| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474152
Identifier: 113474152
GI number: 113474152
Start: 399270
End: 400796
Strand: Reverse
Name: 113474152
Synonym: Tery_0256
Alternate gene names: NA
Gene position: 400796-399270 (Counterclockwise)
Preceding gene: 113474155
Following gene: 113474150
Centisome position: 5.17
GC content: 29.27
Gene sequence:
>1527_bases ATGACTTTTCGTAGAAATCTATTTACTCATCTTTTTCCATATATATTATTATTTATAATAACGGCGATCGCTCTCTACAT TACTAAACCAGTCTCTCTACAAATTCGCTGGAATGATGAAACACTTTACTATACTGTAGCTCAAAATATTGTCCGTCATT TTGATTTTAATAGTAATCATTATTTGGCTAGTAGTATTATTCAAAAAGGCTATCCAACTAAGGATACTCATCTCCCTGGT TATCCCATCATATTGGCCTTTGGTTTTTTGATTGGTGGAATTAATGAGGCTACACCATTTTTTGTTAATTATCTACTCCT TATTTTGACGATTTTTTTAATTTTTACAGTTGGCAGATTAATTGCGAATCAATGGGTGGGCTTTGGGGCTAGTTTGATTT ATTTGGTTTATCCTTATACTTTAGTTTTGACTCATTCAGTCATGACAGAAATATCGGCTGCCGCTGTTATTATGGTAGTT GTTGCTATTTTGTTTCTACAAAAAGAAAGTTTTTTAAAAGGGCTATTTTTAGGTTTAGCAATAGCTTTAGCATATTTAAT TAAACCATTTTTATTGACTTTGTTTATTACCAGTACTACTCTTTTGTGGATTGAGAAAAGTAAACATTACAAAAAAACTT TATTAAGCTTACTTTTTTCTTTTGGATTACTGTTTGTTACTGTTTTAATTCCCCTTTCTCAAAATCAAGAAATTTATCCC TATGCAGCAACGAGAATTTTATCCCAATCTAATTTGACTGATATGCTGAGAATGATCTGGGAAAACTTTCTATTTAATTG TACTCTCGTAATTAATTTTAAAAGGTTTCCAGTCTATGGAACAATTACTATTTCAATGTTTCTGTTATGGAGTATTACTT TAGCTGTACTAGCAACAGCAAGTCATCAAAAAAAATTACAAAAATGGGAAAAATATACACATTTATGTGTTTTTAGTTTA ATTAATTTTATGTCAGCTTTACTAGCATTTTTATTACTTTATCAATATATTAATGCAACAAGAGGGTTATCAGTTTTTTC TCCATTAATGGCAATTTTATCTGTGACTAGTTTGTGGCTATTGATACCACAATTAAAAATCCAAAAAGTAGTAGCTAGTG GATTAGGAATTTGTCTTTGTTTAAGTTATTCAAACTTTGTGACTTTTCACAAACTAAAAAATCTCCAACGGCGACAGTAT CAACGTTTATATACTTATAGTTCACGGTTGGAAAAAGTAATATTAAAATTATCAATTCAACCACAAGTAGTTATGTCTAA TAAAAACTTTTATTTAGCGATCGCTAATTATCCGACTCAAGTTATTTGGCAATTACCTCAAACATTACAAGAGCTACAGC AAGTTGACAAAGAAGTAAGTATAGATCTAATAGAGTTAAAAGATTCTGATCCAATATTTCAAGAAAATTTGCAAGTTTAT GGTAATATCAATCTATTAGATAACCGTTATATTTTGCAATACCAAAATCAGGGTTTTTATTACTATTTACAAAAACATAA ACTATAG
Upstream 100 bases:
>100_bases AATCTGTAATTCTCAAGTATTAACCTGCTTACCCCAAAGCTAAGTTATATTATTTACCTATTCTTACTTTGTTTATAGTT TCTTTCTTCTAACTTCAAAA
Downstream 100 bases:
>100_bases ATTAACTATAGAAAAAAAAGCTTTATATAATCTGAAAAATATTATTAAATCAGGGTTTTAATGATATCAGCATAGAAGAA AAAAAATAACATTTTTGATG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 508; Mature: 507
Protein sequence:
>508_residues MTFRRNLFTHLFPYILLFIITAIALYITKPVSLQIRWNDETLYYTVAQNIVRHFDFNSNHYLASSIIQKGYPTKDTHLPG YPIILAFGFLIGGINEATPFFVNYLLLILTIFLIFTVGRLIANQWVGFGASLIYLVYPYTLVLTHSVMTEISAAAVIMVV VAILFLQKESFLKGLFLGLAIALAYLIKPFLLTLFITSTTLLWIEKSKHYKKTLLSLLFSFGLLFVTVLIPLSQNQEIYP YAATRILSQSNLTDMLRMIWENFLFNCTLVINFKRFPVYGTITISMFLLWSITLAVLATASHQKKLQKWEKYTHLCVFSL INFMSALLAFLLLYQYINATRGLSVFSPLMAILSVTSLWLLIPQLKIQKVVASGLGICLCLSYSNFVTFHKLKNLQRRQY QRLYTYSSRLEKVILKLSIQPQVVMSNKNFYLAIANYPTQVIWQLPQTLQELQQVDKEVSIDLIELKDSDPIFQENLQVY GNINLLDNRYILQYQNQGFYYYLQKHKL
Sequences:
>Translated_508_residues MTFRRNLFTHLFPYILLFIITAIALYITKPVSLQIRWNDETLYYTVAQNIVRHFDFNSNHYLASSIIQKGYPTKDTHLPG YPIILAFGFLIGGINEATPFFVNYLLLILTIFLIFTVGRLIANQWVGFGASLIYLVYPYTLVLTHSVMTEISAAAVIMVV VAILFLQKESFLKGLFLGLAIALAYLIKPFLLTLFITSTTLLWIEKSKHYKKTLLSLLFSFGLLFVTVLIPLSQNQEIYP YAATRILSQSNLTDMLRMIWENFLFNCTLVINFKRFPVYGTITISMFLLWSITLAVLATASHQKKLQKWEKYTHLCVFSL INFMSALLAFLLLYQYINATRGLSVFSPLMAILSVTSLWLLIPQLKIQKVVASGLGICLCLSYSNFVTFHKLKNLQRRQY QRLYTYSSRLEKVILKLSIQPQVVMSNKNFYLAIANYPTQVIWQLPQTLQELQQVDKEVSIDLIELKDSDPIFQENLQVY GNINLLDNRYILQYQNQGFYYYLQKHKL >Mature_507_residues TFRRNLFTHLFPYILLFIITAIALYITKPVSLQIRWNDETLYYTVAQNIVRHFDFNSNHYLASSIIQKGYPTKDTHLPGY PIILAFGFLIGGINEATPFFVNYLLLILTIFLIFTVGRLIANQWVGFGASLIYLVYPYTLVLTHSVMTEISAAAVIMVVV AILFLQKESFLKGLFLGLAIALAYLIKPFLLTLFITSTTLLWIEKSKHYKKTLLSLLFSFGLLFVTVLIPLSQNQEIYPY AATRILSQSNLTDMLRMIWENFLFNCTLVINFKRFPVYGTITISMFLLWSITLAVLATASHQKKLQKWEKYTHLCVFSLI NFMSALLAFLLLYQYINATRGLSVFSPLMAILSVTSLWLLIPQLKIQKVVASGLGICLCLSYSNFVTFHKLKNLQRRQYQ RLYTYSSRLEKVILKLSIQPQVVMSNKNFYLAIANYPTQVIWQLPQTLQELQQVDKEVSIDLIELKDSDPIFQENLQVYG NINLLDNRYILQYQNQGFYYYLQKHKL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58814; Mature: 58682
Theoretical pI: Translated: 9.82; Mature: 9.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFRRNLFTHLFPYILLFIITAIALYITKPVSLQIRWNDETLYYTVAQNIVRHFDFNSNH CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEHHHHHHHHHHCCCCCCC YLASSIIQKGYPTKDTHLPGYPIILAFGFLIGGINEATPFFVNYLLLILTIFLIFTVGRL HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH IANQWVGFGASLIYLVYPYTLVLTHSVMTEISAAAVIMVVVAILFLQKESFLKGLFLGLA HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IALAYLIKPFLLTLFITSTTLLWIEKSKHYKKTLLSLLFSFGLLFVTVLIPLSQNQEIYP HHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH YAATRILSQSNLTDMLRMIWENFLFNCTLVINFKRFPVYGTITISMFLLWSITLAVLATA HHHHHHHHHCCHHHHHHHHHHHHHEEEEEEEEEEECCEEEHHHHHHHHHHHHHHHHHHHH SHQKKLQKWEKYTHLCVFSLINFMSALLAFLLLYQYINATRGLSVFSPLMAILSVTSLWL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH LIPQLKIQKVVASGLGICLCLSYSNFVTFHKLKNLQRRQYQRLYTYSSRLEKVILKLSIQ HHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PQVVMSNKNFYLAIANYPTQVIWQLPQTLQELQQVDKEVSIDLIELKDSDPIFQENLQVY CEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCHHHCCCCEE GNINLLDNRYILQYQNQGFYYYLQKHKL EEEEEECCEEEEEEECCCEEEEEEECCC >Mature Secondary Structure TFRRNLFTHLFPYILLFIITAIALYITKPVSLQIRWNDETLYYTVAQNIVRHFDFNSNH CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEHHHHHHHHHHCCCCCCC YLASSIIQKGYPTKDTHLPGYPIILAFGFLIGGINEATPFFVNYLLLILTIFLIFTVGRL HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH IANQWVGFGASLIYLVYPYTLVLTHSVMTEISAAAVIMVVVAILFLQKESFLKGLFLGLA HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IALAYLIKPFLLTLFITSTTLLWIEKSKHYKKTLLSLLFSFGLLFVTVLIPLSQNQEIYP HHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH YAATRILSQSNLTDMLRMIWENFLFNCTLVINFKRFPVYGTITISMFLLWSITLAVLATA HHHHHHHHHCCHHHHHHHHHHHHHEEEEEEEEEEECCEEEHHHHHHHHHHHHHHHHHHHH SHQKKLQKWEKYTHLCVFSLINFMSALLAFLLLYQYINATRGLSVFSPLMAILSVTSLWL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH LIPQLKIQKVVASGLGICLCLSYSNFVTFHKLKNLQRRQYQRLYTYSSRLEKVILKLSIQ HHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PQVVMSNKNFYLAIANYPTQVIWQLPQTLQELQQVDKEVSIDLIELKDSDPIFQENLQVY CEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCHHHCCCCEE GNINLLDNRYILQYQNQGFYYYLQKHKL EEEEEECCEEEEEEECCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA