| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113473965
Identifier: 113473965
GI number: 113473965
Start: 55816
End: 56544
Strand: Direct
Name: 113473965
Synonym: Tery_0033
Alternate gene names: NA
Gene position: 55816-56544 (Clockwise)
Preceding gene: 113473964
Following gene: 113473968
Centisome position: 0.72
GC content: 34.57
Gene sequence:
>729_bases ATGGTAAAACTATTGAACAAAATACTAAATCTGGAGAAGCTCCCAACTTTAATAGTATCTCTACTATTACTAATTTTGGC AACTATAATACCAGTATCCTCTGTATCTGCAACTGGAGTTTATCAAATGCCCAATTTAGACACAGGTAATCGTACATTTA TTGTTGATGATGCAGATGTTCTCAGTCGAGTTACTAAGAATAAACTAAACAATACTTTAGAAAATTTGGCTAATTTGACT GGGAATGAAGTTAGATTCGTTACTATCCGTCGCCTAGATTATGGTGAGACTGCCGATAGTTTTACTGAAAAATTATTTGA CAAATGGTTCCCTACTCTAGAAGCAAAAGCTAATCAAACCTTAGTAGTATTAGATACTCTCACCAATAATGATGCAATTC GTATAGGTGATGCAGTTAAAATATTTATGTCTAATGATATTACTCAGAGTTTAGTTAATGAAACTATTCAAGTACCTATT AGAGATGGTAATAAATATAATGAAGCTTTCTTGGCAGCTAGCGATCGCCTAACTGCTGTATTATCTGGAGAACCAGATCC AGGTCCTCCGGATATTAAAGATGAGCTTTCAGCACAAGTAGCAGCTACTTTTAAATCAGCAGAGGAAACTAATGATCAAA GTGCAACTGTTTTGGTTGTTGTATTGTTAGTTATTGCTACAGTTGTACCTATGGCTACTTATTTCTGGTATCAAAGCTTT TCTGGCTAG
Upstream 100 bases:
>100_bases GTAAAGTTTCTATATTTTTATAGACTATGGACTGTGGCAATGAGAAAGCTATCATTCCATAAAAAAATAAACGTTTTACG AAAAACTGCAAATTATTCTG
Downstream 100 bases:
>100_bases TAATTCAAGAAAATAGCAAAAGGTTTCATTTATACATAATTTCTGTAAATTGAGTTAATCTTGAATATATTCTTTACCAC TTAATAAAGCAATTTCAGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 242; Mature: 242
Protein sequence:
>242_residues MVKLLNKILNLEKLPTLIVSLLLLILATIIPVSSVSATGVYQMPNLDTGNRTFIVDDADVLSRVTKNKLNNTLENLANLT GNEVRFVTIRRLDYGETADSFTEKLFDKWFPTLEAKANQTLVVLDTLTNNDAIRIGDAVKIFMSNDITQSLVNETIQVPI RDGNKYNEAFLAASDRLTAVLSGEPDPGPPDIKDELSAQVAATFKSAEETNDQSATVLVVVLLVIATVVPMATYFWYQSF SG
Sequences:
>Translated_242_residues MVKLLNKILNLEKLPTLIVSLLLLILATIIPVSSVSATGVYQMPNLDTGNRTFIVDDADVLSRVTKNKLNNTLENLANLT GNEVRFVTIRRLDYGETADSFTEKLFDKWFPTLEAKANQTLVVLDTLTNNDAIRIGDAVKIFMSNDITQSLVNETIQVPI RDGNKYNEAFLAASDRLTAVLSGEPDPGPPDIKDELSAQVAATFKSAEETNDQSATVLVVVLLVIATVVPMATYFWYQSF SG >Mature_242_residues MVKLLNKILNLEKLPTLIVSLLLLILATIIPVSSVSATGVYQMPNLDTGNRTFIVDDADVLSRVTKNKLNNTLENLANLT GNEVRFVTIRRLDYGETADSFTEKLFDKWFPTLEAKANQTLVVLDTLTNNDAIRIGDAVKIFMSNDITQSLVNETIQVPI RDGNKYNEAFLAASDRLTAVLSGEPDPGPPDIKDELSAQVAATFKSAEETNDQSATVLVVVLLVIATVVPMATYFWYQSF SG
Specific function: Unknown
COG id: COG1512
COG function: function code R; Beta-propeller domains of methanol dehydrogenase type
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26570; Mature: 26570
Theoretical pI: Translated: 4.34; Mature: 4.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVKLLNKILNLEKLPTLIVSLLLLILATIIPVSSVSATGVYQMPNLDTGNRTFIVDDADV CHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCEEEEEECHHH LSRVTKNKLNNTLENLANLTGNEVRFVTIRRLDYGETADSFTEKLFDKWFPTLEAKANQT HHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCHHCCCCCE LVVLDTLTNNDAIRIGDAVKIFMSNDITQSLVNETIQVPIRDGNKYNEAFLAASDRLTAV EEEEEECCCCCEEEECCEEEEECCCHHHHHHHHHHEEEEECCCCCHHHHHHHHCCCEEEE LSGEPDPGPPDIKDELSAQVAATFKSAEETNDQSATVLVVVLLVIATVVPMATYFWYQSF ECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC SG CC >Mature Secondary Structure MVKLLNKILNLEKLPTLIVSLLLLILATIIPVSSVSATGVYQMPNLDTGNRTFIVDDADV CHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCEEEEEECHHH LSRVTKNKLNNTLENLANLTGNEVRFVTIRRLDYGETADSFTEKLFDKWFPTLEAKANQT HHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCHHCCCCCE LVVLDTLTNNDAIRIGDAVKIFMSNDITQSLVNETIQVPIRDGNKYNEAFLAASDRLTAV EEEEEECCCCCEEEECCEEEEECCCHHHHHHHHHHEEEEECCCCCHHHHHHHHCCCEEEE LSGEPDPGPPDIKDELSAQVAATFKSAEETNDQSATVLVVVLLVIATVVPMATYFWYQSF ECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC SG CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA