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The map label for this gene is ycdJ [C]

Identifier: 113474460

GI number: 113474460

Start: 976490

End: 977383

Strand: Direct

Name: ycdJ [C]

Synonym: Tery_0604

Alternate gene names: 113474460

Gene position: 976490-977383 (Clockwise)

Preceding gene: 113474459

Following gene: 113474461

Centisome position: 12.6

GC content: 31.43

Gene sequence:

>894_bases
GTGAAAATAGGAGAAAAAACATCTTATATAAATATCAACGGTGTTGAACATTACTATGAGTGGATCAAGACATCAAACTC
TAGAGAAAAATCAAAACCAGTAATGGTATTTTTGCACGGATGGGGAGGTTCTGGTAGATATTGGGAAAGCACAGCGAAAG
AACTTTCCCATAAATTTGATTGTCTAATTTACGACTTAAGAGGATTTGGTCGTACTTCTTTACCTAAAGATAAATCTACA
GGAGAAAAAAGGATTTCTTCAACTACAAAAAATCTTATTAATGACTATGACTTAGTAACTTATGCCGAAGATTTAAAAGT
TTTGTTAAATGCTTTAAATTTAGATCAAGTTTATATTACTGCTCATTCAACTGGAGCATCTATTGCTATTATATTTTTGA
ATATGTATCCAGAGAGATTAGAAAAAGCAATTTTCACCTGTAGTGGTGTTTTTGAATATGACGAAAAAAGCTTTTCTGCC
TTTCATAAATTTAGCCGTTATGTAGTGATGTTTCGCCCTAAATGGTTAGTTAAAATTCCTTTTATGGGTCGTATTTTTAT
GGCAAGATTTTTCCATAAACCTCTGCCTAATAGTATGTGTAATATTTTTTTAGAAGATTTTCTCTTAGCAGATTTTGATG
CTGCCTATGGCACAGTTTTAACTTCCGTAAGTAAAAAAGCAGCAGAATGGCTACCAGAAGAATTTAAAAAATTAACAGTA
CCAGTTCTATTAATTTGTGGTGAATATGATCAGATAATTCCCTTAGAGATGGGTAGGCAAGCAGCAAAACTAAATGAAAA
TATAGAATTTATTGTGATGGAAAATACAGCTCATTTTCCTATGCTAGAAGATCGAGAAAAATATCTACAAAAAGTCCTAA
ATTTTGTAGCATAA

Upstream 100 bases:

>100_bases
AGTATTAGGCGTAATTATTTTAATCAGAGTAATAGCAATTCACTTTGTTATATAATCTATAAATTAAAAAAAAATCATCA
AAAATCAGGAGCTAGTTAGA

Downstream 100 bases:

>100_bases
ATTAAAATTTAAGAGTCAAACTGAGTCAGGCAAAGGATATAACCTAGAAGACATAAAGGAACAAATATCAAGCCTCATTA
ATGAGCTAGAATCAAATGCT

Product: alpha/beta hydrolase fold protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MKIGEKTSYININGVEHYYEWIKTSNSREKSKPVMVFLHGWGGSGRYWESTAKELSHKFDCLIYDLRGFGRTSLPKDKST
GEKRISSTTKNLINDYDLVTYAEDLKVLLNALNLDQVYITAHSTGASIAIIFLNMYPERLEKAIFTCSGVFEYDEKSFSA
FHKFSRYVVMFRPKWLVKIPFMGRIFMARFFHKPLPNSMCNIFLEDFLLADFDAAYGTVLTSVSKKAAEWLPEEFKKLTV
PVLLICGEYDQIIPLEMGRQAAKLNENIEFIVMENTAHFPMLEDREKYLQKVLNFVA

Sequences:

>Translated_297_residues
MKIGEKTSYININGVEHYYEWIKTSNSREKSKPVMVFLHGWGGSGRYWESTAKELSHKFDCLIYDLRGFGRTSLPKDKST
GEKRISSTTKNLINDYDLVTYAEDLKVLLNALNLDQVYITAHSTGASIAIIFLNMYPERLEKAIFTCSGVFEYDEKSFSA
FHKFSRYVVMFRPKWLVKIPFMGRIFMARFFHKPLPNSMCNIFLEDFLLADFDAAYGTVLTSVSKKAAEWLPEEFKKLTV
PVLLICGEYDQIIPLEMGRQAAKLNENIEFIVMENTAHFPMLEDREKYLQKVLNFVA
>Mature_297_residues
MKIGEKTSYININGVEHYYEWIKTSNSREKSKPVMVFLHGWGGSGRYWESTAKELSHKFDCLIYDLRGFGRTSLPKDKST
GEKRISSTTKNLINDYDLVTYAEDLKVLLNALNLDQVYITAHSTGASIAIIFLNMYPERLEKAIFTCSGVFEYDEKSFSA
FHKFSRYVVMFRPKWLVKIPFMGRIFMARFFHKPLPNSMCNIFLEDFLLADFDAAYGTVLTSVSKKAAEWLPEEFKKLTV
PVLLICGEYDQIIPLEMGRQAAKLNENIEFIVMENTAHFPMLEDREKYLQKVLNFVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dmpD/todF/xylF esterase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR000639 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: NA

Molecular weight: Translated: 34355; Mature: 34355

Theoretical pI: Translated: 7.97; Mature: 7.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIGEKTSYININGVEHYYEWIKTSNSREKSKPVMVFLHGWGGSGRYWESTAKELSHKFD
CCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
CLIYDLRGFGRTSLPKDKSTGEKRISSTTKNLINDYDLVTYAEDLKVLLNALNLDQVYIT
EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEE
AHSTGASIAIIFLNMYPERLEKAIFTCSGVFEYDEKSFSAFHKFSRYVVMFRPKWLVKIP
EECCCCEEEEEEEHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCEEEEECCCEEEECC
FMGRIFMARFFHKPLPNSMCNIFLEDFLLADFDAAYGTVLTSVSKKAAEWLPEEFKKLTV
CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PVLLICGEYDQIIPLEMGRQAAKLNENIEFIVMENTAHFPMLEDREKYLQKVLNFVA
CEEEEECCCCCEECHHHCCHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MKIGEKTSYININGVEHYYEWIKTSNSREKSKPVMVFLHGWGGSGRYWESTAKELSHKFD
CCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
CLIYDLRGFGRTSLPKDKSTGEKRISSTTKNLINDYDLVTYAEDLKVLLNALNLDQVYIT
EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEE
AHSTGASIAIIFLNMYPERLEKAIFTCSGVFEYDEKSFSAFHKFSRYVVMFRPKWLVKIP
EECCCCEEEEEEEHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCEEEEECCCEEEECC
FMGRIFMARFFHKPLPNSMCNIFLEDFLLADFDAAYGTVLTSVSKKAAEWLPEEFKKLTV
CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PVLLICGEYDQIIPLEMGRQAAKLNENIEFIVMENTAHFPMLEDREKYLQKVLNFVA
CEEEEECCCCCEECHHHCCHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]