| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474155
Identifier: 113474155
GI number: 113474155
Start: 402783
End: 403595
Strand: Reverse
Name: 113474155
Synonym: Tery_0259
Alternate gene names: NA
Gene position: 403595-402783 (Counterclockwise)
Preceding gene: 113474156
Following gene: 113474152
Centisome position: 5.21
GC content: 31.0
Gene sequence:
>813_bases ATGGTATTAATTAACTGGCAATACTTAATAGAAGATATTAATTTTAAACATCAAAAATGCCAAGATTACCATAAGAATTC TATAGCTTATGCTTATTCTTTAGGTCAATTATTATTAGAAACTAAATCTTTATTTTCTCCTACTGAATGGCAATCGTGGC TACAAAATAATTGCCATTTATCGGAAAACTGTACAGAAACTTATTTACAAATAGCTAAAAGTTGGCCTAGTTTCCGGAGA CAATTAGATACTTACAGAAAAGTTGATTTATCTGCTATTGAGGATAAATCCCAAATGCAATTTTTTACCTCTAAATCAAA AGATAATTTACTAGAGAAGCTAGGGAAGGAAGTTAACAAAAATATTCCGTCATTGGATAATACTAATGATTTTACCACTT GTCCTCCCAAGTCTGAAGAATATAAAAGTTCTACAATAATTAATTTGTATATTCCTGGGAAAATAGTTCCTAAAGCACGT CCACGAGTTACTGCTAATGGTACTTATTTACCATCTCGGTATCGTATCTGGAGAAATCAGGCAGAAGTAGAAATCTACCG TCAAGTTTCTAAACTTAATTTAGAGGTAAGTTTGCCAATTCAAAGAGCAGCTATTTCTATTAGTTTTTGTGGGAAACATC GCACTAATTCTGATTTAGATAATTTAGCAGGAGCTTGTCTTGATGCTTTAACATTAAATGGTGCGGGTGTACTTCAAGAC GATCGCTTAAGTTGTATTCCTAAGCTTAATATTGAATATATTCCTCATATTAAAAAAATAGGAGTTTGGATTGAAATTAA AATACTTTCTTAA
Upstream 100 bases:
>100_bases TATATTTCAACAGAGTATCTCTTTTTCCCTAATACTTACTTTCTGTACCCATATTTTTATTATTTCTCTCCGTTTTTATA TTTACTTATTTTATACAAAA
Downstream 100 bases:
>100_bases TTAGAATATGAAATACAATGTAGCACGGGGTTCTGATCTTGGCTACATTGCGTTTTTAGGACTTATGCAGAAAACGGATA TATCAAGGAAGTTTATTGGT
Product: endodeoxyribonuclease RusA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 270; Mature: 270
Protein sequence:
>270_residues MVLINWQYLIEDINFKHQKCQDYHKNSIAYAYSLGQLLLETKSLFSPTEWQSWLQNNCHLSENCTETYLQIAKSWPSFRR QLDTYRKVDLSAIEDKSQMQFFTSKSKDNLLEKLGKEVNKNIPSLDNTNDFTTCPPKSEEYKSSTIINLYIPGKIVPKAR PRVTANGTYLPSRYRIWRNQAEVEIYRQVSKLNLEVSLPIQRAAISISFCGKHRTNSDLDNLAGACLDALTLNGAGVLQD DRLSCIPKLNIEYIPHIKKIGVWIEIKILS
Sequences:
>Translated_270_residues MVLINWQYLIEDINFKHQKCQDYHKNSIAYAYSLGQLLLETKSLFSPTEWQSWLQNNCHLSENCTETYLQIAKSWPSFRR QLDTYRKVDLSAIEDKSQMQFFTSKSKDNLLEKLGKEVNKNIPSLDNTNDFTTCPPKSEEYKSSTIINLYIPGKIVPKAR PRVTANGTYLPSRYRIWRNQAEVEIYRQVSKLNLEVSLPIQRAAISISFCGKHRTNSDLDNLAGACLDALTLNGAGVLQD DRLSCIPKLNIEYIPHIKKIGVWIEIKILS >Mature_270_residues MVLINWQYLIEDINFKHQKCQDYHKNSIAYAYSLGQLLLETKSLFSPTEWQSWLQNNCHLSENCTETYLQIAKSWPSFRR QLDTYRKVDLSAIEDKSQMQFFTSKSKDNLLEKLGKEVNKNIPSLDNTNDFTTCPPKSEEYKSSTIINLYIPGKIVPKAR PRVTANGTYLPSRYRIWRNQAEVEIYRQVSKLNLEVSLPIQRAAISISFCGKHRTNSDLDNLAGACLDALTLNGAGVLQD DRLSCIPKLNIEYIPHIKKIGVWIEIKILS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31093; Mature: 31093
Theoretical pI: Translated: 8.79; Mature: 8.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVLINWQYLIEDINFKHQKCQDYHKNSIAYAYSLGQLLLETKSLFSPTEWQSWLQNNCHL CEEEEHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC SENCTETYLQIAKSWPSFRRQLDTYRKVDLSAIEDKSQMQFFTSKSKDNLLEKLGKEVNK CCHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHC NIPSLDNTNDFTTCPPKSEEYKSSTIINLYIPGKIVPKARPRVTANGTYLPSRYRIWRNQ CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEECCCCCCCEECCCCCCCHHHHHHHCC AEVEIYRQVSKLNLEVSLPIQRAAISISFCGKHRTNSDLDNLAGACLDALTLNGAGVLQD HHHHHHHHHHHHCEEEECCHHHHEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC DRLSCIPKLNIEYIPHIKKIGVWIEIKILS CCCCCCCCCCCHHCCCHHHCCEEEEEEEEC >Mature Secondary Structure MVLINWQYLIEDINFKHQKCQDYHKNSIAYAYSLGQLLLETKSLFSPTEWQSWLQNNCHL CEEEEHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC SENCTETYLQIAKSWPSFRRQLDTYRKVDLSAIEDKSQMQFFTSKSKDNLLEKLGKEVNK CCHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHC NIPSLDNTNDFTTCPPKSEEYKSSTIINLYIPGKIVPKARPRVTANGTYLPSRYRIWRNQ CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEECCCCCCCEECCCCCCCHHHHHHHCC AEVEIYRQVSKLNLEVSLPIQRAAISISFCGKHRTNSDLDNLAGACLDALTLNGAGVLQD HHHHHHHHHHHHCEEEECCHHHHEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC DRLSCIPKLNIEYIPHIKKIGVWIEIKILS CCCCCCCCCCCHHCCCHHHCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA