| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113474459
Identifier: 113474459
GI number: 113474459
Start: 975384
End: 975956
Strand: Direct
Name: 113474459
Synonym: Tery_0603
Alternate gene names: NA
Gene position: 975384-975956 (Clockwise)
Preceding gene: 113474457
Following gene: 113474460
Centisome position: 12.59
GC content: 39.62
Gene sequence:
>573_bases ATGACCATAGTAATTTGCCCAGGAATACATGAGCCAAAGCTAACCGATCAATTCTTGGAAGGTTTATCTATTAATTGGCA GAACCTCTCTCATTCTGGAAAGCTCTTAGTATGCCCAACTCAAGACTATACCCCCTACTCTACCATTGACATATCAAAAT TTTTATGGAGCTCAAAATTGATAAGGACAAATACACCATTACTATTCATTGCCTTTAGTGCAGGAGTAGTAGGAGCAACA GGAGCCGCTTGGACTTGGCAACTAGGAGGGGGACAAGTAAAAGCTGTTATAGCTATTGATGGATGGGGAATGCCTGTCAA GGGAAATTTTCCCATCTATAAAGTCAGTCACGACCATTTCACCCATTGGAGTTGGGGAATTTTCAGTAGTGGGGACGAAA ACTTTTATGCCTATCCATCTGTAGAACATTTAGAAATATGGCGATCGCCCCAAACAACTAGAGGTTGGTGGCTACATCAA AACATTATGGAAGTCAAAACAGCAACACCTGCAACAGCCAAAGAATTTATCATAAAAATATTAGAAAACCATGAAGAATT AAGCAGTATTTAA
Upstream 100 bases:
>100_bases AATGGGAAATAATTTCCTGAAATTAATACTGTGTCAGTCTACTAGAATAATTAAAATCGAACAAAAATAGTATTTTCAAT TTTAATTTTTCAATTTTGAT
Downstream 100 bases:
>100_bases AGTAATAAACTTAGGGTTTTGCAAAAGTTATTTTGATAGAGATAATTTTCAACAACCCTGCCCAAAAAATTCAGAATATA CTAATTCCCATATATTAATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 190; Mature: 189
Protein sequence:
>190_residues MTIVICPGIHEPKLTDQFLEGLSINWQNLSHSGKLLVCPTQDYTPYSTIDISKFLWSSKLIRTNTPLLFIAFSAGVVGAT GAAWTWQLGGGQVKAVIAIDGWGMPVKGNFPIYKVSHDHFTHWSWGIFSSGDENFYAYPSVEHLEIWRSPQTTRGWWLHQ NIMEVKTATPATAKEFIIKILENHEELSSI
Sequences:
>Translated_190_residues MTIVICPGIHEPKLTDQFLEGLSINWQNLSHSGKLLVCPTQDYTPYSTIDISKFLWSSKLIRTNTPLLFIAFSAGVVGAT GAAWTWQLGGGQVKAVIAIDGWGMPVKGNFPIYKVSHDHFTHWSWGIFSSGDENFYAYPSVEHLEIWRSPQTTRGWWLHQ NIMEVKTATPATAKEFIIKILENHEELSSI >Mature_189_residues TIVICPGIHEPKLTDQFLEGLSINWQNLSHSGKLLVCPTQDYTPYSTIDISKFLWSSKLIRTNTPLLFIAFSAGVVGATG AAWTWQLGGGQVKAVIAIDGWGMPVKGNFPIYKVSHDHFTHWSWGIFSSGDENFYAYPSVEHLEIWRSPQTTRGWWLHQN IMEVKTATPATAKEFIIKILENHEELSSI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21390; Mature: 21258
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIVICPGIHEPKLTDQFLEGLSINWQNLSHSGKLLVCPTQDYTPYSTIDISKFLWSSKL CEEEECCCCCCCCHHHHHHCCCCCEEECCCCCCCEEEEECCCCCCCCEEHHHHHHHCCCE IRTNTPLLFIAFSAGVVGATGAAWTWQLGGGQVKAVIAIDGWGMPVKGNFPIYKVSHDHF EECCCCEEEEEEECCCEECCCCEEEEEECCCEEEEEEEECCCCCCEECCCCEEEECCCCC THWSWGIFSSGDENFYAYPSVEHLEIWRSPQTTRGWWLHQNIMEVKTATPATAKEFIIKI CEEECCEECCCCCCEEECCCCEEEEEECCCCCCCCEEEECCCEEEECCCCCHHHHHHHHH LENHEELSSI HHCHHHHHCC >Mature Secondary Structure TIVICPGIHEPKLTDQFLEGLSINWQNLSHSGKLLVCPTQDYTPYSTIDISKFLWSSKL EEEECCCCCCCCHHHHHHCCCCCEEECCCCCCCEEEEECCCCCCCCEEHHHHHHHCCCE IRTNTPLLFIAFSAGVVGATGAAWTWQLGGGQVKAVIAIDGWGMPVKGNFPIYKVSHDHF EECCCCEEEEEEECCCEECCCCEEEEEECCCEEEEEEEECCCCCCEECCCCEEEECCCCC THWSWGIFSSGDENFYAYPSVEHLEIWRSPQTTRGWWLHQNIMEVKTATPATAKEFIIKI CEEECCEECCCCCCEEECCCCEEEEEECCCCCCCCEEEECCCEEEECCCCCHHHHHHHHH LENHEELSSI HHCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA