| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474577
Identifier: 113474577
GI number: 113474577
Start: 1184631
End: 1185065
Strand: Direct
Name: 113474577
Synonym: Tery_0734
Alternate gene names: NA
Gene position: 1184631-1185065 (Clockwise)
Preceding gene: 113474575
Following gene: 113474579
Centisome position: 15.29
GC content: 31.72
Gene sequence:
>435_bases ATGACCTTTATTAAGGCTACACCAATTTTAGCTGATGAGTATGACAAACAAATATTAGTAGGTCAAGATTTTTCTGGTAA AGACTTAACTAATGATTCATTTACTAAGTCAATTCTGCGTAAAAGTAACTTTAGTAATGCAAATTTGAGTGGAGTTAGTT TATTTGGCGCTCATTTAGAAGGAGCTAATTTAGAGGGAGCAAATCTTAGTTATTCTACTTTGGATGATGCTGTTTTTAAC AAAGCAAATTTGACTAATGCTATTTTGGAAGGTGCTTTTGCTTTCCATACTCAATTTCGTGACGCAATTATTGATGGAGC AGATTTTACTGATGCTTTTTTGCGAAAAGATACTACAAAAGATCTATGCAAAATTGCTCAAGGTAAAAATTCTATTACAG GTAAGGAAACAAGAGATACACTCTTTTGTAAATAA
Upstream 100 bases:
>100_bases AAGTAGCATGAATTTTAGACAACAGAAAACTTCCCAAGTTTTAGTCAGCTTTGTCTTTTCATTAGTAGTTTATATGGTTG CTATGGGGACAATAACTGCT
Downstream 100 bases:
>100_bases TTTTTATTACCCTAACTCGCAGGAATTAAGGAACACAGAATTAGGACAAATAAACTTTAGATAAACTTTATTGAAATTTT CCCTTGTCTACCAACGCCCA
Product: pentapeptide repeat-containing protein
Products: NA
Alternate protein names: Pentapeptide Repeat Protein; RfrA Pentapeptide Repeat-Containing Protein; Secreted Pentapeptide Repeats Protein; Pentapeptide Repeat Family Protein
Number of amino acids: Translated: 144; Mature: 143
Protein sequence:
>144_residues MTFIKATPILADEYDKQILVGQDFSGKDLTNDSFTKSILRKSNFSNANLSGVSLFGAHLEGANLEGANLSYSTLDDAVFN KANLTNAILEGAFAFHTQFRDAIIDGADFTDAFLRKDTTKDLCKIAQGKNSITGKETRDTLFCK
Sequences:
>Translated_144_residues MTFIKATPILADEYDKQILVGQDFSGKDLTNDSFTKSILRKSNFSNANLSGVSLFGAHLEGANLEGANLSYSTLDDAVFN KANLTNAILEGAFAFHTQFRDAIIDGADFTDAFLRKDTTKDLCKIAQGKNSITGKETRDTLFCK >Mature_143_residues TFIKATPILADEYDKQILVGQDFSGKDLTNDSFTKSILRKSNFSNANLSGVSLFGAHLEGANLEGANLSYSTLDDAVFNK ANLTNAILEGAFAFHTQFRDAIIDGADFTDAFLRKDTTKDLCKIAQGKNSITGKETRDTLFCK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15728; Mature: 15597
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFIKATPILADEYDKQILVGQDFSGKDLTNDSFTKSILRKSNFSNANLSGVSLFGAHLE CCEECCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCC GANLEGANLSYSTLDDAVFNKANLTNAILEGAFAFHTQFRDAIIDGADFTDAFLRKDTTK CCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHH DLCKIAQGKNSITGKETRDTLFCK HHHHHHCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TFIKATPILADEYDKQILVGQDFSGKDLTNDSFTKSILRKSNFSNANLSGVSLFGAHLE CEECCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCC GANLEGANLSYSTLDDAVFNKANLTNAILEGAFAFHTQFRDAIIDGADFTDAFLRKDTTK CCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHH DLCKIAQGKNSITGKETRDTLFCK HHHHHHCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA