| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474242
Identifier: 113474242
GI number: 113474242
Start: 554156
End: 554713
Strand: Reverse
Name: 113474242
Synonym: Tery_0361
Alternate gene names: NA
Gene position: 554713-554156 (Counterclockwise)
Preceding gene: 113474243
Following gene: 113474239
Centisome position: 7.16
GC content: 31.72
Gene sequence:
>558_bases ATGACTGAATTTAGTGATTTTAAATCCTTTATTGATTCTTGGGAAGATAGATTTGTTGAAGTAACAGAGTTTGACATATT TAAACACAGTCCTCAGGGTAATATTAATAGTGATGGAACTGCTGCCTGTTGTGATTCGGCAATTTTTACTAAATATCATC GTTATTTTAAACAGTCAATTGAACAAGGAGTTAGAGATTTAACTATTGCCCTAATTCTGAAATTAAATTGTATAACCTAT TCTAGTTGTCAAGGTCATTTCTCTAGAGAAGATGCAGGGATGAGGCAGAGGTATGTAGCAGTTATGCCCCGGGATGAGGA GGAATATCAATGCTTATTTAATACTTTTAATCAAATAGCTGAATTGACAAATGAGAGATTTTCTGAACATCCAGTGAAAG TTTTTGTGGGTAATGATAATTTAAAAGATGAGGGGAAAATAATAAAATGTTTGACTTTGTTTTTTGTCTCAAATAATGCT GATGAAGCTGAATATTTTCGAGGAATTGAACCTGTCTATAATTATGTTTTACAACAAGTTAATCAAGGCAAAAATTAG
Upstream 100 bases:
>100_bases CCCTTCTTATTTTGTAGTTTTCGCCTTCTGAATTAAGCTATACATACTATATAATTATCTAGCTAACTATTGTTTTGGCA TTAAAAAAATATTTAAAATT
Downstream 100 bases:
>100_bases GATAAATTTGTATGTTTAAATTAGTTATAAAGTAGGAAAATTTTAGTTAAATTCCCTACTCTATAGCTGGATAAAATATT TATCTAATTTATTTTATTAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 185; Mature: 184
Protein sequence:
>185_residues MTEFSDFKSFIDSWEDRFVEVTEFDIFKHSPQGNINSDGTAACCDSAIFTKYHRYFKQSIEQGVRDLTIALILKLNCITY SSCQGHFSREDAGMRQRYVAVMPRDEEEYQCLFNTFNQIAELTNERFSEHPVKVFVGNDNLKDEGKIIKCLTLFFVSNNA DEAEYFRGIEPVYNYVLQQVNQGKN
Sequences:
>Translated_185_residues MTEFSDFKSFIDSWEDRFVEVTEFDIFKHSPQGNINSDGTAACCDSAIFTKYHRYFKQSIEQGVRDLTIALILKLNCITY SSCQGHFSREDAGMRQRYVAVMPRDEEEYQCLFNTFNQIAELTNERFSEHPVKVFVGNDNLKDEGKIIKCLTLFFVSNNA DEAEYFRGIEPVYNYVLQQVNQGKN >Mature_184_residues TEFSDFKSFIDSWEDRFVEVTEFDIFKHSPQGNINSDGTAACCDSAIFTKYHRYFKQSIEQGVRDLTIALILKLNCITYS SCQGHFSREDAGMRQRYVAVMPRDEEEYQCLFNTFNQIAELTNERFSEHPVKVFVGNDNLKDEGKIIKCLTLFFVSNNAD EAEYFRGIEPVYNYVLQQVNQGKN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21500; Mature: 21369
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEFSDFKSFIDSWEDRFVEVTEFDIFKHSPQGNINSDGTAACCDSAIFTKYHRYFKQSI CCCHHHHHHHHHHHHHHEEEHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH EQGVRDLTIALILKLNCITYSSCQGHFSREDAGMRQRYVAVMPRDEEEYQCLFNTFNQIA HHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHEEEECCCCCHHHHHHHHHHHHHH ELTNERFSEHPVKVFVGNDNLKDEGKIIKCLTLFFVSNNADEAEYFRGIEPVYNYVLQQV HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHH NQGKN HCCCC >Mature Secondary Structure TEFSDFKSFIDSWEDRFVEVTEFDIFKHSPQGNINSDGTAACCDSAIFTKYHRYFKQSI CCHHHHHHHHHHHHHHEEEHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH EQGVRDLTIALILKLNCITYSSCQGHFSREDAGMRQRYVAVMPRDEEEYQCLFNTFNQIA HHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHEEEECCCCCHHHHHHHHHHHHHH ELTNERFSEHPVKVFVGNDNLKDEGKIIKCLTLFFVSNNADEAEYFRGIEPVYNYVLQQV HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHH NQGKN HCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA