| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110835505
Identifier: 110835505
GI number: 110835505
Start: 2989907
End: 2991757
Strand: Reverse
Name: 110835505
Synonym: ABO_2644
Alternate gene names: NA
Gene position: 2991757-2989907 (Counterclockwise)
Preceding gene: 110835506
Following gene: 110835504
Centisome position: 95.89
GC content: 56.24
Gene sequence:
>1851_bases ATGAAGGGAACATTCAGAGTTGCCAGTTTGGCAGTGGCGGTAGCCATTGCCGGGTGCGGCGGAGATGGAAGTAGCGGGAG TGACAGCCCTTCTACAGGTGCCGATAAATCAGGTAGTGCGGTCAAAGGCAGTGCGGTCAAGGGCCCGTTGGCGAACGCTG CGGTGACGCTCTATCAACTGGATTTCAATGCTGCTGGCGGGCTTGGCGAGCAACTGGACACCGGCAGTACTGACAGGGAA GCCGCATTTTCAGGGGTCAGCATCCCTGATGGAACAAGCGGAGAGGTGCTCGTAGAAGTGCAGGCGGATGCCGATACGTT GGATCTCACTACGGGCCAGGCGCCGGTCATCACGCGATTGCTTTCTGTCACCTCGGCAGAGGCCGTTGCTGCCGGTGAGA CCAATTACCCAACGCCACTAAGTACCTTGGTGGTGAACATGGCGCTGAGTAATGCGGACAGCAACACCAATGGCTTTATT GGTGATACCGATGGAACCGTTACCGCCGCAGAGTGGACTGCCGCCTTGAAACTGGCCAAGAACAAGGTGCGTAGCCAGTT CGGTTTCGGGCTTCTGGATAATAGCGTTGATTTGCTCTCTTCCCCGCCGCTGATCACTAGTGATCAGGACGATCAGGCGC AGGTGGTCAAGCTGAGAACGGCGGTGGAAGCGGTCGCCGCGCTGATGGCGGATATGGCCAAAACAGCAAAGTTGGCGGAC CCCGGTAGCACCGAAACGGCGGACTCCATGTTCAACGCATTGTCTGAAGACCTGAATGATGGTCAGGTTGATGGCAAGAG TGGCGAGGCTGCCATTGCCTCTTTCGCCAACATTGCGGACGTTGTCGCGGAAGTAACTCAGAACCCTTCCTCCTTAACTA TTCCCGGTTCTACCAAAACGGTATCTCAAGTTGCGTCAGTGGTGGCTGGTGAAACGCAAGATACAGGGGTCGACACCGAT ACCTCCACGGCAGAGAACACCTCCCCAGTTGTTGAACCGGCGGAAGTGGAAAGTGACATCGACCTAGATGGCACGCCGGA TACTAGCGATGCCGATATCGATGGTGATGGCCTGTTGAACGAACAGGACACCGCGCCCTACGACCCGGACCGCGATGAAG ATGGTGTTGAGGATGGCACCGATGCCTTCCCTGACGACTCTTCTGAAACAACCGATACCGATGAAGACGGCGTAGGGGAT AACACGGATAAGTTCCCTGAAGACCCAGCCGAAACTATCGACAGTGACGAAGATGGTGTTGGGGATAATGGCGATGTCTT TCCGCAAGACCCAGCCGAGACTACAGACACGGATGGTGACGGCGTCGGCGACAACGCTGATGTTTTCCCCAACGATCCAG ACGAAACCGTGGATAGGGATGAAGACGGCGTAGGGGATAATGGCGATGTCTTCCCTGAAGATCCGTCTGAAACGAGTGAC GCGGATAATGACGGTGTCGGCGATAACAGTGACGCCTTCCCCAGTGATGCTTCCGAAACGATGGACAGTGATTCTGATGG GGTTGGTGACAACGCAGACGCTTTCCCGAATGACCCCACCGAAGCTCTGGACAGCGACGGCGATGGCGTGGGGGACAATG CGGATGCCTTCCCCGGTAACGCCAATGAAAGTGCTGACCGCGATAACGATGGTGTAGGCGATAACGAAGATGCCTTCCCT GACGATGCTACCGAAAGCGAGGATGCGGACGGCGATGGATACGGCGCCAATACCGCAGACCCGGATGATGCTGATCCCTG TAATCCGGATACCAATGCGCCTTCCTGCACAACTGAAACGCCAGGTGCAGTCTGGAATGAATTTGACTGGGATGAAGCCA ACTGGCAGTGA
Upstream 100 bases:
>100_bases AGGTTTTTTTGTTTTATACCTTAAATGGGTGATGTGCGCTCTTGTTGCTCAGGTTTAGTTTGGTGCTATACCAAAACTGG GGTGATCGGAGACATCACAC
Downstream 100 bases:
>100_bases GGCCATTGGTTAAAGGAAATAACCTTAGAGGGTAAAAGAGATGAAAAAAGTAATCCTGACAGGCCTCGCCGCAACTGTGA TGAGTGCCAGCGCAATAGCG
Product: hypothetical protein
Products: NA
Alternate protein names: OmpA-Like Transmembrane Domain-Containing Protein; Ricin B Lectin; ATPase; AAA ATPase Containing Von Willebrand Factor Type A; Collagenase Family Protein; Thrombospondin Type 3 Repeat Family; Dihydroxyacid Dehydratase/Phosphogluconate Dehydratase; Lipoprotein
Number of amino acids: Translated: 616; Mature: 616
Protein sequence:
>616_residues MKGTFRVASLAVAVAIAGCGGDGSSGSDSPSTGADKSGSAVKGSAVKGPLANAAVTLYQLDFNAAGGLGEQLDTGSTDRE AAFSGVSIPDGTSGEVLVEVQADADTLDLTTGQAPVITRLLSVTSAEAVAAGETNYPTPLSTLVVNMALSNADSNTNGFI GDTDGTVTAAEWTAALKLAKNKVRSQFGFGLLDNSVDLLSSPPLITSDQDDQAQVVKLRTAVEAVAALMADMAKTAKLAD PGSTETADSMFNALSEDLNDGQVDGKSGEAAIASFANIADVVAEVTQNPSSLTIPGSTKTVSQVASVVAGETQDTGVDTD TSTAENTSPVVEPAEVESDIDLDGTPDTSDADIDGDGLLNEQDTAPYDPDRDEDGVEDGTDAFPDDSSETTDTDEDGVGD NTDKFPEDPAETIDSDEDGVGDNGDVFPQDPAETTDTDGDGVGDNADVFPNDPDETVDRDEDGVGDNGDVFPEDPSETSD ADNDGVGDNSDAFPSDASETMDSDSDGVGDNADAFPNDPTEALDSDGDGVGDNADAFPGNANESADRDNDGVGDNEDAFP DDATESEDADGDGYGANTADPDDADPCNPDTNAPSCTTETPGAVWNEFDWDEANWQ
Sequences:
>Translated_616_residues MKGTFRVASLAVAVAIAGCGGDGSSGSDSPSTGADKSGSAVKGSAVKGPLANAAVTLYQLDFNAAGGLGEQLDTGSTDRE AAFSGVSIPDGTSGEVLVEVQADADTLDLTTGQAPVITRLLSVTSAEAVAAGETNYPTPLSTLVVNMALSNADSNTNGFI GDTDGTVTAAEWTAALKLAKNKVRSQFGFGLLDNSVDLLSSPPLITSDQDDQAQVVKLRTAVEAVAALMADMAKTAKLAD PGSTETADSMFNALSEDLNDGQVDGKSGEAAIASFANIADVVAEVTQNPSSLTIPGSTKTVSQVASVVAGETQDTGVDTD TSTAENTSPVVEPAEVESDIDLDGTPDTSDADIDGDGLLNEQDTAPYDPDRDEDGVEDGTDAFPDDSSETTDTDEDGVGD NTDKFPEDPAETIDSDEDGVGDNGDVFPQDPAETTDTDGDGVGDNADVFPNDPDETVDRDEDGVGDNGDVFPEDPSETSD ADNDGVGDNSDAFPSDASETMDSDSDGVGDNADAFPNDPTEALDSDGDGVGDNADAFPGNANESADRDNDGVGDNEDAFP DDATESEDADGDGYGANTADPDDADPCNPDTNAPSCTTETPGAVWNEFDWDEANWQ >Mature_616_residues MKGTFRVASLAVAVAIAGCGGDGSSGSDSPSTGADKSGSAVKGSAVKGPLANAAVTLYQLDFNAAGGLGEQLDTGSTDRE AAFSGVSIPDGTSGEVLVEVQADADTLDLTTGQAPVITRLLSVTSAEAVAAGETNYPTPLSTLVVNMALSNADSNTNGFI GDTDGTVTAAEWTAALKLAKNKVRSQFGFGLLDNSVDLLSSPPLITSDQDDQAQVVKLRTAVEAVAALMADMAKTAKLAD PGSTETADSMFNALSEDLNDGQVDGKSGEAAIASFANIADVVAEVTQNPSSLTIPGSTKTVSQVASVVAGETQDTGVDTD TSTAENTSPVVEPAEVESDIDLDGTPDTSDADIDGDGLLNEQDTAPYDPDRDEDGVEDGTDAFPDDSSETTDTDEDGVGD NTDKFPEDPAETIDSDEDGVGDNGDVFPQDPAETTDTDGDGVGDNADVFPNDPDETVDRDEDGVGDNGDVFPEDPSETSD ADNDGVGDNSDAFPSDASETMDSDSDGVGDNADAFPNDPTEALDSDGDGVGDNADAFPGNANESADRDNDGVGDNEDAFP DDATESEDADGDGYGANTADPDDADPCNPDTNAPSCTTETPGAVWNEFDWDEANWQ
Specific function: Unknown
COG id: COG5271
COG function: function code R; AAA ATPase containing von Willebrand factor type A (vWA) domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62707; Mature: 62707
Theoretical pI: Translated: 3.20; Mature: 3.20
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKGTFRVASLAVAVAIAGCGGDGSSGSDSPSTGADKSGSAVKGSAVKGPLANAAVTLYQL CCCCHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE DFNAAGGLGEQLDTGSTDREAAFSGVSIPDGTSGEVLVEVQADADTLDLTTGQAPVITRL ECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEEEECCCCEEEECCCCHHHHHHH LSVTSAEAVAAGETNYPTPLSTLVVNMALSNADSNTNGFIGDTDGTVTAAEWTAALKLAK HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHH NKVRSQFGFGLLDNSVDLLSSPPLITSDQDDQAQVVKLRTAVEAVAALMADMAKTAKLAD HHHHHHHCCCHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PGSTETADSMFNALSEDLNDGQVDGKSGEAAIASFANIADVVAEVTQNPSSLTIPGSTKT CCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCHHH VSQVASVVAGETQDTGVDTDTSTAENTSPVVEPAEVESDIDLDGTPDTSDADIDGDGLLN HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC EQDTAPYDPDRDEDGVEDGTDAFPDDSSETTDTDEDGVGDNTDKFPEDPAETIDSDEDGV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC GDNGDVFPQDPAETTDTDGDGVGDNADVFPNDPDETVDRDEDGVGDNGDVFPEDPSETSD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC ADNDGVGDNSDAFPSDASETMDSDSDGVGDNADAFPNDPTEALDSDGDGVGDNADAFPGN CCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC ANESADRDNDGVGDNEDAFPDDATESEDADGDGYGANTADPDDADPCNPDTNAPSCTTET CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PGAVWNEFDWDEANWQ CCCCCCCCCCCCCCCC >Mature Secondary Structure MKGTFRVASLAVAVAIAGCGGDGSSGSDSPSTGADKSGSAVKGSAVKGPLANAAVTLYQL CCCCHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE DFNAAGGLGEQLDTGSTDREAAFSGVSIPDGTSGEVLVEVQADADTLDLTTGQAPVITRL ECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEEEECCCCEEEECCCCHHHHHHH LSVTSAEAVAAGETNYPTPLSTLVVNMALSNADSNTNGFIGDTDGTVTAAEWTAALKLAK HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHH NKVRSQFGFGLLDNSVDLLSSPPLITSDQDDQAQVVKLRTAVEAVAALMADMAKTAKLAD HHHHHHHCCCHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PGSTETADSMFNALSEDLNDGQVDGKSGEAAIASFANIADVVAEVTQNPSSLTIPGSTKT CCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCHHH VSQVASVVAGETQDTGVDTDTSTAENTSPVVEPAEVESDIDLDGTPDTSDADIDGDGLLN HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC EQDTAPYDPDRDEDGVEDGTDAFPDDSSETTDTDEDGVGDNTDKFPEDPAETIDSDEDGV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC GDNGDVFPQDPAETTDTDGDGVGDNADVFPNDPDETVDRDEDGVGDNGDVFPEDPSETSD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC ADNDGVGDNSDAFPSDASETMDSDSDGVGDNADAFPNDPTEALDSDGDGVGDNADAFPGN CCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC ANESADRDNDGVGDNEDAFPDDATESEDADGDGYGANTADPDDADPCNPDTNAPSCTTET CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PGAVWNEFDWDEANWQ CCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA