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The map label for this gene is ykfC [H]

Identifier: 113474139

GI number: 113474139

Start: 375832

End: 377736

Strand: Reverse

Name: ykfC [H]

Synonym: Tery_0240

Alternate gene names: 113474139

Gene position: 377736-375832 (Counterclockwise)

Preceding gene: 113474140

Following gene: 113474137

Centisome position: 4.87

GC content: 39.0

Gene sequence:

>1905_bases
ATGAACAAAGCTAAAACCCTAAAAAGAAATTTAGAAAATCCTAAACCATTTTTAAGCGTAGCATGGGATACAAACGATAT
ACCGGACCTATGTAGTGTCAATCCTAATCTTAAATGGAAGGACATCAACTGGAAGAAGGTAGAAAAATATGTATTTAAGT
TGCAAAAGTTAATTTACAGAGCATCCAGCCGTGGCGAAATCCGCAAAATGCGTAAATACCAAAAACTTCTGACCAAAAGT
TATTATGCAAGGTTGCTAGCTGTTAGGCGTGTGACTCAGGACAACCAGGGAAAGAAAACTGCTGGTATAGATGGTATAAA
AAGCCTTCCCCCAATGCAGAGGTTGAACCTGGTAGAAATGTTAAAGTCACAATATCTTAAAGCAAGCCCAACCCGTAGAG
TCTGGATACCAAAACCAGGTAGAGAAGAAAAACGCCCATTAGGCATACCTACTATGTATGATAGGGCACTTCAAGCACTG
GTAAAGTTAGGTAGGTCACCAGAATGGGAAGCACTTTTTGAGCCTAACAGTTATGGTCTTTTCCGGAGGTCAGCACATGA
TGCTATTGCAGCAATCTATGTCAGTATTAACCAAAAACCAAAATATGTATTAGATGCTGACATATCCAAATGTTTCGACC
GAATTAACCATGATGCACTATTGAGAAAAATAGGGCGAACACCTTACAGACGATTAATCAAACAATGGTTAAAATCTGGA
GTATTCGACAATAAACAATTCTCAAACACTGTGGAAGGTACACCACAGGGAGGGGTTATCTCACCCTTACTAGCAAACAT
CGCCTTACACGGTATGGAAAAATGCTTAGAAGATTACGCCGAAACTCTTTCAGGGAGTAAACGTGATAATAAACATGCAT
TGTCCCTAATACGTTACGCTGATGACTTTGTAATCCTACACAAAGACATCAAAATATTGTTACAAGCAAAAACCGTAATA
CAGGAATGGTTAAACCAGGTAGGATTAGAACTAAAACCAGAAAAAACCAGAATTGCCCACACTTTGGAAGAATATGAAGG
TAACAAACCTGGATTTGACTTCCTAGGATTCACAATAAGGCAATGGAAATTCAAGACAACCAAACAAGGATTTAAGACAC
TGATAAAACCGTCCTCTAAGAGTATAAAAACTCATTATCGGAGGCTAGCGGATATATGTGATAACCACAAAACTGCTCCT
AAAAAAGCTTTAATAGCTAAACTTAATCCGATAATTAGAGGATGGGCCAACTACTTTTCCACTGTAGTCAGTAAAGAAAC
CTTTTCAAAGTTAGACCACCTAGTTTGGAAAAGGATAGGTCGATGGGCAAGTAGACGGCATCCAAACAAGTCAGCCAAAT
GGGTCAAGAGTAAGTATTTCCCTCGCTGCAAAGTCACCAGAAACTGGTTACTTAACGACGACGAATATATACTTAACCGG
CACTCAGACGTTGCTATAGTAAGACACGTCAAGGTAAAAGGTAATAAATCCCCATTAGACGGTGATTGGACTTATTGGAG
CAGTAGAATTGGTAAACATCCAGGCATAAGGAAAGAAGTCACAACGCTGTTAAAGCGACAAAAGAACAAATGCGCATTTT
GTGGACTAACTTTCAGATCAAACGACCTCATGGAAATTGACCATATAAAACCAATATCTGAAGGCGGTGATAACACAGTT
AAAAATAAACAACTGTTACACCTACATTGCCACGATACTAAAACTGCTTTAGATAATATAACATACACAAGACCCAAGTT
ACAGGACTTACCTGATAAATACCTGTGGGTGAATGATATGTTAATTCTAAAACAAGGATGTACCTATGAAAAAGGACGTT
TAGGAGAGGAGCCGGATGAGGTGAAAGTCTCACGTCCGGTTTTGAAGACGAGTCGGGTAAGGTAA

Upstream 100 bases:

>100_bases
ACACGAAATTAGTAGGTCTTAAGGAGAGTAGGATTGAGTAAGAAGCATTGCAGATGCAGACTTACTCACTGTTAGACGTA
ATGTAAAGTAATGACTAGCT

Downstream 100 bases:

>100_bases
CTTACCTGGCGAATGTTTAACAATACAGCTTCATTTATATAGTATTTTTGAGTGATATAACTCTTGTCAATCAGAGTTTT
CTATAATTTGCTCTGCTGTT

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 634; Mature: 634

Protein sequence:

>634_residues
MNKAKTLKRNLENPKPFLSVAWDTNDIPDLCSVNPNLKWKDINWKKVEKYVFKLQKLIYRASSRGEIRKMRKYQKLLTKS
YYARLLAVRRVTQDNQGKKTAGIDGIKSLPPMQRLNLVEMLKSQYLKASPTRRVWIPKPGREEKRPLGIPTMYDRALQAL
VKLGRSPEWEALFEPNSYGLFRRSAHDAIAAIYVSINQKPKYVLDADISKCFDRINHDALLRKIGRTPYRRLIKQWLKSG
VFDNKQFSNTVEGTPQGGVISPLLANIALHGMEKCLEDYAETLSGSKRDNKHALSLIRYADDFVILHKDIKILLQAKTVI
QEWLNQVGLELKPEKTRIAHTLEEYEGNKPGFDFLGFTIRQWKFKTTKQGFKTLIKPSSKSIKTHYRRLADICDNHKTAP
KKALIAKLNPIIRGWANYFSTVVSKETFSKLDHLVWKRIGRWASRRHPNKSAKWVKSKYFPRCKVTRNWLLNDDEYILNR
HSDVAIVRHVKVKGNKSPLDGDWTYWSSRIGKHPGIRKEVTTLLKRQKNKCAFCGLTFRSNDLMEIDHIKPISEGGDNTV
KNKQLLHLHCHDTKTALDNITYTRPKLQDLPDKYLWVNDMLILKQGCTYEKGRLGEEPDEVKVSRPVLKTSRVR

Sequences:

>Translated_634_residues
MNKAKTLKRNLENPKPFLSVAWDTNDIPDLCSVNPNLKWKDINWKKVEKYVFKLQKLIYRASSRGEIRKMRKYQKLLTKS
YYARLLAVRRVTQDNQGKKTAGIDGIKSLPPMQRLNLVEMLKSQYLKASPTRRVWIPKPGREEKRPLGIPTMYDRALQAL
VKLGRSPEWEALFEPNSYGLFRRSAHDAIAAIYVSINQKPKYVLDADISKCFDRINHDALLRKIGRTPYRRLIKQWLKSG
VFDNKQFSNTVEGTPQGGVISPLLANIALHGMEKCLEDYAETLSGSKRDNKHALSLIRYADDFVILHKDIKILLQAKTVI
QEWLNQVGLELKPEKTRIAHTLEEYEGNKPGFDFLGFTIRQWKFKTTKQGFKTLIKPSSKSIKTHYRRLADICDNHKTAP
KKALIAKLNPIIRGWANYFSTVVSKETFSKLDHLVWKRIGRWASRRHPNKSAKWVKSKYFPRCKVTRNWLLNDDEYILNR
HSDVAIVRHVKVKGNKSPLDGDWTYWSSRIGKHPGIRKEVTTLLKRQKNKCAFCGLTFRSNDLMEIDHIKPISEGGDNTV
KNKQLLHLHCHDTKTALDNITYTRPKLQDLPDKYLWVNDMLILKQGCTYEKGRLGEEPDEVKVSRPVLKTSRVR
>Mature_634_residues
MNKAKTLKRNLENPKPFLSVAWDTNDIPDLCSVNPNLKWKDINWKKVEKYVFKLQKLIYRASSRGEIRKMRKYQKLLTKS
YYARLLAVRRVTQDNQGKKTAGIDGIKSLPPMQRLNLVEMLKSQYLKASPTRRVWIPKPGREEKRPLGIPTMYDRALQAL
VKLGRSPEWEALFEPNSYGLFRRSAHDAIAAIYVSINQKPKYVLDADISKCFDRINHDALLRKIGRTPYRRLIKQWLKSG
VFDNKQFSNTVEGTPQGGVISPLLANIALHGMEKCLEDYAETLSGSKRDNKHALSLIRYADDFVILHKDIKILLQAKTVI
QEWLNQVGLELKPEKTRIAHTLEEYEGNKPGFDFLGFTIRQWKFKTTKQGFKTLIKPSSKSIKTHYRRLADICDNHKTAP
KKALIAKLNPIIRGWANYFSTVVSKETFSKLDHLVWKRIGRWASRRHPNKSAKWVKSKYFPRCKVTRNWLLNDDEYILNR
HSDVAIVRHVKVKGNKSPLDGDWTYWSSRIGKHPGIRKEVTTLLKRQKNKCAFCGLTFRSNDLMEIDHIKPISEGGDNTV
KNKQLLHLHCHDTKTALDNITYTRPKLQDLPDKYLWVNDMLILKQGCTYEKGRLGEEPDEVKVSRPVLKTSRVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=374, Percent_Identity=25.668449197861, Blast_Score=82, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6226520, Length=331, Percent_Identity=25.6797583081571, Blast_Score=79, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 73578; Mature: 73578

Theoretical pI: Translated: 10.63; Mature: 10.63

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKAKTLKRNLENPKPFLSVAWDTNDIPDLCSVNPNLKWKDINWKKVEKYVFKLQKLIYR
CCHHHHHHHHCCCCCCCEEEEECCCCCCHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHH
ASSRGEIRKMRKYQKLLTKSYYARLLAVRRVTQDNQGKKTAGIDGIKSLPPMQRLNLVEM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCHHHHHHHHH
LKSQYLKASPTRRVWIPKPGREEKRPLGIPTMYDRALQALVKLGRSPEWEALFEPNSYGL
HHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCH
FRRSAHDAIAAIYVSINQKPKYVLDADISKCFDRINHDALLRKIGRTPYRRLIKQWLKSG
HHHHHHHHEEEEEEEECCCCCEEEECHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHCC
VFDNKQFSNTVEGTPQGGVISPLLANIALHGMEKCLEDYAETLSGSKRDNKHALSLIRYA
CCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
DDFVILHKDIKILLQAKTVIQEWLNQVGLELKPEKTRIAHTLEEYEGNKPGFDFLGFTIR
CCEEEEHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHCCCCCCCHHHHHHHH
QWKFKTTKQGFKTLIKPSSKSIKTHYRRLADICDNHKTAPKKALIAKLNPIIRGWANYFS
HHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
TVVSKETFSKLDHLVWKRIGRWASRRHPNKSAKWVKSKYFPRCKVTRNWLLNDDEYILNR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHCCCCCCCHHHHCC
HSDVAIVRHVKVKGNKSPLDGDWTYWSSRIGKHPGIRKEVTTLLKRQKNKCAFCGLTFRS
CCCEEEEEEEEECCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEEECC
NDLMEIDHIKPISEGGDNTVKNKQLLHLHCHDTKTALDNITYTRPKLQDLPDKYLWVNDM
CCCEECCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCHHHHCCCHHEEHHCC
LILKQGCTYEKGRLGEEPDEVKVSRPVLKTSRVR
CEECCCCCCCCCCCCCCCCHHHHHCCHHHHCCCC
>Mature Secondary Structure
MNKAKTLKRNLENPKPFLSVAWDTNDIPDLCSVNPNLKWKDINWKKVEKYVFKLQKLIYR
CCHHHHHHHHCCCCCCCEEEEECCCCCCHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHH
ASSRGEIRKMRKYQKLLTKSYYARLLAVRRVTQDNQGKKTAGIDGIKSLPPMQRLNLVEM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCHHHHHHHHH
LKSQYLKASPTRRVWIPKPGREEKRPLGIPTMYDRALQALVKLGRSPEWEALFEPNSYGL
HHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCH
FRRSAHDAIAAIYVSINQKPKYVLDADISKCFDRINHDALLRKIGRTPYRRLIKQWLKSG
HHHHHHHHEEEEEEEECCCCCEEEECHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHCC
VFDNKQFSNTVEGTPQGGVISPLLANIALHGMEKCLEDYAETLSGSKRDNKHALSLIRYA
CCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
DDFVILHKDIKILLQAKTVIQEWLNQVGLELKPEKTRIAHTLEEYEGNKPGFDFLGFTIR
CCEEEEHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHCCCCCCCHHHHHHHH
QWKFKTTKQGFKTLIKPSSKSIKTHYRRLADICDNHKTAPKKALIAKLNPIIRGWANYFS
HHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
TVVSKETFSKLDHLVWKRIGRWASRRHPNKSAKWVKSKYFPRCKVTRNWLLNDDEYILNR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHCCCCCCCHHHHCC
HSDVAIVRHVKVKGNKSPLDGDWTYWSSRIGKHPGIRKEVTTLLKRQKNKCAFCGLTFRS
CCCEEEEEEEEECCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEEECC
NDLMEIDHIKPISEGGDNTVKNKQLLHLHCHDTKTALDNITYTRPKLQDLPDKYLWVNDM
CCCEECCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCHHHHCCCHHEEHHCC
LILKQGCTYEKGRLGEEPDEVKVSRPVLKTSRVR
CEECCCCCCCCCCCCCCCCHHHHHCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]