Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113474705

Identifier: 113474705

GI number: 113474705

Start: 1412737

End: 1413084

Strand: Direct

Name: 113474705

Synonym: Tery_0892

Alternate gene names: NA

Gene position: 1412737-1413084 (Clockwise)

Preceding gene: 113474704

Following gene: 113474706

Centisome position: 18.23

GC content: 36.78

Gene sequence:

>348_bases
TTGATACAAACAATTGATAATAAAGAATTATTGCTTTGGTTATTAAGGTTGCGCCAACGGTTTTGTGTCACAGGATTTTC
TATGTTTCCTATACTTAAACCTGGAGATGAGGTTCTTGTAGATACAAAAGCCTACCACCACTGTGCTCCAGAAATAGGGG
ATATGGTTGTGGCTGAACACCCTCATCGTCAAGAGTTAAAAATAATTAAGTGGGTTGCTTTTGTTGATGAAAAAGGTGAC
TGTTTTTTGGTCGGAGAAAATAAGGAAGAAAGTACCGATAGTCGTTCTTTTGGTTTGGTAAATCGAAAACGAATAATTGG
TAAGGTAAAGAGCAAGTTTCCAACATAG

Upstream 100 bases:

>100_bases
TGTGGAGAAAATTCACAATATGTTCTGGGCTACTAAGGAGCGGGATGTGACTTGGTACAAGGCTAGCTAATTTTTTTTGT
TTGAGGTGGTAGGTACAAGG

Downstream 100 bases:

>100_bases
TTTAACACATTAGGTTTGAAGGATATTGGTTGAATAAAAAATCATGTTTGCATTTAAATAACTCTTACTAATTTCAGTAT
ATCAATTTTTTTTTAATTGG

Product: hypothetical protein

Products: NA

Alternate protein names: Peptidase

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MIQTIDNKELLLWLLRLRQRFCVTGFSMFPILKPGDEVLVDTKAYHHCAPEIGDMVVAEHPHRQELKIIKWVAFVDEKGD
CFLVGENKEESTDSRSFGLVNRKRIIGKVKSKFPT

Sequences:

>Translated_115_residues
MIQTIDNKELLLWLLRLRQRFCVTGFSMFPILKPGDEVLVDTKAYHHCAPEIGDMVVAEHPHRQELKIIKWVAFVDEKGD
CFLVGENKEESTDSRSFGLVNRKRIIGKVKSKFPT
>Mature_115_residues
MIQTIDNKELLLWLLRLRQRFCVTGFSMFPILKPGDEVLVDTKAYHHCAPEIGDMVVAEHPHRQELKIIKWVAFVDEKGD
CFLVGENKEESTDSRSFGLVNRKRIIGKVKSKFPT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13285; Mature: 13285

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQTIDNKELLLWLLRLRQRFCVTGFSMFPILKPGDEVLVDTKAYHHCAPEIGDMVVAEH
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCEEEECCHHHHCCCCCCCEEECCC
PHRQELKIIKWVAFVDEKGDCFLVGENKEESTDSRSFGLVNRKRIIGKVKSKFPT
CCCHHHHHHHHEEEECCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIQTIDNKELLLWLLRLRQRFCVTGFSMFPILKPGDEVLVDTKAYHHCAPEIGDMVVAEH
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCEEEECCHHHHCCCCCCCEEECCC
PHRQELKIIKWVAFVDEKGDCFLVGENKEESTDSRSFGLVNRKRIIGKVKSKFPT
CCCHHHHHHHHEEEECCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA