| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113473948
Identifier: 113473948
GI number: 113473948
Start: 12895
End: 15912
Strand: Direct
Name: 113473948
Synonym: Tery_0011
Alternate gene names: NA
Gene position: 12895-15912 (Clockwise)
Preceding gene: 113473946
Following gene: 113473949
Centisome position: 0.17
GC content: 28.23
Gene sequence:
>3018_bases ATGGCAAATGAATTAAGAGAAGGTGACAAAACTCCTGTTGACTATAGTAGTTTATTAAAACAGATTTTAAATGAATTACC AACAATGAATCCATTTAAAGTATCTAGTAATAAGAAAATTTTAGAAATAAATATTGATGATATAGCTGCTTGTATTGCTA AGACAAAAGTTGAAAATCCTATCAGTAATACTATATCTGTTCGTTCTGCCACAGTAAATTTTGCTAGTGAAAAAAGTTTT TCGGAAAAAATTCAAGAAATAAAAGGTTGTCTAGAAACTCATTTCAGTTCGGCTTTACAAGGAGAAAATTTAGTTTATTT TATTGAAGGTTTAACTACTAATTTAGAATCTTTTCAGGGACAAGCAAATAAGTTAGGTTTGTCTTATCCTTTTAATGAAG AATATAAAGGACTACAAACAAAAGAATTAATTTTAGATTCTAATAAAAATGGCAGTGATTCTATACTGAGGTTTGCTAAA CTAACAATTACAGTAGAGAATACTAAAAAGTTTATATCTCAGCTAGAAACAGGAATTAAAAATCATATATCTGATTCTTT TGAAACTGATAATCAAGGAGAAATGGAAGGTGCTTTAGATATTTTAAATAGTCAGATAAACGAAGAATCATCAAATTTTA ATTTATTGCAAAAACTGGTGGATCAAGAAACTCTAGGAAAACTGAAAAGAGAAGCAATTATTACCTATTTAAAATATATT GAGCAAAATGTTGACAGCAAATATAAAAATACTAAAGGTTTTATTTATCTACAGGATTTAATTCGGCGACTAAAATTAAT AGAAGAATATCTAGACGAGCAAACTGATGATTTTGAAGTTTACTACGCTGGAGTAACTGTTAATTATAAAGATGTTTTTG CTCGTGGGGAAGCCTTTGATGCTCTCCCAATTATTCCTATTATTGAAGGCAATTTAGGGGAAAGTAGAGATAAAGAAGTA GGAAAAGTTCAGTTTACATTAGGTTTAAAACTTAAGTTGAATGGCAAGGTACAAAAAGATAGAGGTAAAACTTCTTTTGA GTATAATTTAGATATTATTAACCCGGAGAATTCTGAGCATAAAGCAAAACTAGCTGATCCGGATATTCAAAGTCGAGAAA GTTTTGCTAAGAAGGTATTAATTAGAGTGTTTTTATACTATTTTATATTTGCCTGTGATCCTCCTTCATTAATGAATGAT GAACTTCTTTATAACCCTAGGCTTAAGTTCGAGCAGGTTTTAATTGATTTAAAAAGTAGTAAGCATGATGATGAAAAAAG GAAAATTTTCCGGGGCATAGTCAAAGGTTTTAGTGAATATCGTGTTCAAGAAAAAGTTAATAGTCTATGTCAATTTTTAA TCAATTTTATCAACAAAAAGAAAAGGTTGCCAGTATATCATGAAAATCAGGTAATTAGTATTAGTAGAGAAATCCTAAAT AAGGACTTAGATAGTATTTCTATAGGAGATTTTTTTCAGGAAGATTGGAGAGAAGGAAAGAAAATTCTTAAATATATTTT CATTGATAAGCCTGGGGTAAATTCTTATACTCTATGTCAAATACCAGTTATTATCAAAATAGAAGATATTCGATATTTTC AAGGAGATAGTAATCCAAAAGAATTCAAGTTTGAATATGACATTCAAGGAATGAAAACATTACCTATGTTTTGGATACCT AATACTAACCCTTGTTTAGATAATTATAAAGCTTATTTTGAGAAAGAATACAAACACATATTATTTTATTATGATAATAA ACGCTTAAATCAAGATAGACAAAACCAAGAACATTTCAATTCTACACAAATATTTCTTTATCGTTTTACTTGGATATTAT TGTCTTATCTTTGTTTATATATTCTTCTTGAGGAATGTAGTGAAGAGACGAAGGAATTATTATTTATCCCTATGGTTAGA CTACATGAGGGAACGCCGGCAAATCCATTTCATACTGAAAAATTTTTAGCTGATCTTTCCAAATTATTATGTCATATATT CAACCAAAAATATCTATGTAATTCTCAAGGGTTCCGGGTAGAAATGAATAAAAGACCTAAAAATTTTCAGATTAGAAATG GCTTAAACTCTCTATATTCTGTATTATCTAAAAAGTTTACCTTAACAGATACTTCTAAATTTTTAAACCTGGAAAAATTA GCAATTATTATTGTATCAAGTCGAGAAAGTGATGCCAAAAAAAATAATAAAAATTCTAATGATAGGATCATAACTTTAAT AGGAGAAGTTATAGGTATTGAAAAACTCGAAGATGGCAGTGTAAAAATTCAACCATTAATAACTTTTGATAATAATTATT ATCTCAGAAAGATGTACGAAAAGCCACCGATTTTAAATGAAACTGTAAAAGACCTTTATGTTCAGGGATACCAAAATTTT TTATATGTTGCTCAAGCAACTTACACTAGTACTTTACATATTACTCAACAAGAACAAGATGAGAAACTATATTTTATGTC GCCTACTATTATTAAAGATATGAAGCAAGGTCAGAAAAATATTAAAATATATCCAGTATTTTATGATAAATATTATGTAC ATCCTTTTAAAAGTTTGGATAGCCATTCTTTTTATATCCAAGACACTAAACAGTTAATGAATATTTCTGAAGATAGTAGT CAAGAAGCGGTTGTATTTTTCAATCTGTTTAATGGTATTTTAGTGGGAAATAACGAACGATTTTATAATGGGGTGATTTC ATATTCGACTTTGTTAGGAAAATTTTATCCTGGAGTTATGGATGATGCTGATATTCGAGAAGCTTTAGTTTTAGACTCTC AGCTTAAAAATGACATTTTACAATATCTGACGTTTTTCCACTTTTCACGATTTGAAAGACAAACCAAAGTTAGTTTAAAG TTAGACCCATACGAAAATATTATTGGTGATAAATCAGTAGGTGCTTTATCTATATTTCCTCACCTTACAGAAAACATAAA TTTTAATGCATTAGCTTTTTTAATAGAGGTTAATAAAGTAGTAGATGTATATTTTTAA
Upstream 100 bases:
>100_bases ATGATAATAGATAGATTACAAATCTATATTTATGGGTATCATAAATGTGCAGATAACTATGGGAATTGGGATAAAAAATT AAATTAATTGGTTAAAAAAT
Downstream 100 bases:
>100_bases AGGAAGAAAAAAATGAAGATGACATATCAGTTAGGATTTTGATTGGTGGTAGGTTTTAATATTGCCATTCTTGTAAATAT TAAATTCCACGAATTTACAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 1005; Mature: 1004
Protein sequence:
>1005_residues MANELREGDKTPVDYSSLLKQILNELPTMNPFKVSSNKKILEINIDDIAACIAKTKVENPISNTISVRSATVNFASEKSF SEKIQEIKGCLETHFSSALQGENLVYFIEGLTTNLESFQGQANKLGLSYPFNEEYKGLQTKELILDSNKNGSDSILRFAK LTITVENTKKFISQLETGIKNHISDSFETDNQGEMEGALDILNSQINEESSNFNLLQKLVDQETLGKLKREAIITYLKYI EQNVDSKYKNTKGFIYLQDLIRRLKLIEEYLDEQTDDFEVYYAGVTVNYKDVFARGEAFDALPIIPIIEGNLGESRDKEV GKVQFTLGLKLKLNGKVQKDRGKTSFEYNLDIINPENSEHKAKLADPDIQSRESFAKKVLIRVFLYYFIFACDPPSLMND ELLYNPRLKFEQVLIDLKSSKHDDEKRKIFRGIVKGFSEYRVQEKVNSLCQFLINFINKKKRLPVYHENQVISISREILN KDLDSISIGDFFQEDWREGKKILKYIFIDKPGVNSYTLCQIPVIIKIEDIRYFQGDSNPKEFKFEYDIQGMKTLPMFWIP NTNPCLDNYKAYFEKEYKHILFYYDNKRLNQDRQNQEHFNSTQIFLYRFTWILLSYLCLYILLEECSEETKELLFIPMVR LHEGTPANPFHTEKFLADLSKLLCHIFNQKYLCNSQGFRVEMNKRPKNFQIRNGLNSLYSVLSKKFTLTDTSKFLNLEKL AIIIVSSRESDAKKNNKNSNDRIITLIGEVIGIEKLEDGSVKIQPLITFDNNYYLRKMYEKPPILNETVKDLYVQGYQNF LYVAQATYTSTLHITQQEQDEKLYFMSPTIIKDMKQGQKNIKIYPVFYDKYYVHPFKSLDSHSFYIQDTKQLMNISEDSS QEAVVFFNLFNGILVGNNERFYNGVISYSTLLGKFYPGVMDDADIREALVLDSQLKNDILQYLTFFHFSRFERQTKVSLK LDPYENIIGDKSVGALSIFPHLTENINFNALAFLIEVNKVVDVYF
Sequences:
>Translated_1005_residues MANELREGDKTPVDYSSLLKQILNELPTMNPFKVSSNKKILEINIDDIAACIAKTKVENPISNTISVRSATVNFASEKSF SEKIQEIKGCLETHFSSALQGENLVYFIEGLTTNLESFQGQANKLGLSYPFNEEYKGLQTKELILDSNKNGSDSILRFAK LTITVENTKKFISQLETGIKNHISDSFETDNQGEMEGALDILNSQINEESSNFNLLQKLVDQETLGKLKREAIITYLKYI EQNVDSKYKNTKGFIYLQDLIRRLKLIEEYLDEQTDDFEVYYAGVTVNYKDVFARGEAFDALPIIPIIEGNLGESRDKEV GKVQFTLGLKLKLNGKVQKDRGKTSFEYNLDIINPENSEHKAKLADPDIQSRESFAKKVLIRVFLYYFIFACDPPSLMND ELLYNPRLKFEQVLIDLKSSKHDDEKRKIFRGIVKGFSEYRVQEKVNSLCQFLINFINKKKRLPVYHENQVISISREILN KDLDSISIGDFFQEDWREGKKILKYIFIDKPGVNSYTLCQIPVIIKIEDIRYFQGDSNPKEFKFEYDIQGMKTLPMFWIP NTNPCLDNYKAYFEKEYKHILFYYDNKRLNQDRQNQEHFNSTQIFLYRFTWILLSYLCLYILLEECSEETKELLFIPMVR LHEGTPANPFHTEKFLADLSKLLCHIFNQKYLCNSQGFRVEMNKRPKNFQIRNGLNSLYSVLSKKFTLTDTSKFLNLEKL AIIIVSSRESDAKKNNKNSNDRIITLIGEVIGIEKLEDGSVKIQPLITFDNNYYLRKMYEKPPILNETVKDLYVQGYQNF LYVAQATYTSTLHITQQEQDEKLYFMSPTIIKDMKQGQKNIKIYPVFYDKYYVHPFKSLDSHSFYIQDTKQLMNISEDSS QEAVVFFNLFNGILVGNNERFYNGVISYSTLLGKFYPGVMDDADIREALVLDSQLKNDILQYLTFFHFSRFERQTKVSLK LDPYENIIGDKSVGALSIFPHLTENINFNALAFLIEVNKVVDVYF >Mature_1004_residues ANELREGDKTPVDYSSLLKQILNELPTMNPFKVSSNKKILEINIDDIAACIAKTKVENPISNTISVRSATVNFASEKSFS EKIQEIKGCLETHFSSALQGENLVYFIEGLTTNLESFQGQANKLGLSYPFNEEYKGLQTKELILDSNKNGSDSILRFAKL TITVENTKKFISQLETGIKNHISDSFETDNQGEMEGALDILNSQINEESSNFNLLQKLVDQETLGKLKREAIITYLKYIE QNVDSKYKNTKGFIYLQDLIRRLKLIEEYLDEQTDDFEVYYAGVTVNYKDVFARGEAFDALPIIPIIEGNLGESRDKEVG KVQFTLGLKLKLNGKVQKDRGKTSFEYNLDIINPENSEHKAKLADPDIQSRESFAKKVLIRVFLYYFIFACDPPSLMNDE LLYNPRLKFEQVLIDLKSSKHDDEKRKIFRGIVKGFSEYRVQEKVNSLCQFLINFINKKKRLPVYHENQVISISREILNK DLDSISIGDFFQEDWREGKKILKYIFIDKPGVNSYTLCQIPVIIKIEDIRYFQGDSNPKEFKFEYDIQGMKTLPMFWIPN TNPCLDNYKAYFEKEYKHILFYYDNKRLNQDRQNQEHFNSTQIFLYRFTWILLSYLCLYILLEECSEETKELLFIPMVRL HEGTPANPFHTEKFLADLSKLLCHIFNQKYLCNSQGFRVEMNKRPKNFQIRNGLNSLYSVLSKKFTLTDTSKFLNLEKLA IIIVSSRESDAKKNNKNSNDRIITLIGEVIGIEKLEDGSVKIQPLITFDNNYYLRKMYEKPPILNETVKDLYVQGYQNFL YVAQATYTSTLHITQQEQDEKLYFMSPTIIKDMKQGQKNIKIYPVFYDKYYVHPFKSLDSHSFYIQDTKQLMNISEDSSQ EAVVFFNLFNGILVGNNERFYNGVISYSTLLGKFYPGVMDDADIREALVLDSQLKNDILQYLTFFHFSRFERQTKVSLKL DPYENIIGDKSVGALSIFPHLTENINFNALAFLIEVNKVVDVYF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 116850; Mature: 116719
Theoretical pI: Translated: 6.28; Mature: 6.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANELREGDKTPVDYSSLLKQILNELPTMNPFKVSSNKKILEINIDDIAACIAKTKVENP CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCEEEEEEHHHHHHHHHHHHCCCC ISNTISVRSATVNFASEKSFSEKIQEIKGCLETHFSSALQGENLVYFIEGLTTNLESFQG CCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCCHHHHCC QANKLGLSYPFNEEYKGLQTKELILDSNKNGSDSILRFAKLTITVENTKKFISQLETGIK CHHCCCCCCCCCHHHCCCCHHHHEEECCCCCHHHHEEEEEEEEEEHHHHHHHHHHHHHHH NHISDSFETDNQGEMEGALDILNSQINEESSNFNLLQKLVDQETLGKLKREAIITYLKYI HHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHH EQNVDSKYKNTKGFIYLQDLIRRLKLIEEYLDEQTDDFEVYYAGVTVNYKDVFARGEAFD HHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEHHHHHHCCCCCC ALPIIPIIEGNLGESRDKEVGKVQFTLGLKLKLNGKVQKDRGKTSFEYNLDIINPENSEH CCCEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCEEECCCCCCEEEEEEEEECCCCCCC KAKLADPDIQSRESFAKKVLIRVFLYYFIFACDPPSLMNDELLYNPRLKFEQVLIDLKSS CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHCC KHDDEKRKIFRGIVKGFSEYRVQEKVNSLCQFLINFINKKKRLPVYHENQVISISREILN CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHH KDLDSISIGDFFQEDWREGKKILKYIFIDKPGVNSYTLCQIPVIIKIEDIRYFQGDSNPK CCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEEEEEEEEEEEEECCCCCCC EFKFEYDIQGMKTLPMFWIPNTNPCLDNYKAYFEKEYKHILFYYDNKRLNQDRQNQEHFN CEEEEEECCCCEECCEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHCC STQIFLYRFTWILLSYLCLYILLEECSEETKELLFIPMVRLHEGTPANPFHTEKFLADLS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHEEHHEECCCCCCCCCHHHHHHHHHH KLLCHIFNQKYLCNSQGFRVEMNKRPKNFQIRNGLNSLYSVLSKKFTLTDTSKFLNLEKL HHHHHHHCCCEEECCCCCEEEECCCCCCEEHHHHHHHHHHHHHCCEEEECHHHHCCEEEE AIIIVSSRESDAKKNNKNSNDRIITLIGEVIGIEKLEDGSVKIQPLITFDNNYYLRKMYE EEEEEECCCCCHHHCCCCCCCEEEEEEHHHHCCEEECCCCEEEEEEEEECCCCEEHHHHC KPPILNETVKDLYVQGYQNFLYVAQATYTSTLHITQQEQDEKLYFMSPTIIKDMKQGQKN CCCCHHHHHHHHHHHCCHHEEEEEEEEEEEEEEEECCCCCCEEEEECCHHHHHHHCCCCC IKIYPVFYDKYYVHPFKSLDSHSFYIQDTKQLMNISEDSSQEAVVFFNLFNGILVGNNER EEEEEEEECCEEECCCCCCCCCCEEEECHHHHHCCCCCCCCCEEEEEEECCCEEECCCCH FYNGVISYSTLLGKFYPGVMDDADIREALVLDSQLKNDILQYLTFFHFSRFERQTKVSLK HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEE LDPYENIIGDKSVGALSIFPHLTENINFNALAFLIEVNKVVDVYF ECCHHHHCCCCCCCEEEECHHHHCCCCCCCEEEEEEHHHHHEECC >Mature Secondary Structure ANELREGDKTPVDYSSLLKQILNELPTMNPFKVSSNKKILEINIDDIAACIAKTKVENP CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCEEEEEEHHHHHHHHHHHHCCCC ISNTISVRSATVNFASEKSFSEKIQEIKGCLETHFSSALQGENLVYFIEGLTTNLESFQG CCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCCHHHHCC QANKLGLSYPFNEEYKGLQTKELILDSNKNGSDSILRFAKLTITVENTKKFISQLETGIK CHHCCCCCCCCCHHHCCCCHHHHEEECCCCCHHHHEEEEEEEEEEHHHHHHHHHHHHHHH NHISDSFETDNQGEMEGALDILNSQINEESSNFNLLQKLVDQETLGKLKREAIITYLKYI HHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHH EQNVDSKYKNTKGFIYLQDLIRRLKLIEEYLDEQTDDFEVYYAGVTVNYKDVFARGEAFD HHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEHHHHHHCCCCCC ALPIIPIIEGNLGESRDKEVGKVQFTLGLKLKLNGKVQKDRGKTSFEYNLDIINPENSEH CCCEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCEEECCCCCCEEEEEEEEECCCCCCC KAKLADPDIQSRESFAKKVLIRVFLYYFIFACDPPSLMNDELLYNPRLKFEQVLIDLKSS CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHCC KHDDEKRKIFRGIVKGFSEYRVQEKVNSLCQFLINFINKKKRLPVYHENQVISISREILN CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHH KDLDSISIGDFFQEDWREGKKILKYIFIDKPGVNSYTLCQIPVIIKIEDIRYFQGDSNPK CCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEEEEEEEEEEEEECCCCCCC EFKFEYDIQGMKTLPMFWIPNTNPCLDNYKAYFEKEYKHILFYYDNKRLNQDRQNQEHFN CEEEEEECCCCEECCEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHCC STQIFLYRFTWILLSYLCLYILLEECSEETKELLFIPMVRLHEGTPANPFHTEKFLADLS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHEEHHEECCCCCCCCCHHHHHHHHHH KLLCHIFNQKYLCNSQGFRVEMNKRPKNFQIRNGLNSLYSVLSKKFTLTDTSKFLNLEKL HHHHHHHCCCEEECCCCCEEEECCCCCCEEHHHHHHHHHHHHHCCEEEECHHHHCCEEEE AIIIVSSRESDAKKNNKNSNDRIITLIGEVIGIEKLEDGSVKIQPLITFDNNYYLRKMYE EEEEEECCCCCHHHCCCCCCCEEEEEEHHHHCCEEECCCCEEEEEEEEECCCCEEHHHHC KPPILNETVKDLYVQGYQNFLYVAQATYTSTLHITQQEQDEKLYFMSPTIIKDMKQGQKN CCCCHHHHHHHHHHHCCHHEEEEEEEEEEEEEEEECCCCCCEEEEECCHHHHHHHCCCCC IKIYPVFYDKYYVHPFKSLDSHSFYIQDTKQLMNISEDSSQEAVVFFNLFNGILVGNNER EEEEEEEECCEEECCCCCCCCCCEEEECHHHHHCCCCCCCCCEEEEEEECCCEEECCCCH FYNGVISYSTLLGKFYPGVMDDADIREALVLDSQLKNDILQYLTFFHFSRFERQTKVSLK HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEE LDPYENIIGDKSVGALSIFPHLTENINFNALAFLIEVNKVVDVYF ECCHHHHCCCCCCCEEEECHHHHCCCCCCCEEEEEEHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA