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The map label for this gene is atpD

Identifier: 110835587

GI number: 110835587

Start: 3083303

End: 3084685

Strand: Reverse

Name: atpD

Synonym: ABO_2726

Alternate gene names: 110835587

Gene position: 3084685-3083303 (Counterclockwise)

Preceding gene: 110835588

Following gene: 110835586

Centisome position: 98.86

GC content: 53.8

Gene sequence:

>1383_bases
ATGAGTAGCGGTCGTATTGTTCAGATCATCGGTGCCGTGATCGACGTGGAATTTCCACGCGAAGCCGTACCGAAGGTATA
TGACGCCCTCTCCGTGGACGGTACTGAAACTACCCTGGAAGTTCAGCAGCAGCTGGGCGACGGTGTAGTGCGGACTATTG
CCATGGGCTCCACCGAAGGTCTGAAGCGCGGCCTTGGCGTGACTGATAACGGTGAACCGATTCAGGTTCCTGTGGGCACC
AAAACCTTGGGCCGTATCATGGACGTGCTGGGTCGCCCGATTGATGAAGCGGGCCCCATCGGTGAAGAAGAGCGTATGCC
GATTCACCGTGCAGCGCCTACTTATGCGGATCAGGCAGCCACTAACGAACTGCTGGAAACCGGCATCAAGGTAATCGACC
TGGTTTGTCCTTTCGCCAAAGGCGGTAAGGTTGGTCTGTTCGGTGGTGCGGGTGTTGGTAAAACCGTAAACATGATGGAG
CTGATCCGGAACATCGCGATTGAGCACTCCGGTTTCTCCGTGTTTGCTGGTGTGGGTGAGCGTACTCGTGAGGGTAACGA
CTTCTACCATGAAATGAAGGACTCCAACGTACTGGATAAAGTATCGCTGGTGTACGGTCAGATGAATGAGCCGCCTGGTA
ACCGTCTGCGTGTAGCGCTGACCGGTCTGACCATGGCCGAGAAGTTCCGTGACGAAGGTCGCGACGTACTGTTCTTCGTG
GATAACATTTACCGTTATACGCTGGCGGGTACGGAAGTATCTGCACTGTTGGGCCGTATGCCTTCAGCGGTAGGTTACCA
GCCGACTCTGGCGGAAGAGATGGGCGTTCTGCAGGAACGTATTACTTCCACCAAGACCGGTTCCATTACCTCCGTTCAGG
CGGTATATGTACCTGCGGATGACTTGACTGACCCGTCTCCGGCCACCACCTTCGCGCACTTGGATTCCACTGTATCCTTG
AGCCGTGATATCGCGTCTAAGGGTATCTACCCGGCGATTGACCCGCTGGATTCCACTTCGCGTCAGCTGGATCCGCTGGT
TATCGGTCAAGAGCACTACGACATTGCACGTGGCGTTCAAACCGTACTGCAGCGCTTTAAAGAGCTGAAAGACATCATCG
CTATTTTGGGTATGGACGAACTGTCAGAAGACGATAAACTGATTGTATCTCGTGCCCGTAAGATTGAGCGTTATTTGTCT
CAGCCGTTCTTTGTGGCCGAAGTATTTACTGGTTCCCCGGGCAAGTATGTTTCCCTGAAAGACACCCTCGCGGGCTTTAA
GGGCATCCTTGGCGGTGATTACGATCACATCCCGGAGCAGGACTTCTACATGAAGGGCTCTATCGACGAAGTGATTGAAG
CCTACAACAAGCGTAGCAAGTAA

Upstream 100 bases:

>100_bases
GCTATTACGCAGGAAATCTCCGAAATCGTTGGTGGTGCTGCTGCGGTTTAATCGTCAAGCAGATTAACGTGGCAAAAACG
CAAGTTAAGAGGATGCAAGC

Downstream 100 bases:

>100_bases
CCTGCACCTGGGAGACAAGCAAATGGCGATGACCGTGCATTGCGACATTGTAAGTGCAGAACGCCAGCTGTTCTCCGGCT
TGGTTGAAATTGTGGTAGCT

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta

Number of amino acids: Translated: 460; Mature: 459

Protein sequence:

>460_residues
MSSGRIVQIIGAVIDVEFPREAVPKVYDALSVDGTETTLEVQQQLGDGVVRTIAMGSTEGLKRGLGVTDNGEPIQVPVGT
KTLGRIMDVLGRPIDEAGPIGEEERMPIHRAAPTYADQAATNELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMME
LIRNIAIEHSGFSVFAGVGERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFV
DNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDSTVSL
SRDIASKGIYPAIDPLDSTSRQLDPLVIGQEHYDIARGVQTVLQRFKELKDIIAILGMDELSEDDKLIVSRARKIERYLS
QPFFVAEVFTGSPGKYVSLKDTLAGFKGILGGDYDHIPEQDFYMKGSIDEVIEAYNKRSK

Sequences:

>Translated_460_residues
MSSGRIVQIIGAVIDVEFPREAVPKVYDALSVDGTETTLEVQQQLGDGVVRTIAMGSTEGLKRGLGVTDNGEPIQVPVGT
KTLGRIMDVLGRPIDEAGPIGEEERMPIHRAAPTYADQAATNELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMME
LIRNIAIEHSGFSVFAGVGERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFV
DNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDSTVSL
SRDIASKGIYPAIDPLDSTSRQLDPLVIGQEHYDIARGVQTVLQRFKELKDIIAILGMDELSEDDKLIVSRARKIERYLS
QPFFVAEVFTGSPGKYVSLKDTLAGFKGILGGDYDHIPEQDFYMKGSIDEVIEAYNKRSK
>Mature_459_residues
SSGRIVQIIGAVIDVEFPREAVPKVYDALSVDGTETTLEVQQQLGDGVVRTIAMGSTEGLKRGLGVTDNGEPIQVPVGTK
TLGRIMDVLGRPIDEAGPIGEEERMPIHRAAPTYADQAATNELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMEL
IRNIAIEHSGFSVFAGVGERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVD
NIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDSTVSLS
RDIASKGIYPAIDPLDSTSRQLDPLVIGQEHYDIARGVQTVLQRFKELKDIIAILGMDELSEDDKLIVSRARKIERYLSQ
PFFVAEVFTGSPGKYVSLKDTLAGFKGILGGDYDHIPEQDFYMKGSIDEVIEAYNKRSK

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family

Homologues:

Organism=Homo sapiens, GI32189394, Length=468, Percent_Identity=66.4529914529915, Blast_Score=628, Evalue=1e-180,
Organism=Homo sapiens, GI19913428, Length=420, Percent_Identity=25, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI19913424, Length=315, Percent_Identity=26.984126984127, Blast_Score=112, Evalue=8e-25,
Organism=Homo sapiens, GI50345984, Length=303, Percent_Identity=26.0726072607261, Blast_Score=106, Evalue=5e-23,
Organism=Homo sapiens, GI4757810, Length=303, Percent_Identity=26.0726072607261, Blast_Score=106, Evalue=5e-23,
Organism=Homo sapiens, GI19913426, Length=397, Percent_Identity=23.4256926952141, Blast_Score=105, Evalue=7e-23,
Organism=Escherichia coli, GI1790170, Length=459, Percent_Identity=82.7886710239652, Blast_Score=782, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=360, Percent_Identity=30, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1790172, Length=436, Percent_Identity=24.0825688073394, Blast_Score=111, Evalue=8e-26,
Organism=Caenorhabditis elegans, GI25144756, Length=468, Percent_Identity=66.025641025641, Blast_Score=617, Evalue=1e-177,
Organism=Caenorhabditis elegans, GI17565854, Length=318, Percent_Identity=28.6163522012579, Blast_Score=119, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI17510931, Length=343, Percent_Identity=26.2390670553936, Blast_Score=119, Evalue=5e-27,
Organism=Caenorhabditis elegans, GI17570191, Length=404, Percent_Identity=23.7623762376238, Blast_Score=114, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI71988080, Length=303, Percent_Identity=26.0726072607261, Blast_Score=107, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI71988063, Length=303, Percent_Identity=26.0726072607261, Blast_Score=106, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI71988074, Length=331, Percent_Identity=24.4712990936556, Blast_Score=91, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6322581, Length=458, Percent_Identity=65.5021834061135, Blast_Score=609, Evalue=1e-175,
Organism=Saccharomyces cerevisiae, GI6319603, Length=405, Percent_Identity=26.6666666666667, Blast_Score=122, Evalue=2e-28,
Organism=Saccharomyces cerevisiae, GI6319370, Length=308, Percent_Identity=26.9480519480519, Blast_Score=107, Evalue=4e-24,
Organism=Saccharomyces cerevisiae, GI6320016, Length=259, Percent_Identity=26.2548262548263, Blast_Score=84, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24638766, Length=467, Percent_Identity=65.0963597430407, Blast_Score=609, Evalue=1e-174,
Organism=Drosophila melanogaster, GI28574560, Length=459, Percent_Identity=62.3093681917211, Blast_Score=557, Evalue=1e-159,
Organism=Drosophila melanogaster, GI281361666, Length=407, Percent_Identity=24.0786240786241, Blast_Score=115, Evalue=9e-26,
Organism=Drosophila melanogaster, GI24646341, Length=407, Percent_Identity=24.0786240786241, Blast_Score=115, Evalue=9e-26,
Organism=Drosophila melanogaster, GI17136796, Length=407, Percent_Identity=24.0786240786241, Blast_Score=115, Evalue=9e-26,
Organism=Drosophila melanogaster, GI20129479, Length=334, Percent_Identity=26.6467065868263, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24583992, Length=318, Percent_Identity=27.0440251572327, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24583988, Length=381, Percent_Identity=25.4593175853018, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24583986, Length=381, Percent_Identity=25.4593175853018, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24583984, Length=381, Percent_Identity=25.4593175853018, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24658560, Length=303, Percent_Identity=26.0726072607261, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24638768, Length=92, Percent_Identity=52.1739130434783, Blast_Score=90, Evalue=3e-18,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): ATPB_ALCBS (Q0VKX4)

Other databases:

- EMBL:   AM286690
- RefSeq:   YP_694446.1
- ProteinModelPortal:   Q0VKX4
- SMR:   Q0VKX4
- STRING:   Q0VKX4
- GeneID:   4213845
- GenomeReviews:   AM286690_GR
- KEGG:   abo:ABO_2726
- NMPDR:   fig|393595.12.peg.2735
- eggNOG:   COG0055
- HOGENOM:   HBG565875
- OMA:   IGQEHYD
- PhylomeDB:   Q0VKX4
- ProtClustDB:   PRK09280
- BioCyc:   ABOR393595:ABO_2726-MONOMER
- HAMAP:   MF_01347
- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100
- PANTHER:   PTHR15184:SF8
- SMART:   SM00382
- TIGRFAMs:   TIGR01039

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N; SSF47917 ATPase_a/b_C; SSF50615 ATPase_a/b_N

EC number: =3.6.3.14

Molecular weight: Translated: 50046; Mature: 49914

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSGRIVQIIGAVIDVEFPREAVPKVYDALSVDGTETTLEVQQQLGDGVVRTIAMGSTEG
CCCCCEEHEEHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHCCCHHH
LKRGLGVTDNGEPIQVPVGTKTLGRIMDVLGRPIDEAGPIGEEERMPIHRAAPTYADQAA
HHHCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCHHHHHH
TNELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGFSVFAGVGE
HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCC
RTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFV
CCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHCCCEEEEEE
DNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPAD
EHHHHEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
DLTDPSPATTFAHLDSTVSLSRDIASKGIYPAIDPLDSTSRQLDPLVIGQEHYDIARGVQ
CCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHCCCEEECCHHHHHHHHHH
TVLQRFKELKDIIAILGMDELSEDDKLIVSRARKIERYLSQPFFVAEVFTGSPGKYVSLK
HHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEHH
DTLAGFKGILGGDYDHIPEQDFYMKGSIDEVIEAYNKRSK
HHHHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHCCCC
>Mature Secondary Structure 
SSGRIVQIIGAVIDVEFPREAVPKVYDALSVDGTETTLEVQQQLGDGVVRTIAMGSTEG
CCCCEEHEEHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHCCCHHH
LKRGLGVTDNGEPIQVPVGTKTLGRIMDVLGRPIDEAGPIGEEERMPIHRAAPTYADQAA
HHHCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCHHHHHH
TNELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGFSVFAGVGE
HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCC
RTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFV
CCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHCCCEEEEEE
DNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPAD
EHHHHEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
DLTDPSPATTFAHLDSTVSLSRDIASKGIYPAIDPLDSTSRQLDPLVIGQEHYDIARGVQ
CCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHCCCEEECCHHHHHHHHHH
TVLQRFKELKDIIAILGMDELSEDDKLIVSRARKIERYLSQPFFVAEVFTGSPGKYVSLK
HHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEHH
DTLAGFKGILGGDYDHIPEQDFYMKGSIDEVIEAYNKRSK
HHHHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA