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The map label for this gene is rnpA

Identifier: 110835615

GI number: 110835615

Start: 3119096

End: 3119461

Strand: Reverse

Name: rnpA

Synonym: ABO_2754

Alternate gene names: 110835615

Gene position: 3119461-3119096 (Counterclockwise)

Preceding gene: 110835616

Following gene: 110835614

Centisome position: 99.98

GC content: 51.09

Gene sequence:

>366_bases
GTGCCAATCTCACAGGCCTTTACCCGCCAACATCGCCTGCTTACTGGGCCCCAATATCAAACCGTCTTTGACCAACCCGA
GTGGAAGGTTGGTTTAGGTGGCTATTTGCTATTGGTAACCCGAAATTCCCAACCGCATCCTAGACTAGGTTTGGTAATAG
GCCGAAAACGCGTCAAACGCGCCGTAGATCGTGCGAGAATCAAACGACGAGTACGCGAACAGTTCCGCTGCCGACAGCAG
GAATTGGCCGGTTTGGACATTATTCTTCTGGTTCGTGGTCGGATTGAAAACCCGAATCCAAACCAAGTGACCCTCGATAT
TACTCGGCTATTTGACAAGCTGCTTGCTAAGTGCCGGCAAGCTTGA

Upstream 100 bases:

>100_bases
AAAATGGCCGTAAAATCTTGGCCGCTCGTCGTGCCAAGGGCCGTAAACGGTTGGCTGCATAAGCCAACCGTTTCACCTTG
CTTTCCTGGCTGAGGTAACA

Downstream 100 bases:

>100_bases
GAAACTGCGGCCCGTTTTTCATGCCACAGATAAGCCTCCTATGGAAATCCAGCGCGCCTTAGTTATTACCGGCATTGCCG
TTGTTTCATACCTGATGATT

Product: ribonuclease P, protein component

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 121; Mature: 120

Protein sequence:

>121_residues
MPISQAFTRQHRLLTGPQYQTVFDQPEWKVGLGGYLLLVTRNSQPHPRLGLVIGRKRVKRAVDRARIKRRVREQFRCRQQ
ELAGLDIILLVRGRIENPNPNQVTLDITRLFDKLLAKCRQA

Sequences:

>Translated_121_residues
MPISQAFTRQHRLLTGPQYQTVFDQPEWKVGLGGYLLLVTRNSQPHPRLGLVIGRKRVKRAVDRARIKRRVREQFRCRQQ
ELAGLDIILLVRGRIENPNPNQVTLDITRLFDKLLAKCRQA
>Mature_120_residues
PISQAFTRQHRLLTGPQYQTVFDQPEWKVGLGGYLLLVTRNSQPHPRLGLVIGRKRVKRAVDRARIKRRVREQFRCRQQE
LAGLDIILLVRGRIENPNPNQVTLDITRLFDKLLAKCRQA

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

Organism=Escherichia coli, GI1790139, Length=119, Percent_Identity=36.1344537815126, Blast_Score=73, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_ALCBS (Q0VKU6)

Other databases:

- EMBL:   AM286690
- RefSeq:   YP_694474.1
- ProteinModelPortal:   Q0VKU6
- SMR:   Q0VKU6
- STRING:   Q0VKU6
- GeneID:   4212169
- GenomeReviews:   AM286690_GR
- KEGG:   abo:ABO_2754
- eggNOG:   COG0594
- HOGENOM:   HBG728160
- OMA:   PISQAFT
- PhylomeDB:   Q0VKU6
- BioCyc:   ABOR393595:ABO_2754-MONOMER
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- Gene3D:   G3DSA:3.30.230.10
- ProDom:   PD003629
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 14108; Mature: 13977

Theoretical pI: Translated: 12.01; Mature: 12.01

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPISQAFTRQHRLLTGPQYQTVFDQPEWKVGLGGYLLLVTRNSQPHPRLGLVIGRKRVKR
CCCCHHHHHHHHCCCCCCCCCCCCCCCCEECCCEEEEEEECCCCCCCCCHHHHHHHHHHH
AVDRARIKRRVREQFRCRQQELAGLDIILLVRGRIENPNPNQVTLDITRLFDKLLAKCRQ
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEHHHHHHHHHHHHHC
A
C
>Mature Secondary Structure 
PISQAFTRQHRLLTGPQYQTVFDQPEWKVGLGGYLLLVTRNSQPHPRLGLVIGRKRVKR
CCCHHHHHHHHCCCCCCCCCCCCCCCCEECCCEEEEEEECCCCCCCCCHHHHHHHHHHH
AVDRARIKRRVREQFRCRQQELAGLDIILLVRGRIENPNPNQVTLDITRLFDKLLAKCRQ
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEHHHHHHHHHHHHHC
A
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA