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The map label for this gene is hypD [H]

Identifier: 113474625

GI number: 113474625

Start: 1261720

End: 1262853

Strand: Direct

Name: hypD [H]

Synonym: Tery_0795

Alternate gene names: 113474625

Gene position: 1261720-1262853 (Clockwise)

Preceding gene: 113474624

Following gene: 113474626

Centisome position: 16.28

GC content: 39.68

Gene sequence:

>1134_bases
ATGAAGTACGTTAAAGAATTTCGCGACCCCGACAAAGCACAAGGTTTAGTAAGAGAAATTGCTCAACTCAGCCAAAAGTT
AGGATACACCACGGAACACCCACTAAAAATAATGGAAGTTTGTGGGGGTCACACTCACTCTATTTTTAAATATGGCATTC
AAGAAGCTTTACCTAATAATATTGAACTAATACATGGCCCTGGCTGTCCAGTTTGCATTATGCCCAGAGGTAGATTAGAT
GATGCGATCGCTCTGGCAGAAAAACCCAATGTCATTTTTACAACTTTCGGTGATGGGATGCGAGTACCGGGTTCTCAAAA
AAGTTTGTTACAGGCAAAAGCTCAGGGTGCAGATATTAGAATGGTTTATTCGCCCCTGGATAGTTTGAAGATAGCTAAAG
AAAACCCAGATAAAGAGATAATTTTCTTTGGTTTAGGTTTTGAAACTACTGCCCCCAGTGCAGCTTTAACTATTTTGCAG
GCAGAAGCAGAAGGCGTCAAAAATTTCAGTATATTTAGTAACCATGTTTTGGTTGTACCGGCTCTAGAGGCATTACTTAG
CAACCCAGATTTAGAATTACAAGGTTTTGTTGGGCCTGGTCATGTGAGTATGGTTATTGGTACTCAAGTATATCACATAA
TTTCGGAAAAATACCAAAAACCTGTGGTTGTATCAGGTTTTGAACCTTTGGATATTTTGCAGTCTATTTGGATGTTACTA
CAGCAAATATTAGAAGGTCGTTGTGAAGTTGAAAATCAATATAGTCGCATAGTAAAAGAAGAGGGTAATAGGGTAGCACT
TGAAGCCATGAAACGAGTATTTGAAGTGCGAGATACGTTTGAGTGGCGTGGTTTGGGAGAAATTCCCGAGTCCGGATTAA
AAATTACTGATGCTTATTCCTGTTTTGATGCTGAGGCTAAGTTTTGTCTGCCTAACAAAAAAGTTGCTGATGCTAAAGCT
TGCCAATGTGGGGAAATTCTCAAAGGTGTACTGAAACCTTGGGAGTGTAAAGTCTTTGGTACTGCTTGTACTCCTGAAAA
CCCGATCGGCACTTGCATGGTTTCCTCTGAAGGTGCTTGTGCTGCCTATTATAAATATGGTCGGTTGTTTAAGAAGGAAA
AAGTTAAGGTTTAA

Upstream 100 bases:

>100_bases
ATTTGTCAAAAATCCAATAATTATTAGATTTTATAAGATTGTTGGAGATTTTTGGGAACGTAAACCTAACATATTATTAC
ATTTATTTCTGATAACTGAT

Downstream 100 bases:

>100_bases
TGCCAGTGGCTTAGGTTAGGGTTTATAATTGATTCCATAGTGGGACCAATGAACATAAGCCCTTTGTAGGAAATCTCACA
AAAAAATCATTTCGTGACAA

Product: hydrogenase expression/formation protein HypD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MKYVKEFRDPDKAQGLVREIAQLSQKLGYTTEHPLKIMEVCGGHTHSIFKYGIQEALPNNIELIHGPGCPVCIMPRGRLD
DAIALAEKPNVIFTTFGDGMRVPGSQKSLLQAKAQGADIRMVYSPLDSLKIAKENPDKEIIFFGLGFETTAPSAALTILQ
AEAEGVKNFSIFSNHVLVVPALEALLSNPDLELQGFVGPGHVSMVIGTQVYHIISEKYQKPVVVSGFEPLDILQSIWMLL
QQILEGRCEVENQYSRIVKEEGNRVALEAMKRVFEVRDTFEWRGLGEIPESGLKITDAYSCFDAEAKFCLPNKKVADAKA
CQCGEILKGVLKPWECKVFGTACTPENPIGTCMVSSEGACAAYYKYGRLFKKEKVKV

Sequences:

>Translated_377_residues
MKYVKEFRDPDKAQGLVREIAQLSQKLGYTTEHPLKIMEVCGGHTHSIFKYGIQEALPNNIELIHGPGCPVCIMPRGRLD
DAIALAEKPNVIFTTFGDGMRVPGSQKSLLQAKAQGADIRMVYSPLDSLKIAKENPDKEIIFFGLGFETTAPSAALTILQ
AEAEGVKNFSIFSNHVLVVPALEALLSNPDLELQGFVGPGHVSMVIGTQVYHIISEKYQKPVVVSGFEPLDILQSIWMLL
QQILEGRCEVENQYSRIVKEEGNRVALEAMKRVFEVRDTFEWRGLGEIPESGLKITDAYSCFDAEAKFCLPNKKVADAKA
CQCGEILKGVLKPWECKVFGTACTPENPIGTCMVSSEGACAAYYKYGRLFKKEKVKV
>Mature_377_residues
MKYVKEFRDPDKAQGLVREIAQLSQKLGYTTEHPLKIMEVCGGHTHSIFKYGIQEALPNNIELIHGPGCPVCIMPRGRLD
DAIALAEKPNVIFTTFGDGMRVPGSQKSLLQAKAQGADIRMVYSPLDSLKIAKENPDKEIIFFGLGFETTAPSAALTILQ
AEAEGVKNFSIFSNHVLVVPALEALLSNPDLELQGFVGPGHVSMVIGTQVYHIISEKYQKPVVVSGFEPLDILQSIWMLL
QQILEGRCEVENQYSRIVKEEGNRVALEAMKRVFEVRDTFEWRGLGEIPESGLKITDAYSCFDAEAKFCLPNKKVADAKA
CQCGEILKGVLKPWECKVFGTACTPENPIGTCMVSSEGACAAYYKYGRLFKKEKVKV

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=366, Percent_Identity=52.4590163934426, Blast_Score=431, Evalue=1e-122,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 41667; Mature: 41667

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYVKEFRDPDKAQGLVREIAQLSQKLGYTTEHPLKIMEVCGGHTHSIFKYGIQEALPNN
CCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCC
IELIHGPGCPVCIMPRGRLDDAIALAEKPNVIFTTFGDGMRVPGSQKSLLQAKAQGADIR
CEEEECCCCCEEECCCCCCCHHHHHCCCCCEEEEECCCCEECCCCHHHHHHHHHCCCCEE
MVYSPLDSLKIAKENPDKEIIFFGLGFETTAPSAALTILQAEAEGVKNFSIFSNHVLVVP
EEECCCCHHEECCCCCCCEEEEEECCCCCCCCHHHEEEEEHHHCCCCCEEECCCCEEEHH
ALEALLSNPDLELQGFVGPGHVSMVIGTQVYHIISEKYQKPVVVSGFEPLDILQSIWMLL
HHHHHHCCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHH
QQILEGRCEVENQYSRIVKEEGNRVALEAMKRVFEVRDTFEWRGLGEIPESGLKITDAYS
HHHHCCCCCHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECHH
CFDAEAKFCLPNKKVADAKACQCGEILKGVLKPWECKVFGTACTPENPIGTCMVSSEGAC
HHCCCCCEECCCCCCCCHHHCHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEECCCCCH
AAYYKYGRLFKKEKVKV
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKYVKEFRDPDKAQGLVREIAQLSQKLGYTTEHPLKIMEVCGGHTHSIFKYGIQEALPNN
CCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCC
IELIHGPGCPVCIMPRGRLDDAIALAEKPNVIFTTFGDGMRVPGSQKSLLQAKAQGADIR
CEEEECCCCCEEECCCCCCCHHHHHCCCCCEEEEECCCCEECCCCHHHHHHHHHCCCCEE
MVYSPLDSLKIAKENPDKEIIFFGLGFETTAPSAALTILQAEAEGVKNFSIFSNHVLVVP
EEECCCCHHEECCCCCCCEEEEEECCCCCCCCHHHEEEEEHHHCCCCCEEECCCCEEEHH
ALEALLSNPDLELQGFVGPGHVSMVIGTQVYHIISEKYQKPVVVSGFEPLDILQSIWMLL
HHHHHHCCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHH
QQILEGRCEVENQYSRIVKEEGNRVALEAMKRVFEVRDTFEWRGLGEIPESGLKITDAYS
HHHHCCCCCHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECHH
CFDAEAKFCLPNKKVADAKACQCGEILKGVLKPWECKVFGTACTPENPIGTCMVSSEGAC
HHCCCCCEECCCCCCCCHHHCHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEECCCCCH
AAYYKYGRLFKKEKVKV
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8497190 [H]