Definition Alcanivorax borkumensis SK2 chromosome, complete genome.
Accession NC_008260
Length 3,120,143

Click here to switch to the map view.

The map label for this gene is 110835534

Identifier: 110835534

GI number: 110835534

Start: 3020880

End: 3021467

Strand: Direct

Name: 110835534

Synonym: ABO_2673

Alternate gene names: NA

Gene position: 3020880-3021467 (Clockwise)

Preceding gene: 110835532

Following gene: 110835535

Centisome position: 96.82

GC content: 57.82

Gene sequence:

>588_bases
GTGTCGCACAATCCCGCCCCGCTGGAAATATTCATGGAAGCCCTGTTCAGCGCCTTTGTGCTAGTTGCCCTTGGGGAAAT
TGGCGACAAGACACAGCTATTATCTCTCGCGCTGATTCTCAAATTTCGCAAACCGTGGCCTATCCTCGCCGGCGTAGTGG
TGGCGACCCTGCTCAACCACGGTGCCTCGGTCTGGTTTGGAGACTGGCTGGCCAGCACCATCCCCCTGGAGTGGCTGCGC
TGGACTCTTGGCCTCAGCTTTATCGGCCTGGGCTTGTGGATGCTAATCCCGGACGCCGATGAAGAAGTGGAAGACAACCC
TCGCTTCGGCCCTTTCCTTACCGCACTGGTGTTGTTCTTCATTGCTGAAATCGGCGACAAGACCCAGCTGGCCACCATCG
CCCTGGCGATACAGTTCAAAGATCAGTTCTGGCCAGTACTAAGCGGCTCCACCCTGGGCATGATCGCCGCCAACCTGCCG
GTCATCTGGCTGGCCCACCAATTCGGCAGCCAACAATTTGAAACCTGGGCCCATCGCATCAGCGCAGCGTTGTTCGTGGG
TTTCGGGATAATTGCGCTTCTCGGCTGA

Upstream 100 bases:

>100_bases
GCCTCATGCGCATGGTGGCTGCGTCCGCATCCTTACGGATTGACGAGACCTGAGACATTGCAGGCATTCCGCAGGGGCGG
GATTCGCCGGTGATGTCTCT

Downstream 100 bases:

>100_bases
CGCAACCTCGTGTGGGAGGGCTCGTTCGACCGCGCCCACACAAAACGACTGTTGCGCCCGCCGTACACACTCCAACCTGA
TACAATCAGCCCCTTTTGCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MSHNPAPLEIFMEALFSAFVLVALGEIGDKTQLLSLALILKFRKPWPILAGVVVATLLNHGASVWFGDWLASTIPLEWLR
WTLGLSFIGLGLWMLIPDADEEVEDNPRFGPFLTALVLFFIAEIGDKTQLATIALAIQFKDQFWPVLSGSTLGMIAANLP
VIWLAHQFGSQQFETWAHRISAALFVGFGIIALLG

Sequences:

>Translated_195_residues
MSHNPAPLEIFMEALFSAFVLVALGEIGDKTQLLSLALILKFRKPWPILAGVVVATLLNHGASVWFGDWLASTIPLEWLR
WTLGLSFIGLGLWMLIPDADEEVEDNPRFGPFLTALVLFFIAEIGDKTQLATIALAIQFKDQFWPVLSGSTLGMIAANLP
VIWLAHQFGSQQFETWAHRISAALFVGFGIIALLG
>Mature_194_residues
SHNPAPLEIFMEALFSAFVLVALGEIGDKTQLLSLALILKFRKPWPILAGVVVATLLNHGASVWFGDWLASTIPLEWLRW
TLGLSFIGLGLWMLIPDADEEVEDNPRFGPFLTALVLFFIAEIGDKTQLATIALAIQFKDQFWPVLSGSTLGMIAANLPV
IWLAHQFGSQQFETWAHRISAALFVGFGIIALLG

Specific function: Unknown

COG id: COG2119

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21459; Mature: 21328

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHNPAPLEIFMEALFSAFVLVALGEIGDKTQLLSLALILKFRKPWPILAGVVVATLLNH
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
GASVWFGDWLASTIPLEWLRWTLGLSFIGLGLWMLIPDADEEVEDNPRFGPFLTALVLFF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
IAEIGDKTQLATIALAIQFKDQFWPVLSGSTLGMIAANLPVIWLAHQFGSQQFETWAHRI
HHHCCCCHHHHHHHEEEEEHHHHCCCCCCCHHHHHHHCCCCEEHHHHHCCHHHHHHHHHH
SAALFVGFGIIALLG
HHHHHHHHHHHHHCC
>Mature Secondary Structure 
SHNPAPLEIFMEALFSAFVLVALGEIGDKTQLLSLALILKFRKPWPILAGVVVATLLNH
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
GASVWFGDWLASTIPLEWLRWTLGLSFIGLGLWMLIPDADEEVEDNPRFGPFLTALVLFF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
IAEIGDKTQLATIALAIQFKDQFWPVLSGSTLGMIAANLPVIWLAHQFGSQQFETWAHRI
HHHCCCCHHHHHHHEEEEEHHHHCCCCCCCHHHHHHHCCCCEEHHHHHCCHHHHHHHHHH
SAALFVGFGIIALLG
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA