| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474196
Identifier: 113474196
GI number: 113474196
Start: 471882
End: 474209
Strand: Reverse
Name: 113474196
Synonym: Tery_0306
Alternate gene names: NA
Gene position: 474209-471882 (Counterclockwise)
Preceding gene: 113474197
Following gene: 113474195
Centisome position: 6.12
GC content: 35.48
Gene sequence:
>2328_bases TTGTTGGCTACAAGTTGGGGGTCTGTTTCTCTGGTTTTTGTATTAGTATCAAGGTCAATTTCTGGTTCTAGTTCTAGAGG TTTTTTGAAGATAGAAATTGCTGGTTCCATTTTTCCCTATTTTGCTAATTTTTTACCTTCTTTTACTTTGGCAGGAGCAG CAAATTTGTTGGCTACAAGTTGGGGGTCTGTTTCTCTGGTTTTTGTATTAGTATCAAGGTCAATTTCTGGTTCCAGTTAT AGAGCTTTTTTGAAGATAGAAATTGCTGGTTCCATTTTTCCCTATTTTGCTAATTTTTTACCTTCTTTTACTTTGGCAGG AGCAGCAAATTTGTTGGCTACAAGTTGGGGGTCTGTTTCTCTGGTTTTTGTATTAGTATCAAGGTCAATTTCTGGTTCTA GTTATAGAGCTTTTTTGAAGATAGAAATTGCTGATTCCATTTTTCCCTATTTTGCTAATTTTTTACCTTCTTTTACTTTG GCAGGAGCAGCAAATTTGTTGGCTACAAGTTGGGGGTCTGTTTCTCTGGTTTTTGTATTAGTATCAAGGTCAATTTCTGG TTCTAGTTCTAGAGCTTTTTTGAAGATAGAAATTGCTGGTTCCATTTTTCCCTATTTTGCTAATTTTTTACCTTCTTTTA CTTTGGCAGGAGCAGCAAATTTGTTGGCTACAAGTTGGGGGTCTGTTTCTCTGGTTTTTGTATTAGTATCAAGGTCAATT TCTGGTTCCAGTTCTAGAGATTTTTTGAAGATAGAAATTGTCTGTTCCATTTTTCCCTATTTTGCTAATTTTTTACCTTC TTTTACTTTGGCAGGAGCAGCAAATTTGTTGGCTACAAGTTGGGGGTCTGTTTCTCTGGTTTTTGTATTAGGATCGAGGT CAATTTCTGGTTCTAGTTCTAGAGGTTTTTTGAAGATAGAAATTGCTGGTTCCATTTTTCCCTATTTTGCTAATTTTTTA CCTTCTTTTACTTTGGCAGGAGCAGCAAATTTGTTGGCTACAAGTTGGGGGTCTGTTTCTCTGGTTTTTGTATTAGTATC AAGGTCAATTTCTGGTTCCAGTTCTAGAGATTTTTTGAAGATAGAAATTGTCTGTTCCATTTTTCCCTATTTTGCTAATT TTTTACCTTCTTTTACTTTGGCAGGAGCAGCAAATTTGTTGGCTACAAGTTGGGGGTCTGTTTCTCTGGTTTTTGTATTA GTATCAAGGTCAATTTCTGGTTCCAGTTCTAGAGATTTTTTGAAGATAGAAATTGTCTGTTTTATTTTTCCCTATTTTGC TAATTTTTTACCTTCTTTTACTTTGGCAGGAGCAGCAAATTTGTTGGCTACAAGTTGGGGGTCTATTTCTCTGGTTTTTG TATTAGTATTGAGGTCAATTTCTGGTTCCAGTTCTAGAGGTTTTTTGAAGATAGAAATTGCTGGTTCCATTTTTCCCTAT TTTGCTAATTTTTTACCTTCTTTTACTTTGGCAGGAGCAGAAAATTTGTTGGCTACAAGTTGGGGGTCTGTTTCTCTGGT TTTTGTATTAGTATCAAGGTCAATTTCTGGTTCCAGTTCTAGAGATTTTTTGAAGATAGAAATTGTCTGTTTTATTTTTC CCTATTTTGCTAATTTTTTACCTTCTTTTACTTTGGCAGGAGCAGCAAATTTGTTGGCTACAAGTTGGGGGTCTGTTTCT CTGGTTTTTGTATTAGTATCAAGGTCAATTTCTGGTTCCAGTTCTAGAGATTTTTTGAAGATAGAAATTGCTGGTTCCAT TTTTCCCTATTTTGCTAATTTTTTACCTTCTTTTACTTTGGCAGGAGCAGCAAATTTGTTGGCTACAAGTTGGGGGTCTG TTTCTCTGGTTTTTGTATTAGTATCAAGGTCAATTTCTGGTTCCAGTTCTAGAGGTTTTTTGAAGATAGAAATTGCTGGT TCCATTTTTCCCTATTTTGCTAATTTTTTACCTTCTTTTACTTTGGCAGGAGCAGCAAATTTGTTGGCTACAAGTTGGGG GTCTGTTTCTCTGGTTTTTGTATTAGTATCAAGGTCAATTTCTGGTTCCAGTTCTAGAGATTTTTTGAAGATAGAAATTG CTGGTTCCATTTTTCCCTATTTTGCTAATTTTTTACCTTCTTTTACTTTGGCAGGAGCAGCAAATTTGTTGGCTACAAGT TGGGGGTCTGTTTCTCTGGTTTTTGTATTAGTATCAAGGTCAATTTCTGGTTCCAGTTCTAGAGGTTTTTTGAAGATAGA AATTGCTGGTTCCATTTTTCCCTATTTTGCTAATTTTTTACCTTCTTTTACTTTGGCAGGAGCAGCAAATTTGTTGGCTA CAAGTTGA
Upstream 100 bases:
>100_bases TTCTAGTTCTAGAGATTTTTTGAAGATAGAAATTGTCTGTTTTATTTTTCCCTATTTTGCTAGTTTTTTACCTTCTTCTA CTTTGGCATAAGCAGCAAAT
Downstream 100 bases:
>100_bases GGGTCTGTTTCTCTGGTTTTTGTATTAGGAACGAGGTCAATTTCTGGTTCCAGTTCTAGAGCTTTTTTGAAGATAGAAAT TGCTGGTTCCATTTTTCCCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 775; Mature: 775
Protein sequence:
>775_residues MLATSWGSVSLVFVLVSRSISGSSSRGFLKIEIAGSIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVLVSRSISGSSY RAFLKIEIAGSIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVLVSRSISGSSYRAFLKIEIADSIFPYFANFLPSFTL AGAANLLATSWGSVSLVFVLVSRSISGSSSRAFLKIEIAGSIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVLVSRSI SGSSSRDFLKIEIVCSIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVLGSRSISGSSSRGFLKIEIAGSIFPYFANFL PSFTLAGAANLLATSWGSVSLVFVLVSRSISGSSSRDFLKIEIVCSIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVL VSRSISGSSSRDFLKIEIVCFIFPYFANFLPSFTLAGAANLLATSWGSISLVFVLVLRSISGSSSRGFLKIEIAGSIFPY FANFLPSFTLAGAENLLATSWGSVSLVFVLVSRSISGSSSRDFLKIEIVCFIFPYFANFLPSFTLAGAANLLATSWGSVS LVFVLVSRSISGSSSRDFLKIEIAGSIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVLVSRSISGSSSRGFLKIEIAG SIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVLVSRSISGSSSRDFLKIEIAGSIFPYFANFLPSFTLAGAANLLATS WGSVSLVFVLVSRSISGSSSRGFLKIEIAGSIFPYFANFLPSFTLAGAANLLATS
Sequences:
>Translated_775_residues MLATSWGSVSLVFVLVSRSISGSSSRGFLKIEIAGSIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVLVSRSISGSSY RAFLKIEIAGSIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVLVSRSISGSSYRAFLKIEIADSIFPYFANFLPSFTL AGAANLLATSWGSVSLVFVLVSRSISGSSSRAFLKIEIAGSIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVLVSRSI SGSSSRDFLKIEIVCSIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVLGSRSISGSSSRGFLKIEIAGSIFPYFANFL PSFTLAGAANLLATSWGSVSLVFVLVSRSISGSSSRDFLKIEIVCSIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVL VSRSISGSSSRDFLKIEIVCFIFPYFANFLPSFTLAGAANLLATSWGSISLVFVLVLRSISGSSSRGFLKIEIAGSIFPY FANFLPSFTLAGAENLLATSWGSVSLVFVLVSRSISGSSSRDFLKIEIVCFIFPYFANFLPSFTLAGAANLLATSWGSVS LVFVLVSRSISGSSSRDFLKIEIAGSIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVLVSRSISGSSSRGFLKIEIAG SIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVLVSRSISGSSSRDFLKIEIAGSIFPYFANFLPSFTLAGAANLLATS WGSVSLVFVLVSRSISGSSSRGFLKIEIAGSIFPYFANFLPSFTLAGAANLLATS >Mature_775_residues MLATSWGSVSLVFVLVSRSISGSSSRGFLKIEIAGSIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVLVSRSISGSSY RAFLKIEIAGSIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVLVSRSISGSSYRAFLKIEIADSIFPYFANFLPSFTL AGAANLLATSWGSVSLVFVLVSRSISGSSSRAFLKIEIAGSIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVLVSRSI SGSSSRDFLKIEIVCSIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVLGSRSISGSSSRGFLKIEIAGSIFPYFANFL PSFTLAGAANLLATSWGSVSLVFVLVSRSISGSSSRDFLKIEIVCSIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVL VSRSISGSSSRDFLKIEIVCFIFPYFANFLPSFTLAGAANLLATSWGSISLVFVLVLRSISGSSSRGFLKIEIAGSIFPY FANFLPSFTLAGAENLLATSWGSVSLVFVLVSRSISGSSSRDFLKIEIVCFIFPYFANFLPSFTLAGAANLLATSWGSVS LVFVLVSRSISGSSSRDFLKIEIAGSIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVLVSRSISGSSSRGFLKIEIAG SIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVLVSRSISGSSSRDFLKIEIAGSIFPYFANFLPSFTLAGAANLLATS WGSVSLVFVLVSRSISGSSSRGFLKIEIAGSIFPYFANFLPSFTLAGAANLLATS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 81922; Mature: 81922
Theoretical pI: Translated: 10.41; Mature: 10.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.1 %Met (Translated Protein) 0.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.1 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLATSWGSVSLVFVLVSRSISGSSSRGFLKIEIAGSIFPYFANFLPSFTLAGAANLLATS CCCCCCCCHHEEEEEHHCCCCCCCCCCEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHCC WGSVSLVFVLVSRSISGSSYRAFLKIEIAGSIFPYFANFLPSFTLAGAANLLATSWGSVS CCCHHEEEEEHHCCCCCCCEEEEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHH LVFVLVSRSISGSSYRAFLKIEIADSIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVL EEEEEHHCCCCCCCEEEEEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHEEEEE VSRSISGSSSRAFLKIEIAGSIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVLVSRSI HHCCCCCCCCCEEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHEEEEEHHCCC SGSSSRDFLKIEIVCSIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVLGSRSISGSSS CCCCCCCEEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCC RGFLKIEIAGSIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVLVSRSISGSSSRDFLK CCEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHEEEEEHHCCCCCCCCCCEEE IEIVCSIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVLVSRSISGSSSRDFLKIEIVC EEEHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHEEEEEHHCCCCCCCCCCEEEEEEHH FIFPYFANFLPSFTLAGAANLLATSWGSISLVFVLVLRSISGSSSRGFLKIEIAGSIFPY HHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHH FANFLPSFTLAGAENLLATSWGSVSLVFVLVSRSISGSSSRDFLKIEIVCFIFPYFANFL HHHHCCCEECCCCCHHHHCCCCCHHEEEEEHHCCCCCCCCCCEEEEEEHHHHHHHHHHHC PSFTLAGAANLLATSWGSVSLVFVLVSRSISGSSSRDFLKIEIAGSIFPYFANFLPSFTL CCHHHHHHHHHHHCCCCCHHEEEEEHHCCCCCCCCCCEEEEEECCCHHHHHHHHCCCHHH AGAANLLATSWGSVSLVFVLVSRSISGSSSRGFLKIEIAGSIFPYFANFLPSFTLAGAAN HHHHHHHHCCCCCHHEEEEEHHCCCCCCCCCCEEEEEECCCHHHHHHHHCCCHHHHHHHH LLATSWGSVSLVFVLVSRSISGSSSRDFLKIEIAGSIFPYFANFLPSFTLAGAANLLATS HHHCCCCCHHEEEEEHHCCCCCCCCCCEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHCC WGSVSLVFVLVSRSISGSSSRGFLKIEIAGSIFPYFANFLPSFTLAGAANLLATS CCCHHEEEEEHHCCCCCCCCCCEEEEEECCCHHHHHHHHCCCHHHHCCHHHHCCC >Mature Secondary Structure MLATSWGSVSLVFVLVSRSISGSSSRGFLKIEIAGSIFPYFANFLPSFTLAGAANLLATS CCCCCCCCHHEEEEEHHCCCCCCCCCCEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHCC WGSVSLVFVLVSRSISGSSYRAFLKIEIAGSIFPYFANFLPSFTLAGAANLLATSWGSVS CCCHHEEEEEHHCCCCCCCEEEEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHH LVFVLVSRSISGSSYRAFLKIEIADSIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVL EEEEEHHCCCCCCCEEEEEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHEEEEE VSRSISGSSSRAFLKIEIAGSIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVLVSRSI HHCCCCCCCCCEEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHEEEEEHHCCC SGSSSRDFLKIEIVCSIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVLGSRSISGSSS CCCCCCCEEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCC RGFLKIEIAGSIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVLVSRSISGSSSRDFLK CCEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHEEEEEHHCCCCCCCCCCEEE IEIVCSIFPYFANFLPSFTLAGAANLLATSWGSVSLVFVLVSRSISGSSSRDFLKIEIVC EEEHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHEEEEEHHCCCCCCCCCCEEEEEEHH FIFPYFANFLPSFTLAGAANLLATSWGSISLVFVLVLRSISGSSSRGFLKIEIAGSIFPY HHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHH FANFLPSFTLAGAENLLATSWGSVSLVFVLVSRSISGSSSRDFLKIEIVCFIFPYFANFL HHHHCCCEECCCCCHHHHCCCCCHHEEEEEHHCCCCCCCCCCEEEEEEHHHHHHHHHHHC PSFTLAGAANLLATSWGSVSLVFVLVSRSISGSSSRDFLKIEIAGSIFPYFANFLPSFTL CCHHHHHHHHHHHCCCCCHHEEEEEHHCCCCCCCCCCEEEEEECCCHHHHHHHHCCCHHH AGAANLLATSWGSVSLVFVLVSRSISGSSSRGFLKIEIAGSIFPYFANFLPSFTLAGAAN HHHHHHHHCCCCCHHEEEEEHHCCCCCCCCCCEEEEEECCCHHHHHHHHCCCHHHHHHHH LLATSWGSVSLVFVLVSRSISGSSSRDFLKIEIAGSIFPYFANFLPSFTLAGAANLLATS HHHCCCCCHHEEEEEHHCCCCCCCCCCEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHCC WGSVSLVFVLVSRSISGSSSRGFLKIEIAGSIFPYFANFLPSFTLAGAANLLATS CCCHHEEEEEHHCCCCCCCCCCEEEEEECCCHHHHHHHHCCCHHHHCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA