Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113474155

Identifier: 113474155

GI number: 113474155

Start: 402783

End: 403595

Strand: Reverse

Name: 113474155

Synonym: Tery_0259

Alternate gene names: NA

Gene position: 403595-402783 (Counterclockwise)

Preceding gene: 113474156

Following gene: 113474152

Centisome position: 5.21

GC content: 31.0

Gene sequence:

>813_bases
ATGGTATTAATTAACTGGCAATACTTAATAGAAGATATTAATTTTAAACATCAAAAATGCCAAGATTACCATAAGAATTC
TATAGCTTATGCTTATTCTTTAGGTCAATTATTATTAGAAACTAAATCTTTATTTTCTCCTACTGAATGGCAATCGTGGC
TACAAAATAATTGCCATTTATCGGAAAACTGTACAGAAACTTATTTACAAATAGCTAAAAGTTGGCCTAGTTTCCGGAGA
CAATTAGATACTTACAGAAAAGTTGATTTATCTGCTATTGAGGATAAATCCCAAATGCAATTTTTTACCTCTAAATCAAA
AGATAATTTACTAGAGAAGCTAGGGAAGGAAGTTAACAAAAATATTCCGTCATTGGATAATACTAATGATTTTACCACTT
GTCCTCCCAAGTCTGAAGAATATAAAAGTTCTACAATAATTAATTTGTATATTCCTGGGAAAATAGTTCCTAAAGCACGT
CCACGAGTTACTGCTAATGGTACTTATTTACCATCTCGGTATCGTATCTGGAGAAATCAGGCAGAAGTAGAAATCTACCG
TCAAGTTTCTAAACTTAATTTAGAGGTAAGTTTGCCAATTCAAAGAGCAGCTATTTCTATTAGTTTTTGTGGGAAACATC
GCACTAATTCTGATTTAGATAATTTAGCAGGAGCTTGTCTTGATGCTTTAACATTAAATGGTGCGGGTGTACTTCAAGAC
GATCGCTTAAGTTGTATTCCTAAGCTTAATATTGAATATATTCCTCATATTAAAAAAATAGGAGTTTGGATTGAAATTAA
AATACTTTCTTAA

Upstream 100 bases:

>100_bases
TATATTTCAACAGAGTATCTCTTTTTCCCTAATACTTACTTTCTGTACCCATATTTTTATTATTTCTCTCCGTTTTTATA
TTTACTTATTTTATACAAAA

Downstream 100 bases:

>100_bases
TTAGAATATGAAATACAATGTAGCACGGGGTTCTGATCTTGGCTACATTGCGTTTTTAGGACTTATGCAGAAAACGGATA
TATCAAGGAAGTTTATTGGT

Product: endodeoxyribonuclease RusA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MVLINWQYLIEDINFKHQKCQDYHKNSIAYAYSLGQLLLETKSLFSPTEWQSWLQNNCHLSENCTETYLQIAKSWPSFRR
QLDTYRKVDLSAIEDKSQMQFFTSKSKDNLLEKLGKEVNKNIPSLDNTNDFTTCPPKSEEYKSSTIINLYIPGKIVPKAR
PRVTANGTYLPSRYRIWRNQAEVEIYRQVSKLNLEVSLPIQRAAISISFCGKHRTNSDLDNLAGACLDALTLNGAGVLQD
DRLSCIPKLNIEYIPHIKKIGVWIEIKILS

Sequences:

>Translated_270_residues
MVLINWQYLIEDINFKHQKCQDYHKNSIAYAYSLGQLLLETKSLFSPTEWQSWLQNNCHLSENCTETYLQIAKSWPSFRR
QLDTYRKVDLSAIEDKSQMQFFTSKSKDNLLEKLGKEVNKNIPSLDNTNDFTTCPPKSEEYKSSTIINLYIPGKIVPKAR
PRVTANGTYLPSRYRIWRNQAEVEIYRQVSKLNLEVSLPIQRAAISISFCGKHRTNSDLDNLAGACLDALTLNGAGVLQD
DRLSCIPKLNIEYIPHIKKIGVWIEIKILS
>Mature_270_residues
MVLINWQYLIEDINFKHQKCQDYHKNSIAYAYSLGQLLLETKSLFSPTEWQSWLQNNCHLSENCTETYLQIAKSWPSFRR
QLDTYRKVDLSAIEDKSQMQFFTSKSKDNLLEKLGKEVNKNIPSLDNTNDFTTCPPKSEEYKSSTIINLYIPGKIVPKAR
PRVTANGTYLPSRYRIWRNQAEVEIYRQVSKLNLEVSLPIQRAAISISFCGKHRTNSDLDNLAGACLDALTLNGAGVLQD
DRLSCIPKLNIEYIPHIKKIGVWIEIKILS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31093; Mature: 31093

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLINWQYLIEDINFKHQKCQDYHKNSIAYAYSLGQLLLETKSLFSPTEWQSWLQNNCHL
CEEEEHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
SENCTETYLQIAKSWPSFRRQLDTYRKVDLSAIEDKSQMQFFTSKSKDNLLEKLGKEVNK
CCHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHC
NIPSLDNTNDFTTCPPKSEEYKSSTIINLYIPGKIVPKARPRVTANGTYLPSRYRIWRNQ
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEECCCCCCCEECCCCCCCHHHHHHHCC
AEVEIYRQVSKLNLEVSLPIQRAAISISFCGKHRTNSDLDNLAGACLDALTLNGAGVLQD
HHHHHHHHHHHHCEEEECCHHHHEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
DRLSCIPKLNIEYIPHIKKIGVWIEIKILS
CCCCCCCCCCCHHCCCHHHCCEEEEEEEEC
>Mature Secondary Structure
MVLINWQYLIEDINFKHQKCQDYHKNSIAYAYSLGQLLLETKSLFSPTEWQSWLQNNCHL
CEEEEHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
SENCTETYLQIAKSWPSFRRQLDTYRKVDLSAIEDKSQMQFFTSKSKDNLLEKLGKEVNK
CCHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHC
NIPSLDNTNDFTTCPPKSEEYKSSTIINLYIPGKIVPKARPRVTANGTYLPSRYRIWRNQ
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEECCCCCCCEECCCCCCCHHHHHHHCC
AEVEIYRQVSKLNLEVSLPIQRAAISISFCGKHRTNSDLDNLAGACLDALTLNGAGVLQD
HHHHHHHHHHHHCEEEECCHHHHEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
DRLSCIPKLNIEYIPHIKKIGVWIEIKILS
CCCCCCCCCCCHHCCCHHHCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA