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The map label for this gene is ymdC [H]

Identifier: 110835560

GI number: 110835560

Start: 3050172

End: 3051575

Strand: Reverse

Name: ymdC [H]

Synonym: ABO_2699

Alternate gene names: 110835560

Gene position: 3051575-3050172 (Counterclockwise)

Preceding gene: 110835563

Following gene: 110835559

Centisome position: 97.8

GC content: 54.63

Gene sequence:

>1404_bases
ATGAGCCGAGCAACATCAGGCTCCGCACTTACACCGGTATCGTCTTTTTCTCTGGTGGCAGATAGCGATCAGGCTTTTAC
GCTGCGTGTTACTTTGGCGCGTTTGGCCACTCGCACACTGGATATGCAGTATTACATCTGGGATGACGACACGACCGGAA
AGCTGCTCATCTACCGAGTGTTGGAGGCAGCGCGGCGGGGCGTGAGGGTGCGCATGTTGTTGGATCATGCCAATCAGCTG
GGCCGGGATGTGAAGTGGGCGGTGCTGGATGCGCACCCAAATATTGAGGTGCGCCTGTTCAATCCGTTCAAGGGGCGCTA
CAAGCATTTTCTGCAATGGCTCTACTATGCTCCGCGATTAAATCACCGCATGCATAACAAAGCTTGGATTATGGACGGCG
AACGAGCGTTGGTGGGTGGGCGTAATGTTGCGGATCACTATTTCGGCGTAAATCCATCCACTAATTTCCGTGATCTGGAT
CTGTATGCCCATGGCGCCATCGTGGCCGACACGCAAATGGCTTTTGATGCCTTTTGGGATAGCCCGTTAGCGGTGTCTAT
GAAAAGTTACCGTCATCGCACGGAGGCGACAGCGGATCGGGCCTGGCGTTGGTTGGGGCGCTGGCGCACTTCATTGCAAG
GCTACCCTTACCTCTTTCCCCAGCATGAAGCATTTTTCACCGATTACTTGGCAAAACAAGAGCAGCAATGTGTGCAGGCT
CCGGCAGCGTTGCTGTTTGATAGCCCTGATAAGGCCAGTGGTGCGAAGCAGACGTTGATGGGAGAGCAACTGGCGCGTTT
GCTGGGCAGGCAAGACAATCGGGAGTTATTGATGGAGGCCAGTTATTTTATTCCCGGTGATGCTTTTGTTGAGGCGCTGG
GAGGGTTCCAGCAGCGCGGCGGACGCGCGGCGGTGCTGACTAACAGTTTGGCCACTAATGATGTGATTGCCGCTCATGGT
GCTTATGCGCGTTACCGTGCAGCACTGTTGGCTGCAGGGGTTGAGCTGCATGAATTACAGCCCAATGCCCGGGCACTGCA
CCGGCAGGTGCGGTTGTTCAAAGGGCGCTCCCAGGCGAGCCTGCATACCAAAGCGATGGTGTTGGATCGACGCGAAGTGT
TTGTCGGTTCTTTCAACATCGATCCGCGCTCGGTGCATTTGAATACCGAAATGGGATACTACGTAGTGTCCGCTGAACTG
GGGCAGCAGGTGGCGGCATTTATTGAAGAAGGGTTAGCGCCGGAAAACAGTTACCGTCTTGAAAAGCAGGAAGGCGAATT
ATTGTGGGGCGCGGATGGATATGACGGTAAGCCGGTCTTGTATTCCCGTGAACCCAAGGCCACCGTTTGGCGACGCATGC
TGGCATGGTTATTGTCGTTATTGCCGATTGAGCGGATGTTGTAA

Upstream 100 bases:

>100_bases
AAGGTCATGATGAGAGCGGAGAGGACGGCGGCATGCATACCGGTTTGCGGATTAACGAGCAACCACTATGGCCAATGCAT
TGGTCAAAAGGTGAAGGAAA

Downstream 100 bases:

>100_bases
TCACAGTCGTGCTTTGGCCATGCCATGCGTCTATGTCGACGCGAAAAGAATGAAAAAAGGAAAATCATGACCCAACCGTT
CTGTTTTCGTTTTCGGGTGC

Product: phospholipase D/transphosphatidylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 466

Protein sequence:

>467_residues
MSRATSGSALTPVSSFSLVADSDQAFTLRVTLARLATRTLDMQYYIWDDDTTGKLLIYRVLEAARRGVRVRMLLDHANQL
GRDVKWAVLDAHPNIEVRLFNPFKGRYKHFLQWLYYAPRLNHRMHNKAWIMDGERALVGGRNVADHYFGVNPSTNFRDLD
LYAHGAIVADTQMAFDAFWDSPLAVSMKSYRHRTEATADRAWRWLGRWRTSLQGYPYLFPQHEAFFTDYLAKQEQQCVQA
PAALLFDSPDKASGAKQTLMGEQLARLLGRQDNRELLMEASYFIPGDAFVEALGGFQQRGGRAAVLTNSLATNDVIAAHG
AYARYRAALLAAGVELHELQPNARALHRQVRLFKGRSQASLHTKAMVLDRREVFVGSFNIDPRSVHLNTEMGYYVVSAEL
GQQVAAFIEEGLAPENSYRLEKQEGELLWGADGYDGKPVLYSREPKATVWRRMLAWLLSLLPIERML

Sequences:

>Translated_467_residues
MSRATSGSALTPVSSFSLVADSDQAFTLRVTLARLATRTLDMQYYIWDDDTTGKLLIYRVLEAARRGVRVRMLLDHANQL
GRDVKWAVLDAHPNIEVRLFNPFKGRYKHFLQWLYYAPRLNHRMHNKAWIMDGERALVGGRNVADHYFGVNPSTNFRDLD
LYAHGAIVADTQMAFDAFWDSPLAVSMKSYRHRTEATADRAWRWLGRWRTSLQGYPYLFPQHEAFFTDYLAKQEQQCVQA
PAALLFDSPDKASGAKQTLMGEQLARLLGRQDNRELLMEASYFIPGDAFVEALGGFQQRGGRAAVLTNSLATNDVIAAHG
AYARYRAALLAAGVELHELQPNARALHRQVRLFKGRSQASLHTKAMVLDRREVFVGSFNIDPRSVHLNTEMGYYVVSAEL
GQQVAAFIEEGLAPENSYRLEKQEGELLWGADGYDGKPVLYSREPKATVWRRMLAWLLSLLPIERML
>Mature_466_residues
SRATSGSALTPVSSFSLVADSDQAFTLRVTLARLATRTLDMQYYIWDDDTTGKLLIYRVLEAARRGVRVRMLLDHANQLG
RDVKWAVLDAHPNIEVRLFNPFKGRYKHFLQWLYYAPRLNHRMHNKAWIMDGERALVGGRNVADHYFGVNPSTNFRDLDL
YAHGAIVADTQMAFDAFWDSPLAVSMKSYRHRTEATADRAWRWLGRWRTSLQGYPYLFPQHEAFFTDYLAKQEQQCVQAP
AALLFDSPDKASGAKQTLMGEQLARLLGRQDNRELLMEASYFIPGDAFVEALGGFQQRGGRAAVLTNSLATNDVIAAHGA
YARYRAALLAAGVELHELQPNARALHRQVRLFKGRSQASLHTKAMVLDRREVFVGSFNIDPRSVHLNTEMGYYVVSAELG
QQVAAFIEEGLAPENSYRLEKQEGELLWGADGYDGKPVLYSREPKATVWRRMLAWLLSLLPIERML

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=449, Percent_Identity=39.1982182628062, Blast_Score=279, Evalue=2e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53004; Mature: 52873

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRATSGSALTPVSSFSLVADSDQAFTLRVTLARLATRTLDMQYYIWDDDTTGKLLIYRV
CCCCCCCCCCCCCCCCEEEECCCCEEEEEEEHHHHHHHHEEEEEEEECCCCCCHHHHHHH
LEAARRGVRVRMLLDHANQLGRDVKWAVLDAHPNIEVRLFNPFKGRYKHFLQWLYYAPRL
HHHHHCCCEEEHHHHHHHHHCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHCCCC
NHRMHNKAWIMDGERALVGGRNVADHYFGVNPSTNFRDLDLYAHGAIVADTQMAFDAFWD
CCCCCCCEEEECCCEEEECCCCCHHHHCCCCCCCCCEEEEEEECCEEEECHHHHHHHHCC
SPLAVSMKSYRHRTEATADRAWRWLGRWRTSLQGYPYLFPQHEAFFTDYLAKQEQQCVQA
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHC
PAALLFDSPDKASGAKQTLMGEQLARLLGRQDNRELLMEASYFIPGDAFVEALGGFQQRG
CHHHEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHECCCCCCCHHHHHHHCCHHHCC
GRAAVLTNSLATNDVIAAHGAYARYRAALLAAGVELHELQPNARALHRQVRLFKGRSQAS
CEEEEEECCCCCCCEEECCCHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCCHH
LHTKAMVLDRREVFVGSFNIDPRSVHLNTEMGYYVVSAELGQQVAAFIEEGLAPENSYRL
HHHHHHEEECCEEEEEEECCCCCEEEEECCCCEEEEEHHHHHHHHHHHHHCCCCCCCCEE
EKQEGELLWGADGYDGKPVLYSREPKATVWRRMLAWLLSLLPIERML
ECCCCCEEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SRATSGSALTPVSSFSLVADSDQAFTLRVTLARLATRTLDMQYYIWDDDTTGKLLIYRV
CCCCCCCCCCCCCCCEEEECCCCEEEEEEEHHHHHHHHEEEEEEEECCCCCCHHHHHHH
LEAARRGVRVRMLLDHANQLGRDVKWAVLDAHPNIEVRLFNPFKGRYKHFLQWLYYAPRL
HHHHHCCCEEEHHHHHHHHHCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHCCCC
NHRMHNKAWIMDGERALVGGRNVADHYFGVNPSTNFRDLDLYAHGAIVADTQMAFDAFWD
CCCCCCCEEEECCCEEEECCCCCHHHHCCCCCCCCCEEEEEEECCEEEECHHHHHHHHCC
SPLAVSMKSYRHRTEATADRAWRWLGRWRTSLQGYPYLFPQHEAFFTDYLAKQEQQCVQA
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHC
PAALLFDSPDKASGAKQTLMGEQLARLLGRQDNRELLMEASYFIPGDAFVEALGGFQQRG
CHHHEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHECCCCCCCHHHHHHHCCHHHCC
GRAAVLTNSLATNDVIAAHGAYARYRAALLAAGVELHELQPNARALHRQVRLFKGRSQAS
CEEEEEECCCCCCCEEECCCHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCCHH
LHTKAMVLDRREVFVGSFNIDPRSVHLNTEMGYYVVSAELGQQVAAFIEEGLAPENSYRL
HHHHHHEEECCEEEEEEECCCCCEEEEECCCCEEEEEHHHHHHHHHHHHHCCCCCCCCEE
EKQEGELLWGADGYDGKPVLYSREPKATVWRRMLAWLLSLLPIERML
ECCCCCEEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]