| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is tkt [H]
Identifier: 113474321
GI number: 113474321
Start: 711457
End: 713475
Strand: Reverse
Name: tkt [H]
Synonym: Tery_0450
Alternate gene names: 113474321
Gene position: 713475-711457 (Counterclockwise)
Preceding gene: 113474322
Following gene: 113474320
Centisome position: 9.21
GC content: 42.15
Gene sequence:
>2019_bases ATGGCTGTTGCAACTCAATCACTTGAAGAACTTTGCATTAACTCTATTCGCTTTTTAGCAATTGATGCAGTCCAAAAAGC TAATTCTGGCCATCCAGGACTACCAATGGGTGCGGCACCAATGGCCTTTGTCCTTTGGGATAAGTTGATGCGGTTTAACC CCAAAAATCCTAAATGGTTAAATCGCGATCGCTTTGTTCTCTCTGCTGGCCACGGCTGTATGTTACAGTATGCTTTGATG CACTTGACTGGTTATGACAGTGTACCTATAGAGGAAATTAAACAATTCCGTCAGTGGAATTCTAAAACTCCTGGCCATCC AGAAAATCATATTACTGAAGGTATTGAAGTTACTACTGGGCCACTAGGACAAGGTATTGCTAATGCTGTAGGATTAGCTG CAGCTGAAGCTCATTTAGCTGCTGTATTTAATAAGCCAGATTGTAATCTCATTGACCATTATACTTATGTAATTGTGGGT GATGGTTGTAATATGGAGGGGATTTCTGGTGAAGCTTGCTCCCTTGCCGGACACTGGGGTTTAGGTAAGTTAATTGCTTT CTATGATGATAACCATATCTCTATTGATGGTCACACTGATATTTCTTTTACTGAAGATGTAGGTAAACGTTTTGAAGCTT ATGGTTGGCACGTTCAGCACGTTAGCGATGGTAATACTAATTTAGAAGCGATCGCTGAAGCTATTGAAAAAGCAAAAGCA GTTACTGACAAACCTTCCCTAATTAAAGTTACTACTATTATTGGTTACGGTTCTCCTAATAAAGCTGATACTCACGATGT ACATGGTGCGGCACTAGGTCCTGATGAGGTGGCAGCAACTCGGAAACATCTTGGTTGGGAATATCCAGAGTTTGAGGTTC CACCAGATGCTCTCAGTCACTTCCGCAAAGCAGTTGAGCGAGGAGCTAAATATGAGGAAGAATGGAATCAATTATTCTCT GAGTATAAGTCTAAGTATCCTGAAGATGCAGCTACTTTAGAACGGATGGTAAGTGGTAAACTACCTGAAGGTTGGGCGGA TGCACTACCTAAATATACTCCTGAAAGTAAGAAAGATGCTACTCGTAACCAGTCTGGTGCAACACTCAACGCAATAGCTG GAGTTTTACCAGAATTAATTGGTGGTTCTGCTGACTTGGCTCCTTCTAACAAAACTTTACTCAAGGGTTTAGGAGATTTT CAAAAAGGTCAATACCAAAACCGAAATGTGCGCTTTGGGGTTCGGGAACATGGAATGGGAGCAATTTGTAACGGTATTGC TCTACACGGTTCTGGGTTAATTTCTTATGGTGCAACTTTCTTGGTGTTTACTGACTATATGCGGAACTCTATCCGTTTAT CTGCTTTAGCTGAAGCTGGTGTTATTTGGGTAATGACTCACGACTCCATCGCTTTGGGTGAAGACGGACCGACTCACCAA CCAGTTGAACATATTGCATCCTTACGTTTGATTCCACAACTGATAGTTATTCGTCCAGCAGATGGTAATGAAACTTCTGG GGCTTATAAGATTGCAGTAGAAAAAGCTAAAGCAAGTCATCCTCAACCGACTCTGTTAGCATTATCTCGTCAAGGTTTAC CTAATTTAGCTGGTAGTTCTATTGATGCGGTTGCTAAAGGTGCTTATGTGCTTAGTGACAGCGAGGGTACTCCTGACATT ATTCTTATTGGTACTGGTGGTGAAACTTACCAATGTGTGGAAGCTGGTGAAAAACTTCGTGCTGAAGGTAAGAAGGTTCG GGTAGTTTCTATGCCATGTTGGGAATTATTTGAAGAGCAGGATGCAGCTTATAAGGAGTCTGTGTTCCCTGCGTCTGTGA AGAAGCGTTTGGCAGTGGAAGCAGGTGTTAGTTTTGGTTGGCATCGTTATGTGACTGATGAAGGTGCGACTTTGAGTGTT GATACTTTTGGTGCTTCTGCTCCTGGCGGTGTGGTACTGGAAAAGTTTGGATTTACTGTTGATAACATTGTAGCTAAGGC TAAGGCATTGTTGGGTTAA
Upstream 100 bases:
>100_bases GGCTTGAGAAACATTCCAGACAAATATCACTGTAGAAAAATATCTGGTTGATCAGCTCTGGCATTTACACACTTGATTAA TTATATAGATAACGATAACT
Downstream 100 bases:
>100_bases TTTTGATGGTGGGTTGTTTATAGCGATCGGCTATCAGTTAGGGTTTAAATTTTTAAGCTATTATCTGTAAAGTTTTATGC CTTAATTGTAGTGCTTGCTA
Product: transketolase
Products: NA
Alternate protein names: TK [H]
Number of amino acids: Translated: 672; Mature: 671
Protein sequence:
>672_residues MAVATQSLEELCINSIRFLAIDAVQKANSGHPGLPMGAAPMAFVLWDKLMRFNPKNPKWLNRDRFVLSAGHGCMLQYALM HLTGYDSVPIEEIKQFRQWNSKTPGHPENHITEGIEVTTGPLGQGIANAVGLAAAEAHLAAVFNKPDCNLIDHYTYVIVG DGCNMEGISGEACSLAGHWGLGKLIAFYDDNHISIDGHTDISFTEDVGKRFEAYGWHVQHVSDGNTNLEAIAEAIEKAKA VTDKPSLIKVTTIIGYGSPNKADTHDVHGAALGPDEVAATRKHLGWEYPEFEVPPDALSHFRKAVERGAKYEEEWNQLFS EYKSKYPEDAATLERMVSGKLPEGWADALPKYTPESKKDATRNQSGATLNAIAGVLPELIGGSADLAPSNKTLLKGLGDF QKGQYQNRNVRFGVREHGMGAICNGIALHGSGLISYGATFLVFTDYMRNSIRLSALAEAGVIWVMTHDSIALGEDGPTHQ PVEHIASLRLIPQLIVIRPADGNETSGAYKIAVEKAKASHPQPTLLALSRQGLPNLAGSSIDAVAKGAYVLSDSEGTPDI ILIGTGGETYQCVEAGEKLRAEGKKVRVVSMPCWELFEEQDAAYKESVFPASVKKRLAVEAGVSFGWHRYVTDEGATLSV DTFGASAPGGVVLEKFGFTVDNIVAKAKALLG
Sequences:
>Translated_672_residues MAVATQSLEELCINSIRFLAIDAVQKANSGHPGLPMGAAPMAFVLWDKLMRFNPKNPKWLNRDRFVLSAGHGCMLQYALM HLTGYDSVPIEEIKQFRQWNSKTPGHPENHITEGIEVTTGPLGQGIANAVGLAAAEAHLAAVFNKPDCNLIDHYTYVIVG DGCNMEGISGEACSLAGHWGLGKLIAFYDDNHISIDGHTDISFTEDVGKRFEAYGWHVQHVSDGNTNLEAIAEAIEKAKA VTDKPSLIKVTTIIGYGSPNKADTHDVHGAALGPDEVAATRKHLGWEYPEFEVPPDALSHFRKAVERGAKYEEEWNQLFS EYKSKYPEDAATLERMVSGKLPEGWADALPKYTPESKKDATRNQSGATLNAIAGVLPELIGGSADLAPSNKTLLKGLGDF QKGQYQNRNVRFGVREHGMGAICNGIALHGSGLISYGATFLVFTDYMRNSIRLSALAEAGVIWVMTHDSIALGEDGPTHQ PVEHIASLRLIPQLIVIRPADGNETSGAYKIAVEKAKASHPQPTLLALSRQGLPNLAGSSIDAVAKGAYVLSDSEGTPDI ILIGTGGETYQCVEAGEKLRAEGKKVRVVSMPCWELFEEQDAAYKESVFPASVKKRLAVEAGVSFGWHRYVTDEGATLSV DTFGASAPGGVVLEKFGFTVDNIVAKAKALLG >Mature_671_residues AVATQSLEELCINSIRFLAIDAVQKANSGHPGLPMGAAPMAFVLWDKLMRFNPKNPKWLNRDRFVLSAGHGCMLQYALMH LTGYDSVPIEEIKQFRQWNSKTPGHPENHITEGIEVTTGPLGQGIANAVGLAAAEAHLAAVFNKPDCNLIDHYTYVIVGD GCNMEGISGEACSLAGHWGLGKLIAFYDDNHISIDGHTDISFTEDVGKRFEAYGWHVQHVSDGNTNLEAIAEAIEKAKAV TDKPSLIKVTTIIGYGSPNKADTHDVHGAALGPDEVAATRKHLGWEYPEFEVPPDALSHFRKAVERGAKYEEEWNQLFSE YKSKYPEDAATLERMVSGKLPEGWADALPKYTPESKKDATRNQSGATLNAIAGVLPELIGGSADLAPSNKTLLKGLGDFQ KGQYQNRNVRFGVREHGMGAICNGIALHGSGLISYGATFLVFTDYMRNSIRLSALAEAGVIWVMTHDSIALGEDGPTHQP VEHIASLRLIPQLIVIRPADGNETSGAYKIAVEKAKASHPQPTLLALSRQGLPNLAGSSIDAVAKGAYVLSDSEGTPDII LIGTGGETYQCVEAGEKLRAEGKKVRVVSMPCWELFEEQDAAYKESVFPASVKKRLAVEAGVSFGWHRYVTDEGATLSVD TFGASAPGGVVLEKFGFTVDNIVAKAKALLG
Specific function: Unknown
COG id: COG0021
COG function: function code G; Transketolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transketolase family [H]
Homologues:
Organism=Homo sapiens, GI205277463, Length=590, Percent_Identity=25.2542372881356, Blast_Score=150, Evalue=3e-36, Organism=Homo sapiens, GI4507521, Length=590, Percent_Identity=25.2542372881356, Blast_Score=150, Evalue=3e-36, Organism=Homo sapiens, GI133778974, Length=582, Percent_Identity=23.7113402061856, Blast_Score=134, Evalue=4e-31, Organism=Homo sapiens, GI225637459, Length=592, Percent_Identity=22.1283783783784, Blast_Score=108, Evalue=2e-23, Organism=Homo sapiens, GI225637461, Length=514, Percent_Identity=22.568093385214, Blast_Score=100, Evalue=8e-21, Organism=Homo sapiens, GI225637463, Length=514, Percent_Identity=22.568093385214, Blast_Score=100, Evalue=8e-21, Organism=Escherichia coli, GI48994911, Length=674, Percent_Identity=53.2640949554896, Blast_Score=687, Evalue=0.0, Organism=Escherichia coli, GI1788808, Length=665, Percent_Identity=53.8345864661654, Blast_Score=683, Evalue=0.0, Organism=Caenorhabditis elegans, GI17539652, Length=596, Percent_Identity=26.1744966442953, Blast_Score=142, Evalue=5e-34, Organism=Saccharomyces cerevisiae, GI6325331, Length=669, Percent_Identity=51.7189835575486, Blast_Score=656, Evalue=0.0, Organism=Saccharomyces cerevisiae, GI6319593, Length=672, Percent_Identity=49.1071428571429, Blast_Score=633, Evalue=0.0, Organism=Drosophila melanogaster, GI24666278, Length=599, Percent_Identity=25.7095158597663, Blast_Score=155, Evalue=9e-38, Organism=Drosophila melanogaster, GI45551847, Length=284, Percent_Identity=34.1549295774648, Blast_Score=132, Evalue=9e-31, Organism=Drosophila melanogaster, GI45550715, Length=284, Percent_Identity=34.1549295774648, Blast_Score=132, Evalue=9e-31, Organism=Drosophila melanogaster, GI24645119, Length=242, Percent_Identity=34.7107438016529, Blast_Score=115, Evalue=8e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005475 - InterPro: IPR005478 - InterPro: IPR020826 - InterPro: IPR005476 - InterPro: IPR005474 [H]
Pfam domain/function: PF02779 Transket_pyr; PF02780 Transketolase_C; PF00456 Transketolase_N [H]
EC number: =2.2.1.1 [H]
Molecular weight: Translated: 72428; Mature: 72296
Theoretical pI: Translated: 5.94; Mature: 5.94
Prosite motif: PS00801 TRANSKETOLASE_1 ; PS00802 TRANSKETOLASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVATQSLEELCINSIRFLAIDAVQKANSGHPGLPMGAAPMAFVLWDKLMRFNPKNPKWL CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC NRDRFVLSAGHGCMLQYALMHLTGYDSVPIEEIKQFRQWNSKTPGHPENHITEGIEVTTG CCCEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHCCCCEEECC PLGQGIANAVGLAAAEAHLAAVFNKPDCNLIDHYTYVIVGDGCNMEGISGEACSLAGHWG CCCHHHHHHHHHHHHHHHHHHEECCCCCCEEECEEEEEEECCCCCCCCCCCCEEECCCCC LGKLIAFYDDNHISIDGHTDISFTEDVGKRFEAYGWHVQHVSDGNTNLEAIAEAIEKAKA CCCEEEEEECCEEEECCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHH VTDKPSLIKVTTIIGYGSPNKADTHDVHGAALGPDEVAATRKHLGWEYPEFEVPPDALSH CCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHH FRKAVERGAKYEEEWNQLFSEYKSKYPEDAATLERMVSGKLPEGWADALPKYTPESKKDA HHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCCHHHH TRNQSGATLNAIAGVLPELIGGSADLAPSNKTLLKGLGDFQKGQYQNRNVRFGVREHGMG CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHCCCCCCCCEEECHHHCCCC AICNGIALHGSGLISYGATFLVFTDYMRNSIRLSALAEAGVIWVMTHDSIALGEDGPTHQ HHHCCEEEECCCHHHHCHHHHHHHHHHHCCEEHEEHHCCCEEEEEECCCEEECCCCCCCH PVEHIASLRLIPQLIVIRPADGNETSGAYKIAVEKAKASHPQPTLLALSRQGLPNLAGSS HHHHHHHHHHCCEEEEEECCCCCCCCCEEEEEEEHHHCCCCCCCEEEEECCCCCCCCCCC IDAVAKGAYVLSDSEGTPDIILIGTGGETYQCVEAGEKLRAEGKKVRVVSMPCWELFEEQ HHHHHCCCEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHH DAAYKESVFPASVKKRLAVEAGVSFGWHRYVTDEGATLSVDTFGASAPGGVVLEKFGFTV HHHHHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHCCCH DNIVAKAKALLG HHHHHHHHHHCC >Mature Secondary Structure AVATQSLEELCINSIRFLAIDAVQKANSGHPGLPMGAAPMAFVLWDKLMRFNPKNPKWL CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC NRDRFVLSAGHGCMLQYALMHLTGYDSVPIEEIKQFRQWNSKTPGHPENHITEGIEVTTG CCCEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHCCCCEEECC PLGQGIANAVGLAAAEAHLAAVFNKPDCNLIDHYTYVIVGDGCNMEGISGEACSLAGHWG CCCHHHHHHHHHHHHHHHHHHEECCCCCCEEECEEEEEEECCCCCCCCCCCCEEECCCCC LGKLIAFYDDNHISIDGHTDISFTEDVGKRFEAYGWHVQHVSDGNTNLEAIAEAIEKAKA CCCEEEEEECCEEEECCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHH VTDKPSLIKVTTIIGYGSPNKADTHDVHGAALGPDEVAATRKHLGWEYPEFEVPPDALSH CCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHH FRKAVERGAKYEEEWNQLFSEYKSKYPEDAATLERMVSGKLPEGWADALPKYTPESKKDA HHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCCHHHH TRNQSGATLNAIAGVLPELIGGSADLAPSNKTLLKGLGDFQKGQYQNRNVRFGVREHGMG CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHCCCCCCCCEEECHHHCCCC AICNGIALHGSGLISYGATFLVFTDYMRNSIRLSALAEAGVIWVMTHDSIALGEDGPTHQ HHHCCEEEECCCHHHHCHHHHHHHHHHHCCEEHEEHHCCCEEEEEECCCEEECCCCCCCH PVEHIASLRLIPQLIVIRPADGNETSGAYKIAVEKAKASHPQPTLLALSRQGLPNLAGSS HHHHHHHHHHCCEEEEEECCCCCCCCCEEEEEEEHHHCCCCCCCEEEEECCCCCCCCCCC IDAVAKGAYVLSDSEGTPDIILIGTGGETYQCVEAGEKLRAEGKKVRVVSMPCWELFEEQ HHHHHCCCEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHH DAAYKESVFPASVKKRLAVEAGVSFGWHRYVTDEGATLSVDTFGASAPGGVVLEKFGFTV HHHHHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHCCCH DNIVAKAKALLG HHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]