPEDLPKIMHYLNWYTAMCFNRMLKRTGHFWEKRYYCNGFPSSDRERALNTL HHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCEEECCCCCCHHHHHHHHH RYIHGNPKAAKMRCGFFYDFSNYGSYECLTNDGLTQWHPAFLELANTLDQCAQKYKEFCK HHHCCCCCCCEEEEEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH KYKSKQKDSRKCHWGSKLLGGIVLSFDGRNSRSAKKKKLSTPFDFPPTVMPDNEELAKVV HHHHCCCCCCCHHHHHHHHCCEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHH SQFVVANRPN HHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA