| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113473963
Identifier: 113473963
GI number: 113473963
Start: 48918
End: 49433
Strand: Direct
Name: 113473963
Synonym: Tery_0028
Alternate gene names: NA
Gene position: 48918-49433 (Clockwise)
Preceding gene: 113473961
Following gene: 113473964
Centisome position: 0.63
GC content: 40.12
Gene sequence:
>516_bases ATGACTATCTCATTTGTAAGTACAACAAAAGCTGCTTTTTTACTGAATATATCTACAGGTAGATTAAGAACTCTACTAAA TCAAGATCGTGTTCGAGGTGCTCGTAAAGCCAAAAGGCTTTGGCAAATTCCGCTTAACTATCGAGGAATGCCAGAAATTA AACCAGGTCGTCGTGGTCCTCAAGGAACTTGGAATAAATTTCAACGCCAAGCTAAGACTATCATCCATGTTCTGCGAAAG ACTATAGACTATAACCGAGACAATGGAACCTCTTATCCAGCAGTAGCGGTGAAAGTAGGAAATAAAAAAGATTATTGCCA CGCTTTAAAAATTGATGGTTCTTGCCAAATAATTTATCAGCCCCATCAACCCAATAAAAGTCAAGCCGGAGGTGCCCGTC TGTGGATTGAAGTGGAACCGGAAAATATAGTAGAACGAGTATACTTCAGTGATGGAGATTATGGTCCGCCACCAGAAGTT CTTCAGCAGCGAGCCAGAAGTAAAGAGAAAAAATAA
Upstream 100 bases:
>100_bases TATGAATAACAAAGTCCAATTAGAATATTATTTTTAACAATTTTTAACAACTACTTGAATTTACTAAAAGAAAATATTCA ATAACTCAGACGTTATAGTT
Downstream 100 bases:
>100_bases AACATGAAAGATTATAGCAATTGAAGCAAAGGTTAAAACCTCAACTTAACAACATAATCAACTCTATTTCTAAAATCTCC TATTGTTTCTTCTGACTTTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 171; Mature: 170
Protein sequence:
>171_residues MTISFVSTTKAAFLLNISTGRLRTLLNQDRVRGARKAKRLWQIPLNYRGMPEIKPGRRGPQGTWNKFQRQAKTIIHVLRK TIDYNRDNGTSYPAVAVKVGNKKDYCHALKIDGSCQIIYQPHQPNKSQAGGARLWIEVEPENIVERVYFSDGDYGPPPEV LQQRARSKEKK
Sequences:
>Translated_171_residues MTISFVSTTKAAFLLNISTGRLRTLLNQDRVRGARKAKRLWQIPLNYRGMPEIKPGRRGPQGTWNKFQRQAKTIIHVLRK TIDYNRDNGTSYPAVAVKVGNKKDYCHALKIDGSCQIIYQPHQPNKSQAGGARLWIEVEPENIVERVYFSDGDYGPPPEV LQQRARSKEKK >Mature_170_residues TISFVSTTKAAFLLNISTGRLRTLLNQDRVRGARKAKRLWQIPLNYRGMPEIKPGRRGPQGTWNKFQRQAKTIIHVLRKT IDYNRDNGTSYPAVAVKVGNKKDYCHALKIDGSCQIIYQPHQPNKSQAGGARLWIEVEPENIVERVYFSDGDYGPPPEVL QQRARSKEKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19548; Mature: 19417
Theoretical pI: Translated: 10.83; Mature: 10.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTISFVSTTKAAFLLNISTGRLRTLLNQDRVRGARKAKRLWQIPLNYRGMPEIKPGRRGP CEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCC QGTWNKFQRQAKTIIHVLRKTIDYNRDNGTSYPAVAVKVGNKKDYCHALKIDGSCQIIYQ CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCEEEEEC PHQPNKSQAGGARLWIEVEPENIVERVYFSDGDYGPPPEVLQQRARSKEKK CCCCCCCCCCCEEEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC >Mature Secondary Structure TISFVSTTKAAFLLNISTGRLRTLLNQDRVRGARKAKRLWQIPLNYRGMPEIKPGRRGP EEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCC QGTWNKFQRQAKTIIHVLRKTIDYNRDNGTSYPAVAVKVGNKKDYCHALKIDGSCQIIYQ CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCEEEEEC PHQPNKSQAGGARLWIEVEPENIVERVYFSDGDYGPPPEVLQQRARSKEKK CCCCCCCCCCCEEEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA