| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113474223
Identifier: 113474223
GI number: 113474223
Start: 516434
End: 517675
Strand: Reverse
Name: 113474223
Synonym: Tery_0337
Alternate gene names: NA
Gene position: 517675-516434 (Counterclockwise)
Preceding gene: 113474225
Following gene: 113474221
Centisome position: 6.68
GC content: 35.1
Gene sequence:
>1242_bases ATGCACGCAGAAAAGGTAGTATCCCAAACATTTCGTCGAGTTCGTCCACGATATCGTCCAGTAAAAAAACGGCCAGTTAA AGTTCGTCGGCGAGTTAAAACCAAAAATATACAGTTAATATTATTACAGTTAAAATATAAAAATATATTTATTTTAGTTG CTTTATTAATGACAGTGAGCTGGATTATTACCTTACCTTTTAGAGGTCGGCCAGCTTCAGAGAAACCTTTACCTACTCCT GCATCTTCTGTATCACCTACCCTAATACCACCCTATGTACCCCCAGTTCCTGAAGAAACTCCAAAAGATTTAGGATTTGC CTATAATGTTCGTAGACAAACATACAAACGTAATAGCCCGCAGTTACAAGAAATAGTTGATGAATTACTCAGTATTGCTA AAGAAAAAGGGCTGCCTACAGCGCCTCTATCTATTAGTTTAATTGATGTTAGTAACCCAGATCTTCACACATATGCTGGA TATAAAAATCAAGTTTTAAGATACCCTGCTAGTGTAGCCAAATTATTTTGGATGGCTGCATTTTATGGAGCAGTTGAACA AAGTTTAATTGATAATGAACCGAAGTTTTATGAAGATTTAAGATTAATGATGCAGAAATCTCATAATGATTCTGCTAGTA GAATTTTAGATGCAATTACTGATACAAAATCAGGGGTTAAATTGGAAGGCAAAAAGTTAAATACTTGGTTAGAAAAAAGA AAATCAGTCAATGAATTTTTTCAAAAAGCTGGTTACCAAGATTTAATAGTTAGTACAAAAAACTATCCAAGATATTCTCC TAGTCAAACAGGTCCAGTAGGTCGCGATCGCCAACTACGAAAGCAAGATGGTAAGTTTCTCCGAAATTTGATTTCAACTG ACCAGGCTACCAGATTAATATATGAAATATACACTAGGCAGGCAGTTTCACGAAAGTATAGTACGAGAATGGCTTATTTA TTAACGAGAGATTTAAGACCCCAAGTATGGCAGAATGATCCCTACAATGGAGTCAAAGGTTTTCTGGGAGAGTCTCTGCC TGCTAATATTTATTTCGGTTCTAAAGTTGGTTTGACTTCTAAAGATCGTATGGATGTCGCCTTTGTCAGAACTTTAGATA ATCAAGCTATTTATATTTTAGCAATTTTTGCAGAAGATGCTGCTTATTCTAATGATGAAGAAATATTTCCTAAATTGTCT CGTCATGTTTATGATCGCATGATGGCAATGGATAGCAAATAA
Upstream 100 bases:
>100_bases CAATGGTTAAGATAATATCTTTTTAACCAATACTTTTAGATATTATAGTCTTCAAAAGCAATAAAATTATCAATACTTAT ATTTTTCATATCCTATTCAA
Downstream 100 bases:
>100_bases ATTGGATGGTCATTAGAGTTGTTTGGAAATAAGCCCAATAACTCTAATAAGTTAATAACTTGTAGCTGGTAGCTAATAGC TGACCGCTGAATGGTTACTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 413; Mature: 413
Protein sequence:
>413_residues MHAEKVVSQTFRRVRPRYRPVKKRPVKVRRRVKTKNIQLILLQLKYKNIFILVALLMTVSWIITLPFRGRPASEKPLPTP ASSVSPTLIPPYVPPVPEETPKDLGFAYNVRRQTYKRNSPQLQEIVDELLSIAKEKGLPTAPLSISLIDVSNPDLHTYAG YKNQVLRYPASVAKLFWMAAFYGAVEQSLIDNEPKFYEDLRLMMQKSHNDSASRILDAITDTKSGVKLEGKKLNTWLEKR KSVNEFFQKAGYQDLIVSTKNYPRYSPSQTGPVGRDRQLRKQDGKFLRNLISTDQATRLIYEIYTRQAVSRKYSTRMAYL LTRDLRPQVWQNDPYNGVKGFLGESLPANIYFGSKVGLTSKDRMDVAFVRTLDNQAIYILAIFAEDAAYSNDEEIFPKLS RHVYDRMMAMDSK
Sequences:
>Translated_413_residues MHAEKVVSQTFRRVRPRYRPVKKRPVKVRRRVKTKNIQLILLQLKYKNIFILVALLMTVSWIITLPFRGRPASEKPLPTP ASSVSPTLIPPYVPPVPEETPKDLGFAYNVRRQTYKRNSPQLQEIVDELLSIAKEKGLPTAPLSISLIDVSNPDLHTYAG YKNQVLRYPASVAKLFWMAAFYGAVEQSLIDNEPKFYEDLRLMMQKSHNDSASRILDAITDTKSGVKLEGKKLNTWLEKR KSVNEFFQKAGYQDLIVSTKNYPRYSPSQTGPVGRDRQLRKQDGKFLRNLISTDQATRLIYEIYTRQAVSRKYSTRMAYL LTRDLRPQVWQNDPYNGVKGFLGESLPANIYFGSKVGLTSKDRMDVAFVRTLDNQAIYILAIFAEDAAYSNDEEIFPKLS RHVYDRMMAMDSK >Mature_413_residues MHAEKVVSQTFRRVRPRYRPVKKRPVKVRRRVKTKNIQLILLQLKYKNIFILVALLMTVSWIITLPFRGRPASEKPLPTP ASSVSPTLIPPYVPPVPEETPKDLGFAYNVRRQTYKRNSPQLQEIVDELLSIAKEKGLPTAPLSISLIDVSNPDLHTYAG YKNQVLRYPASVAKLFWMAAFYGAVEQSLIDNEPKFYEDLRLMMQKSHNDSASRILDAITDTKSGVKLEGKKLNTWLEKR KSVNEFFQKAGYQDLIVSTKNYPRYSPSQTGPVGRDRQLRKQDGKFLRNLISTDQATRLIYEIYTRQAVSRKYSTRMAYL LTRDLRPQVWQNDPYNGVKGFLGESLPANIYFGSKVGLTSKDRMDVAFVRTLDNQAIYILAIFAEDAAYSNDEEIFPKLS RHVYDRMMAMDSK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47541; Mature: 47541
Theoretical pI: Translated: 10.43; Mature: 10.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHAEKVVSQTFRRVRPRYRPVKKRPVKVRRRVKTKNIQLILLQLKYKNIFILVALLMTVS CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCEEEEEEEEHHHHHHHHHHHHHHHH WIITLPFRGRPASEKPLPTPASSVSPTLIPPYVPPVPEETPKDLGFAYNVRRQTYKRNSP HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHCCCCC QLQEIVDELLSIAKEKGLPTAPLSISLIDVSNPDLHTYAGYKNQVLRYPASVAKLFWMAA HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEECCCCHHHHHHHHHHHHHHHHHHH FYGAVEQSLIDNEPKFYEDLRLMMQKSHNDSASRILDAITDTKSGVKLEGKKLNTWLEKR HHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEECCHHHHHHHHHH KSVNEFFQKAGYQDLIVSTKNYPRYSPSQTGPVGRDRQLRKQDGKFLRNLISTDQATRLI HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH YEIYTRQAVSRKYSTRMAYLLTRDLRPQVWQNDPYNGVKGFLGESLPANIYFGSKVGLTS HHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCHHHHHHCCCCCCEEEECCCCCCCC KDRMDVAFVRTLDNQAIYILAIFAEDAAYSNDEEIFPKLSRHVYDRMMAMDSK CCCCHHHHEEECCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MHAEKVVSQTFRRVRPRYRPVKKRPVKVRRRVKTKNIQLILLQLKYKNIFILVALLMTVS CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCEEEEEEEEHHHHHHHHHHHHHHHH WIITLPFRGRPASEKPLPTPASSVSPTLIPPYVPPVPEETPKDLGFAYNVRRQTYKRNSP HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHCCCCC QLQEIVDELLSIAKEKGLPTAPLSISLIDVSNPDLHTYAGYKNQVLRYPASVAKLFWMAA HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEECCCCHHHHHHHHHHHHHHHHHHH FYGAVEQSLIDNEPKFYEDLRLMMQKSHNDSASRILDAITDTKSGVKLEGKKLNTWLEKR HHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEECCHHHHHHHHHH KSVNEFFQKAGYQDLIVSTKNYPRYSPSQTGPVGRDRQLRKQDGKFLRNLISTDQATRLI HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH YEIYTRQAVSRKYSTRMAYLLTRDLRPQVWQNDPYNGVKGFLGESLPANIYFGSKVGLTS HHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCHHHHHHCCCCCCEEEECCCCCCCC KDRMDVAFVRTLDNQAIYILAIFAEDAAYSNDEEIFPKLSRHVYDRMMAMDSK CCCCHHHHEEECCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA