Click here to switch to the map view.

The map label for this gene is gtrB [C]

Identifier: 110835548

GI number: 110835548

Start: 3033354

End: 3034724

Strand: Direct

Name: gtrB [C]

Synonym: ABO_2687

Alternate gene names: 110835548

Gene position: 3033354-3034724 (Clockwise)

Preceding gene: 110835547

Following gene: 110835549

Centisome position: 97.22

GC content: 58.86

Gene sequence:

>1371_bases
ATGGAATGGCTTCCCTTGTCCATGTTTGTGGCCGTATGCGTGGTATTGCTTACCGGCTACCCAGTGGCCTTTGCCCTAGG
CGGCACCGCGCTGCTGTTTGCAGCTGGCGGCATGCTTACCGGTACCTTTTCTCCTTCTGACCTGAGTTTTGTGCCCAACC
GACTATTCGGGATCATCGAAAACAGCACACTAATGGCGGTACCCCTGTTCGTATTCATGGGCGTGATGCTAGAGAAATCT
CGGGTGGCGGAAAAACTGCTGTCCAGCATGGGCCAGCTATTCGGGCCACTCCCTGGCGGCATGGGGCTAGCGATTATTTT
GGTGGGCGCCCTGCTCGCCGCCAGCACCGGCATTGTCGGCGCCACCGTGGTCACTATGGGCCTGCTCTCGCTGCCCACCA
TGCTTCGTCAGGGCTATCAACCACAGTTATCCACCGGGCTGATCTGCGCCACCGGCACCCTCGGGCAGATTATCCCCCCC
TCCATAGCCCTGGTATTACTGGGTGATGTGCTGGCTAACGCCTATCAGGACATCCAGCTCAAGCAGGGCCTGTGGTCGCT
GGATACCGTGTCGGTGGGCGATTTATTTGTCGGCGCCCTGATTCCCGGGCTGATTTTAGTAGGGCTGTACCTGTTCTATG
TGGTGGCAATCAGCCTGTTAAAACCCCAATGGGCTCCCGCCTTTGCGCCCGCCGACGGTGAACGCCGTAGCTGGCGGGCC
CTGCTTGGCGGCCTGATCCCGCCGCTACTGTTGATCGCCGCGGTGCTGGGCTCCATTCTCACCGGCAAGGCCACCCCCAC
GGAAGCCGCCGGCGTCGGCGCCTTTGGTGCCCTGCTGCTGGGGGCAGCCAATCGACACCTGAACAGAACCATCCTTGGCG
AGGTGGTCCGTGCCACCAGCCGAGTCACCGCCATGGTGTTCATGATCCTGATCGGTGCCAGCCTGTTTTCACTGGTGTTC
CGGGGCTTTGGCGGCGAGGAAGCGGTGCATAATCTGTTTGCCGCCATGCCCGGTGGAGTGATCGGTGCCACCGTCATGGT
GATGCTGCTGATTTTCCTGCTCGGCTTCATTCTCGACTTTATCGAGATCACCTTTGTGGTAGTGCCGATTGTCGCCCCGG
TGCTACTGGGCATGGGGCTGGACCCCATCTGGCTTGGCGTAATGATTGCATTGAACTTGCAAACTTCGTTTCTGACCCCA
CCCTTCGGATTCGCGCTGTTTTATCTACGCGGGGTGGCGCCGGCAGAGGTTAAAACCACGCACATTTATCAGGGCGTGAT
ACCCTTTATCTTTATACAATTAATCATGCTGGGCATTCTGGCGCTGTTCCCTGAACTCGCCACCTGGCTGCCTCATGCGC
TCTACGGATAA

Upstream 100 bases:

>100_bases
AGGCATTGGCTGAACTGCTACGCCATGGGCTAACGTTACTTGGCGCCCCCCTTCCCCCACGCACCACCGAACATGAGAAA
CACCCGGAGGAGGGCCTGTG

Downstream 100 bases:

>100_bases
TAAAATGACAGACCACACTGACGACATGCCCCAGCCAATTGGCACCCTTGCCATCCAAACCATTGCCATGCCACAAAGCG
CCAACTGGAATGGGGATATT

Product: TRAP-type transport system large permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 456; Mature: 456

Protein sequence:

>456_residues
MEWLPLSMFVAVCVVLLTGYPVAFALGGTALLFAAGGMLTGTFSPSDLSFVPNRLFGIIENSTLMAVPLFVFMGVMLEKS
RVAEKLLSSMGQLFGPLPGGMGLAIILVGALLAASTGIVGATVVTMGLLSLPTMLRQGYQPQLSTGLICATGTLGQIIPP
SIALVLLGDVLANAYQDIQLKQGLWSLDTVSVGDLFVGALIPGLILVGLYLFYVVAISLLKPQWAPAFAPADGERRSWRA
LLGGLIPPLLLIAAVLGSILTGKATPTEAAGVGAFGALLLGAANRHLNRTILGEVVRATSRVTAMVFMILIGASLFSLVF
RGFGGEEAVHNLFAAMPGGVIGATVMVMLLIFLLGFILDFIEITFVVVPIVAPVLLGMGLDPIWLGVMIALNLQTSFLTP
PFGFALFYLRGVAPAEVKTTHIYQGVIPFIFIQLIMLGILALFPELATWLPHALYG

Sequences:

>Translated_456_residues
MEWLPLSMFVAVCVVLLTGYPVAFALGGTALLFAAGGMLTGTFSPSDLSFVPNRLFGIIENSTLMAVPLFVFMGVMLEKS
RVAEKLLSSMGQLFGPLPGGMGLAIILVGALLAASTGIVGATVVTMGLLSLPTMLRQGYQPQLSTGLICATGTLGQIIPP
SIALVLLGDVLANAYQDIQLKQGLWSLDTVSVGDLFVGALIPGLILVGLYLFYVVAISLLKPQWAPAFAPADGERRSWRA
LLGGLIPPLLLIAAVLGSILTGKATPTEAAGVGAFGALLLGAANRHLNRTILGEVVRATSRVTAMVFMILIGASLFSLVF
RGFGGEEAVHNLFAAMPGGVIGATVMVMLLIFLLGFILDFIEITFVVVPIVAPVLLGMGLDPIWLGVMIALNLQTSFLTP
PFGFALFYLRGVAPAEVKTTHIYQGVIPFIFIQLIMLGILALFPELATWLPHALYG
>Mature_456_residues
MEWLPLSMFVAVCVVLLTGYPVAFALGGTALLFAAGGMLTGTFSPSDLSFVPNRLFGIIENSTLMAVPLFVFMGVMLEKS
RVAEKLLSSMGQLFGPLPGGMGLAIILVGALLAASTGIVGATVVTMGLLSLPTMLRQGYQPQLSTGLICATGTLGQIIPP
SIALVLLGDVLANAYQDIQLKQGLWSLDTVSVGDLFVGALIPGLILVGLYLFYVVAISLLKPQWAPAFAPADGERRSWRA
LLGGLIPPLLLIAAVLGSILTGKATPTEAAGVGAFGALLLGAANRHLNRTILGEVVRATSRVTAMVFMILIGASLFSLVF
RGFGGEEAVHNLFAAMPGGVIGATVMVMLLIFLLGFILDFIEITFVVVPIVAPVLLGMGLDPIWLGVMIALNLQTSFLTP
PFGFALFYLRGVAPAEVKTTHIYQGVIPFIFIQLIMLGILALFPELATWLPHALYG

Specific function: Unknown

COG id: COG4664

COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TRAP transporter large permease family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=435, Percent_Identity=24.5977011494253, Blast_Score=89, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 47952; Mature: 47952

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEWLPLSMFVAVCVVLLTGYPVAFALGGTALLFAAGGMLTGTFSPSDLSFVPNRLFGIIE
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHC
NSTLMAVPLFVFMGVMLEKSRVAEKLLSSMGQLFGPLPGGMGLAIILVGALLAASTGIVG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHH
ATVVTMGLLSLPTMLRQGYQPQLSTGLICATGTLGQIIPPSIALVLLGDVLANAYQDIQL
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
KQGLWSLDTVSVGDLFVGALIPGLILVGLYLFYVVAISLLKPQWAPAFAPADGERRSWRA
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
LLGGLIPPLLLIAAVLGSILTGKATPTEAAGVGAFGALLLGAANRHLNRTILGEVVRATS
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RVTAMVFMILIGASLFSLVFRGFGGEEAVHNLFAAMPGGVIGATVMVMLLIFLLGFILDF
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
IEITFVVVPIVAPVLLGMGLDPIWLGVMIALNLQTSFLTPPFGFALFYLRGVAPAEVKTT
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHH
HIYQGVIPFIFIQLIMLGILALFPELATWLPHALYG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEWLPLSMFVAVCVVLLTGYPVAFALGGTALLFAAGGMLTGTFSPSDLSFVPNRLFGIIE
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHC
NSTLMAVPLFVFMGVMLEKSRVAEKLLSSMGQLFGPLPGGMGLAIILVGALLAASTGIVG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHH
ATVVTMGLLSLPTMLRQGYQPQLSTGLICATGTLGQIIPPSIALVLLGDVLANAYQDIQL
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
KQGLWSLDTVSVGDLFVGALIPGLILVGLYLFYVVAISLLKPQWAPAFAPADGERRSWRA
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
LLGGLIPPLLLIAAVLGSILTGKATPTEAAGVGAFGALLLGAANRHLNRTILGEVVRATS
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RVTAMVFMILIGASLFSLVFRGFGGEEAVHNLFAAMPGGVIGATVMVMLLIFLLGFILDF
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
IEITFVVVPIVAPVLLGMGLDPIWLGVMIALNLQTSFLTPPFGFALFYLRGVAPAEVKTT
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHH
HIYQGVIPFIFIQLIMLGILALFPELATWLPHALYG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]