| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474319
Identifier: 113474319
GI number: 113474319
Start: 707465
End: 709603
Strand: Reverse
Name: 113474319
Synonym: Tery_0448
Alternate gene names: NA
Gene position: 709603-707465 (Counterclockwise)
Preceding gene: 113474320
Following gene: 113474318
Centisome position: 9.16
GC content: 37.21
Gene sequence:
>2139_bases TTGATTCTTTCTCCTGAACTTTGTTCTCACTGGGATAGAGTAAAGGGCGACCAAATTTATACAGTTGATGTAGGAATTGC TTGTCTGGGAACGAAATCAATGTTGCCCAAGCATCCGAATCGAAAATATGATGAAAGTAAAGATAAATATAAAAAAAGAG TCAAGACTTGGATGGACAAGCGTGATATGACTTATGAATCTTGGGATGAACTACAACTAAAACGTCAAGATGAACTGGAA AAGTTTGTGAGTTTTTACAACGCAGACATTCAAAGTTTCATAGACGGGAAAATTGTAGCAGGAGCATCGTTACCAGATAG CTTTTCATGTCGAATGAAGATTTCAGGTAAAGGTTTAAAGGATCTAGTTTTGAACTTTCCTTATATATTTGATGTTAGTG AACCTGATGAATTTAGTGAATTAATTCAAAACTCAGGCTCATCTGAAACGGATAAGCCTTCTTTTGTTTTAGAAGCACCT GAATTAAATGCGCCAAAAGTCTGCGTAATAGACAGTGGTATTGAAGAAAGACATCCTTTGTTAAAATCAGCTATTGATCA ACAAAACTCCTCTGGCTGGGTTCCTGGGGAAACTGATCAAACTTCTGACTACGTTAAAAATGGCGGACATGGAACAAGAG TAGCGGGTGCTATTCTCTATCCCAGAAATATACCTCGGAATGGTACTCAAAAAGCTATTTGCTGGATTCAAAATGCTAGA GTTTTAAATCAATATTGTAAGCTTCCAGAAAAGTTATTTCCACCTAGTTTACTGAGTGAAATAGTTGAGTTATACAAGAA AACAGAAACACGAATATTTAATCATTCAATTACTGGAGCAGTTCCTAGTCGCCAAGTCTACATGAGTGCTTGGGCAGCTG CTATCGACCAACTTACTTGGCTTAATGATATTCTATTTATTGTTTCTGCTGGTAATTTACCTTTAGATAAACCTTCAGAT AGCAAGATAGGTATTACAAGATTGTCAGTTACAGATCACTTCAAAGCAAACCGCCCCTATCCTGATTATCTTTTAGAAGA CTCTTGCAGAATTGCTAACCCTGCTCAAAGCTTCCAAGCGCTAACTGTTGGTTCAGTTGCTTCCATTTACTACAACTCTC CACCTTATAGTTCAATATCAAAAACAGATATGCCCTCAGCTTTTTCCTGTTCAGGATGGGGAATTTGGCAGACAATTAAA CCAGAAGTAGTTGAGTATGGTGGCGATCTAGTCAAGGATGAAAGTACACCCCCAAAGATTACTTATTTTGAATCTGTAAT TTGTCCTGAGTTGGTACGTTCAACCCCGAGCGGTGGCCCTGCTATATCTTCTAACCAAGTAGGAACCTCTTTTGCGGCAC CAAAAGTTAGCCATATTGCAGCTTGTCTAGCTGCTGAATTACCCAATGAGAATTGTCTTTTATATCGTGCTTTAATTGTG CAGTCAGCTAGATGGCCTGAATGGACAAGAGATGAAAATATCGACAAGTTAAATATTATACGTCAAATTGGTTATGGAAT TCCTAATATTGACCGTGCTTTAGGAAATTCTGCCAACCGTATCACTTTAATTACAAGAGGAGAACAAAGAATTAAAGCTA AACAAGCTCATGTTTATCAAGTGAAATTACCAGAAAAATTACTTTCTCAGGGGGAAGAGTTAGAAATTCTAGTAGAAATT ACACTTTCCTACAAAGCTCAACCCCGTCGCACTAGACGAAATAGAAGAAGATATCTTTCAACATGGCTTGATTGGGAGTG TAGCAAAAAAGGAGAAGATCCTGATAGATTTTTAGCAAGAATTTTAAAGGATGATAATGCTCCAGAAGATTCAGACAAGG GAGAAGATCCATTTAAATGGACTCTCGGTAAACAGGGAAATTATGGTCAAGTTAAGGGTGTTTCTAGAACTGCAGGAACT CTTCAAAAAGATTGGGCAACTGTTAATTCATATAACCTTAGAGAAGCTTTTTGTATTGCAGTAGTCGGACATGAAGGATG GAATAACGATCCACATGCTGATGTTCCATATTCTCTTGTTGTGAGTTTTGAAGCTCTAGAAACTAATATCTCAATTTATA ATCCTGTTAAGAATGAAGTTGAAATAGAAATTCCCGACAAAATTCCCGATAAAATTTAG
Upstream 100 bases:
>100_bases TGAATTACAGACAAAAATAGAGAAATTTATTGCAGAAGAAAATAAAAGTGGTGCAGTTGCTGGAATATGGGAAATAATTG ATGGTACTAAGAAACCAGAG
Downstream 100 bases:
>100_bases GGATGAGGGAGTAGTATTTCGGAGCTTCATCAAAATAACTATCTAATTTAAACATTTCTAAAATTTCCTCTAATTAAAGA GGTTCTCTAGCAATAGGAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 712; Mature: 712
Protein sequence:
>712_residues MILSPELCSHWDRVKGDQIYTVDVGIACLGTKSMLPKHPNRKYDESKDKYKKRVKTWMDKRDMTYESWDELQLKRQDELE KFVSFYNADIQSFIDGKIVAGASLPDSFSCRMKISGKGLKDLVLNFPYIFDVSEPDEFSELIQNSGSSETDKPSFVLEAP ELNAPKVCVIDSGIEERHPLLKSAIDQQNSSGWVPGETDQTSDYVKNGGHGTRVAGAILYPRNIPRNGTQKAICWIQNAR VLNQYCKLPEKLFPPSLLSEIVELYKKTETRIFNHSITGAVPSRQVYMSAWAAAIDQLTWLNDILFIVSAGNLPLDKPSD SKIGITRLSVTDHFKANRPYPDYLLEDSCRIANPAQSFQALTVGSVASIYYNSPPYSSISKTDMPSAFSCSGWGIWQTIK PEVVEYGGDLVKDESTPPKITYFESVICPELVRSTPSGGPAISSNQVGTSFAAPKVSHIAACLAAELPNENCLLYRALIV QSARWPEWTRDENIDKLNIIRQIGYGIPNIDRALGNSANRITLITRGEQRIKAKQAHVYQVKLPEKLLSQGEELEILVEI TLSYKAQPRRTRRNRRRYLSTWLDWECSKKGEDPDRFLARILKDDNAPEDSDKGEDPFKWTLGKQGNYGQVKGVSRTAGT LQKDWATVNSYNLREAFCIAVVGHEGWNNDPHADVPYSLVVSFEALETNISIYNPVKNEVEIEIPDKIPDKI
Sequences:
>Translated_712_residues MILSPELCSHWDRVKGDQIYTVDVGIACLGTKSMLPKHPNRKYDESKDKYKKRVKTWMDKRDMTYESWDELQLKRQDELE KFVSFYNADIQSFIDGKIVAGASLPDSFSCRMKISGKGLKDLVLNFPYIFDVSEPDEFSELIQNSGSSETDKPSFVLEAP ELNAPKVCVIDSGIEERHPLLKSAIDQQNSSGWVPGETDQTSDYVKNGGHGTRVAGAILYPRNIPRNGTQKAICWIQNAR VLNQYCKLPEKLFPPSLLSEIVELYKKTETRIFNHSITGAVPSRQVYMSAWAAAIDQLTWLNDILFIVSAGNLPLDKPSD SKIGITRLSVTDHFKANRPYPDYLLEDSCRIANPAQSFQALTVGSVASIYYNSPPYSSISKTDMPSAFSCSGWGIWQTIK PEVVEYGGDLVKDESTPPKITYFESVICPELVRSTPSGGPAISSNQVGTSFAAPKVSHIAACLAAELPNENCLLYRALIV QSARWPEWTRDENIDKLNIIRQIGYGIPNIDRALGNSANRITLITRGEQRIKAKQAHVYQVKLPEKLLSQGEELEILVEI TLSYKAQPRRTRRNRRRYLSTWLDWECSKKGEDPDRFLARILKDDNAPEDSDKGEDPFKWTLGKQGNYGQVKGVSRTAGT LQKDWATVNSYNLREAFCIAVVGHEGWNNDPHADVPYSLVVSFEALETNISIYNPVKNEVEIEIPDKIPDKI >Mature_712_residues MILSPELCSHWDRVKGDQIYTVDVGIACLGTKSMLPKHPNRKYDESKDKYKKRVKTWMDKRDMTYESWDELQLKRQDELE KFVSFYNADIQSFIDGKIVAGASLPDSFSCRMKISGKGLKDLVLNFPYIFDVSEPDEFSELIQNSGSSETDKPSFVLEAP ELNAPKVCVIDSGIEERHPLLKSAIDQQNSSGWVPGETDQTSDYVKNGGHGTRVAGAILYPRNIPRNGTQKAICWIQNAR VLNQYCKLPEKLFPPSLLSEIVELYKKTETRIFNHSITGAVPSRQVYMSAWAAAIDQLTWLNDILFIVSAGNLPLDKPSD SKIGITRLSVTDHFKANRPYPDYLLEDSCRIANPAQSFQALTVGSVASIYYNSPPYSSISKTDMPSAFSCSGWGIWQTIK PEVVEYGGDLVKDESTPPKITYFESVICPELVRSTPSGGPAISSNQVGTSFAAPKVSHIAACLAAELPNENCLLYRALIV QSARWPEWTRDENIDKLNIIRQIGYGIPNIDRALGNSANRITLITRGEQRIKAKQAHVYQVKLPEKLLSQGEELEILVEI TLSYKAQPRRTRRNRRRYLSTWLDWECSKKGEDPDRFLARILKDDNAPEDSDKGEDPFKWTLGKQGNYGQVKGVSRTAGT LQKDWATVNSYNLREAFCIAVVGHEGWNNDPHADVPYSLVVSFEALETNISIYNPVKNEVEIEIPDKIPDKI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000209 - InterPro: IPR015500 [H]
Pfam domain/function: PF00082 Peptidase_S8 [H]
EC number: NA
Molecular weight: Translated: 80049; Mature: 80049
Theoretical pI: Translated: 6.38; Mature: 6.38
Prosite motif: PS00136 SUBTILASE_ASP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILSPELCSHWDRVKGDQIYTVDVGIACLGTKSMLPKHPNRKYDESKDKYKKRVKTWMDK CCCCCHHHHHHHHCCCCEEEEEEECEEEECCHHHCCCCCCCCCCCHHHHHHHHHHHHHHH RDMTYESWDELQLKRQDELEKFVSFYNADIQSFIDGKIVAGASLPDSFSCRMKISGKGLK CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEEECCCCHH DLVLNFPYIFDVSEPDEFSELIQNSGSSETDKPSFVLEAPELNAPKVCVIDSGIEERHPL HHHHCCCEEEECCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCCEEEEEECCCHHHHHH LKSAIDQQNSSGWVPGETDQTSDYVKNGGHGTRVAGAILYPRNIPRNGTQKAICWIQNAR HHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEEECCCCCCCCCCCEEEEEEHHHH VLNQYCKLPEKLFPPSLLSEIVELYKKTETRIFNHSITGAVPSRQVYMSAWAAAIDQLTW HHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH LNDILFIVSAGNLPLDKPSDSKIGITRLSVTDHFKANRPYPDYLLEDSCRIANPAQSFQA HHHEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCHHHCCCCCCCCHHHHHHH LTVGSVASIYYNSPPYSSISKTDMPSAFSCSGWGIWQTIKPEVVEYGGDLVKDESTPPKI HHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCCCCCCCE TYFESVICPELVRSTPSGGPAISSNQVGTSFAAPKVSHIAACLAAELPNENCLLYRALIV EHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH QSARWPEWTRDENIDKLNIIRQIGYGIPNIDRALGNSANRITLITRGEQRIKAKQAHVYQ HCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCCEEEEEECCHHHHHHHHCEEEE VKLPEKLLSQGEELEILVEITLSYKAQPRRTRRNRRRYLSTWLDWECSKKGEDPDRFLAR EECCHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH ILKDDNAPEDSDKGEDPFKWTLGKQGNYGQVKGVSRTAGTLQKDWATVNSYNLREAFCIA HHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEE VVGHEGWNNDPHADVPYSLVVSFEALETNISIYNPVKNEVEIEIPDKIPDKI EEECCCCCCCCCCCCCCEEEEEEEHHHCCCEEECCCCCCEEEECCCCCCCCC >Mature Secondary Structure MILSPELCSHWDRVKGDQIYTVDVGIACLGTKSMLPKHPNRKYDESKDKYKKRVKTWMDK CCCCCHHHHHHHHCCCCEEEEEEECEEEECCHHHCCCCCCCCCCCHHHHHHHHHHHHHHH RDMTYESWDELQLKRQDELEKFVSFYNADIQSFIDGKIVAGASLPDSFSCRMKISGKGLK CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEEECCCCHH DLVLNFPYIFDVSEPDEFSELIQNSGSSETDKPSFVLEAPELNAPKVCVIDSGIEERHPL HHHHCCCEEEECCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCCEEEEEECCCHHHHHH LKSAIDQQNSSGWVPGETDQTSDYVKNGGHGTRVAGAILYPRNIPRNGTQKAICWIQNAR HHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEEECCCCCCCCCCCEEEEEEHHHH VLNQYCKLPEKLFPPSLLSEIVELYKKTETRIFNHSITGAVPSRQVYMSAWAAAIDQLTW HHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH LNDILFIVSAGNLPLDKPSDSKIGITRLSVTDHFKANRPYPDYLLEDSCRIANPAQSFQA HHHEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCHHHCCCCCCCCHHHHHHH LTVGSVASIYYNSPPYSSISKTDMPSAFSCSGWGIWQTIKPEVVEYGGDLVKDESTPPKI HHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCCCCCCCE TYFESVICPELVRSTPSGGPAISSNQVGTSFAAPKVSHIAACLAAELPNENCLLYRALIV EHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH QSARWPEWTRDENIDKLNIIRQIGYGIPNIDRALGNSANRITLITRGEQRIKAKQAHVYQ HCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCCEEEEEECCHHHHHHHHCEEEE VKLPEKLLSQGEELEILVEITLSYKAQPRRTRRNRRRYLSTWLDWECSKKGEDPDRFLAR EECCHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH ILKDDNAPEDSDKGEDPFKWTLGKQGNYGQVKGVSRTAGTLQKDWATVNSYNLREAFCIA HHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEE VVGHEGWNNDPHADVPYSLVVSFEALETNISIYNPVKNEVEIEIPDKIPDKI EEECCCCCCCCCCCCCCEEEEEEEHHHCCCEEECCCCCCEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]