| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113474141
Identifier: 113474141
GI number: 113474141
Start: 380511
End: 381323
Strand: Reverse
Name: 113474141
Synonym: Tery_0243
Alternate gene names: NA
Gene position: 381323-380511 (Counterclockwise)
Preceding gene: 113474145
Following gene: 113474140
Centisome position: 4.92
GC content: 30.87
Gene sequence:
>813_bases ATGAAGAATCATACAGATAAGTATCAAGAAAAATTTCTAGAGCCAAATAAAGAAGATGGTATCTTAGAAAAACTTCCTCA AGAAGTGAAGGAATGGGCAGCTAGCTTACCTTGGCATCAACGTCGTTATGTTTTATCATTTTCCTATATTTTGTGTGCTT CTTCTCCTGAGAAACAAGCAGAATTTTTAGATGATTATATAGCAGATGGTTTAGCAATAAAAATGCTACAAGATATAGAT ACAGTTAACAGAGTTAACAAATATCTTAGACATTTTCATGCCAGAACAAAAATCAATGAACACGTACTTCGAAGGTACAT TAGATTATACTATTTTCATGTAACTCAGAATGTACATATTCAAACTCAACAGTATTTAGAGTCTGCCATGAAGCTAGTCA TGAATACAGAAAAAAGAAATCAAATATTCAACTACATATTAGGATTTGAGTTCATTAAAATTATGTTCACAATGAGTTGG ATACAACACGAGAGACTAGCTCGGCTTCAGACAAATCAAGAAACCTTTATTAATACATATATAAAGCCTATTCAATCTGC CCATCAAGTTAATAGTATTATAGTACCTAAAGATAAAAGTATATTTTTTGCTAAAAGAGATTACTATGTACAAATACCTG AGATATCCCCTAAAAAATTAGTAAAGTTAATCATAGAAACTTTTACTTCTGAGAAAGTTAATAAATGTGGTTTCATCATC ACTCGCCACGTGAAAGGTTTACGATTTGACTTTGATTACATCTTTCAACAGCAAGAACAAGAAGACATTTTTCCAGTGAA TTTCAATCTATAG
Upstream 100 bases:
>100_bases ACTATGACTTGTGACAAGAAAATTATTTTCATGTGATCCTTAACACAAAAAGTAATAAGACATATTATATCAATATTTAT ACTAATTAAAAAGGATACCA
Downstream 100 bases:
>100_bases TTAATTAGAATATAGAATACAGTCATTATTTAATTATAATTTTAATAAAACTAACTTAATTTTAAAATCAAGTCCAAGCC ATAAAGTCAAAAGTTTTATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 270; Mature: 270
Protein sequence:
>270_residues MKNHTDKYQEKFLEPNKEDGILEKLPQEVKEWAASLPWHQRRYVLSFSYILCASSPEKQAEFLDDYIADGLAIKMLQDID TVNRVNKYLRHFHARTKINEHVLRRYIRLYYFHVTQNVHIQTQQYLESAMKLVMNTEKRNQIFNYILGFEFIKIMFTMSW IQHERLARLQTNQETFINTYIKPIQSAHQVNSIIVPKDKSIFFAKRDYYVQIPEISPKKLVKLIIETFTSEKVNKCGFII TRHVKGLRFDFDYIFQQQEQEDIFPVNFNL
Sequences:
>Translated_270_residues MKNHTDKYQEKFLEPNKEDGILEKLPQEVKEWAASLPWHQRRYVLSFSYILCASSPEKQAEFLDDYIADGLAIKMLQDID TVNRVNKYLRHFHARTKINEHVLRRYIRLYYFHVTQNVHIQTQQYLESAMKLVMNTEKRNQIFNYILGFEFIKIMFTMSW IQHERLARLQTNQETFINTYIKPIQSAHQVNSIIVPKDKSIFFAKRDYYVQIPEISPKKLVKLIIETFTSEKVNKCGFII TRHVKGLRFDFDYIFQQQEQEDIFPVNFNL >Mature_270_residues MKNHTDKYQEKFLEPNKEDGILEKLPQEVKEWAASLPWHQRRYVLSFSYILCASSPEKQAEFLDDYIADGLAIKMLQDID TVNRVNKYLRHFHARTKINEHVLRRYIRLYYFHVTQNVHIQTQQYLESAMKLVMNTEKRNQIFNYILGFEFIKIMFTMSW IQHERLARLQTNQETFINTYIKPIQSAHQVNSIIVPKDKSIFFAKRDYYVQIPEISPKKLVKLIIETFTSEKVNKCGFII TRHVKGLRFDFDYIFQQQEQEDIFPVNFNL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32485; Mature: 32485
Theoretical pI: Translated: 9.42; Mature: 9.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNHTDKYQEKFLEPNKEDGILEKLPQEVKEWAASLPWHQRRYVLSFSYILCASSPEKQA CCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHEEHHHHEECCCCHHHH EFLDDYIADGLAIKMLQDIDTVNRVNKYLRHFHARTKINEHVLRRYIRLYYFHVTQNVHI HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE QTQQYLESAMKLVMNTEKRNQIFNYILGFEFIKIMFTMSWIQHERLARLQTNQETFINTY HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH IKPIQSAHQVNSIIVPKDKSIFFAKRDYYVQIPEISPKKLVKLIIETFTSEKVNKCGFII HHHHHHHHHHCCEEECCCCCEEEEECCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH TRHVKGLRFDFDYIFQQQEQEDIFPVNFNL HHHHCCCEECHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MKNHTDKYQEKFLEPNKEDGILEKLPQEVKEWAASLPWHQRRYVLSFSYILCASSPEKQA CCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHEEHHHHEECCCCHHHH EFLDDYIADGLAIKMLQDIDTVNRVNKYLRHFHARTKINEHVLRRYIRLYYFHVTQNVHI HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE QTQQYLESAMKLVMNTEKRNQIFNYILGFEFIKIMFTMSWIQHERLARLQTNQETFINTY HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH IKPIQSAHQVNSIIVPKDKSIFFAKRDYYVQIPEISPKKLVKLIIETFTSEKVNKCGFII HHHHHHHHHHCCEEECCCCCEEEEECCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH TRHVKGLRFDFDYIFQQQEQEDIFPVNFNL HHHHCCCEECHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA