Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113474011

Identifier: 113474011

GI number: 113474011

Start: 130201

End: 130701

Strand: Direct

Name: 113474011

Synonym: Tery_0094

Alternate gene names: NA

Gene position: 130201-130701 (Clockwise)

Preceding gene: 113474010

Following gene: 113474012

Centisome position: 1.68

GC content: 35.13

Gene sequence:

>501_bases
ATGACAATGAAACCAAATCCAATTCCACCCCAACCAGGCCAAGAATCAGTTTGGGATTATCCTCGTCCAGCTCGTTTAGA
AGATACAAATAAATCTATTCGAGTGATTTTTAATAATGTAGTTTTGGCAGAAACAAATAAAGCAAAAAGAGTATTAGAAA
CTAGTCATCCTCCTAGTTATTATATTCCTCCTGAAGATGTTAAAAGAGAGTATTTAATTCCTAATCCCAGGAAAACTTTT
TGTGAGTGGAAAGGTTACGCTTCCTATTACGATATTTCAGTAGAGGATAAGTATGTTAATTATCCAGTCTGGCAATATTT
GGAGCCAACCCCTGATTTTCTACCTATAAAAGGATATTATAGTTTTTATGCTAATTTAATGGATGCTTGTTATGTTAATG
ATGAGTTAGTAAAGGCTCAATCTGGTAATCTTTACGGAGGATGGATTACCTCTGATATTGTCGGACCATTTAAAGGGGAA
CCTGGTACAAGATGGTGGTAA

Upstream 100 bases:

>100_bases
TATCATGATTTTCATCTATCTTTTATTTTATATTTACTAAAAATTACAAATTTTGTTTGCTATAAAGTCTGAAATTTTGA
TTTTTTAACTGATAACTGAA

Downstream 100 bases:

>100_bases
ATAATTGATAATGAAAAGGAGAGAAATTCTGTTAAAATAAAAGTAATTAAAGAAGTTTTTCGGGTGAATTTATTTGATGA
TGAAGATTTATTGTGGATAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MTMKPNPIPPQPGQESVWDYPRPARLEDTNKSIRVIFNNVVLAETNKAKRVLETSHPPSYYIPPEDVKREYLIPNPRKTF
CEWKGYASYYDISVEDKYVNYPVWQYLEPTPDFLPIKGYYSFYANLMDACYVNDELVKAQSGNLYGGWITSDIVGPFKGE
PGTRWW

Sequences:

>Translated_166_residues
MTMKPNPIPPQPGQESVWDYPRPARLEDTNKSIRVIFNNVVLAETNKAKRVLETSHPPSYYIPPEDVKREYLIPNPRKTF
CEWKGYASYYDISVEDKYVNYPVWQYLEPTPDFLPIKGYYSFYANLMDACYVNDELVKAQSGNLYGGWITSDIVGPFKGE
PGTRWW
>Mature_165_residues
TMKPNPIPPQPGQESVWDYPRPARLEDTNKSIRVIFNNVVLAETNKAKRVLETSHPPSYYIPPEDVKREYLIPNPRKTFC
EWKGYASYYDISVEDKYVNYPVWQYLEPTPDFLPIKGYYSFYANLMDACYVNDELVKAQSGNLYGGWITSDIVGPFKGEP
GTRWW

Specific function: Unknown

COG id: COG2343

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19344; Mature: 19213

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMKPNPIPPQPGQESVWDYPRPARLEDTNKSIRVIFNNVVLAETNKAKRVLETSHPPSY
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCHHHHHHCCCCCCC
YIPPEDVKREYLIPNPRKTFCEWKGYASYYDISVEDKYVNYPVWQYLEPTPDFLPIKGYY
CCCHHHHCCCCCCCCCCHHHHCCCCCCEEEEEEECCCEECCCHHCCCCCCCCEEECHHHH
SFYANLMDACYVNDELVKAQSGNLYGGWITSDIVGPFKGEPGTRWW
HHHHHHHHHHHCCCHHEEECCCCEECCEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TMKPNPIPPQPGQESVWDYPRPARLEDTNKSIRVIFNNVVLAETNKAKRVLETSHPPSY
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCHHHHHHCCCCCCC
YIPPEDVKREYLIPNPRKTFCEWKGYASYYDISVEDKYVNYPVWQYLEPTPDFLPIKGYY
CCCHHHHCCCCCCCCCCHHHHCCCCCCEEEEEEECCCEECCCHHCCCCCCCCEEECHHHH
SFYANLMDACYVNDELVKAQSGNLYGGWITSDIVGPFKGEPGTRWW
HHHHHHHHHHHCCCHHEEECCCCEECCEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA