| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474521
Identifier: 113474521
GI number: 113474521
Start: 1102446
End: 1102814
Strand: Direct
Name: 113474521
Synonym: Tery_0672
Alternate gene names: NA
Gene position: 1102446-1102814 (Clockwise)
Preceding gene: 113474518
Following gene: 113474522
Centisome position: 14.22
GC content: 34.96
Gene sequence:
>369_bases ATGGCACAAATTCTTGATCCCCTACCATCTAAAAGCTCCAATCCAATTATCTGTTGTTACATAAATGCCACAAGTCAAAT CCAGATAGCTAAAATTAGTAATATACCTAATTGGTATTTTGAAAGAGTTGTATTTCCAGGTCAACGTTTAGTATTTGAAT CAGTTATTGGTGCTTTAATGGAGGTTCACACAGGAGCATTGGCCAGCTCTATCTTGTCAGATACAATACCTTGCGATCGC CTACAAATAAATGAAAGTCCTTATTCTTCAATTTGTGAAACTAAGAATTCTGTAGCAAGATCAGTCAATTTATCTCCAAG ACTAACCTCTCCTTCAAAATCAAGACAAGTTTTGAGTAGAGTAGATTAA
Upstream 100 bases:
>100_bases AACTTAAGTATTCAAAATTACAACTCATAGAGTTCAGTTAATGTTAAGCTATCTGAATAATTAAATAACTGTATAAACAA AAAACTTTTGATAGATTAAT
Downstream 100 bases:
>100_bases TTACCTTAAGCTCCCAAGAGTTAAATTAAAAACTATGAGGATAAATCAACTTAATTATAGTCTAAATATAAGCTTAAAAA AGTTGATTTACTAGATAATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 122; Mature: 121
Protein sequence:
>122_residues MAQILDPLPSKSSNPIICCYINATSQIQIAKISNIPNWYFERVVFPGQRLVFESVIGALMEVHTGALASSILSDTIPCDR LQINESPYSSICETKNSVARSVNLSPRLTSPSKSRQVLSRVD
Sequences:
>Translated_122_residues MAQILDPLPSKSSNPIICCYINATSQIQIAKISNIPNWYFERVVFPGQRLVFESVIGALMEVHTGALASSILSDTIPCDR LQINESPYSSICETKNSVARSVNLSPRLTSPSKSRQVLSRVD >Mature_121_residues AQILDPLPSKSSNPIICCYINATSQIQIAKISNIPNWYFERVVFPGQRLVFESVIGALMEVHTGALASSILSDTIPCDRL QINESPYSSICETKNSVARSVNLSPRLTSPSKSRQVLSRVD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014964 [H]
Pfam domain/function: PF08865 DUF1830 [H]
EC number: NA
Molecular weight: Translated: 13425; Mature: 13293
Theoretical pI: Translated: 8.33; Mature: 8.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQILDPLPSKSSNPIICCYINATSQIQIAKISNIPNWYFERVVFPGQRLVFESVIGALM CCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHH EVHTGALASSILSDTIPCDRLQINESPYSSICETKNSVARSVNLSPRLTSPSKSRQVLSR HHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH VD CC >Mature Secondary Structure AQILDPLPSKSSNPIICCYINATSQIQIAKISNIPNWYFERVVFPGQRLVFESVIGALM CCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHH EVHTGALASSILSDTIPCDRLQINESPYSSICETKNSVARSVNLSPRLTSPSKSRQVLSR HHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH VD CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]