Click here to switch to the map view.

The map label for this gene is yqfA [C]

Identifier: 110835495

GI number: 110835495

Start: 2982326

End: 2983000

Strand: Direct

Name: yqfA [C]

Synonym: ABO_2634

Alternate gene names: 110835495

Gene position: 2982326-2983000 (Clockwise)

Preceding gene: 110835483

Following gene: 110835496

Centisome position: 95.58

GC content: 56.3

Gene sequence:

>675_bases
ATGGCCACAGCCCCCAACCCGGAACCGCCGTATTCGATTCTGGAAGAATGGCTCAATGGACTAACCCACGGCATTGGCGC
AGCCCTGAGCATTGCTGGCACCGTAATCTTAGTAGTTGCAGCCAGCCTGTTGGGCGACCCGTGGAAGATCGTCAGTTTTA
GCATTTTCGGCGCCAGCCTGATTCTGCTCTACAGCGCCAGCGCGCTCTATCACAGCCTACGCAACCCGAAGTGGCGCGCC
GCCTTCAAGATGCTGGATCACTGCGCTATCTATTGCTTGATTGCCGGCACTTACACGCCCTTTCTGCTGGTCAACCTGCG
TGGCCAGACCGGCTGGATTCTGTTTGCGGTGATCTGGGTACTGGCGCTCACCGGCATCGCCCTGAAAGCGCTGTATGGCC
ACCGCTTCAAACTAATGCGCGTGGGCATTTACCTCGCCATGGGCTGGCTGATTGTGGTCGCCTCCAATGACCTAACCACC
AAACTCAACGATACCGGCTTCTGGCTGATCCTGGCCGGCGGCATCACCTACACCGTGGGCGTGATCTTCTACTTGGCCGA
CCGTTTTATTCCCTTCAATCATGCCATCTGGCACCTGTTTGTTATGGGCGGCAGTATTTGTCATTTTTTAGCGGTCTATT
ATGGCGTGCTACCTTTTACCACTCCCGTCGGCTGA

Upstream 100 bases:

>100_bases
CCGAACATTCAATGTGTACATCTGTCCGATTTCGCACTTTACACCCCGGCCCACACCTCGGCATCATGCTACTTCTGTTA
ATAACCGAGAAGACTCGCCA

Downstream 100 bases:

>100_bases
TCAGCCTTACAATACTTCAACAAAATTCGAAAAAAGCTTGAGGTCTGAATAGCAACAATATAATTTTTACTTAATTATAT
ATTGTTGGATCCGCTCCATG

Product: hemolysin III-like protein

Products: NA

Alternate protein names: Hemolysin III; Hly-III [H]

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MATAPNPEPPYSILEEWLNGLTHGIGAALSIAGTVILVVAASLLGDPWKIVSFSIFGASLILLYSASALYHSLRNPKWRA
AFKMLDHCAIYCLIAGTYTPFLLVNLRGQTGWILFAVIWVLALTGIALKALYGHRFKLMRVGIYLAMGWLIVVASNDLTT
KLNDTGFWLILAGGITYTVGVIFYLADRFIPFNHAIWHLFVMGGSICHFLAVYYGVLPFTTPVG

Sequences:

>Translated_224_residues
MATAPNPEPPYSILEEWLNGLTHGIGAALSIAGTVILVVAASLLGDPWKIVSFSIFGASLILLYSASALYHSLRNPKWRA
AFKMLDHCAIYCLIAGTYTPFLLVNLRGQTGWILFAVIWVLALTGIALKALYGHRFKLMRVGIYLAMGWLIVVASNDLTT
KLNDTGFWLILAGGITYTVGVIFYLADRFIPFNHAIWHLFVMGGSICHFLAVYYGVLPFTTPVG
>Mature_223_residues
ATAPNPEPPYSILEEWLNGLTHGIGAALSIAGTVILVVAASLLGDPWKIVSFSIFGASLILLYSASALYHSLRNPKWRAA
FKMLDHCAIYCLIAGTYTPFLLVNLRGQTGWILFAVIWVLALTGIALKALYGHRFKLMRVGIYLAMGWLIVVASNDLTTK
LNDTGFWLILAGGITYTVGVIFYLADRFIPFNHAIWHLFVMGGSICHFLAVYYGVLPFTTPVG

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Homo sapiens, GI154759275, Length=216, Percent_Identity=31.9444444444444, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI52630445, Length=210, Percent_Identity=30.952380952381, Blast_Score=90, Evalue=1e-18,
Organism=Homo sapiens, GI154759277, Length=240, Percent_Identity=30, Blast_Score=84, Evalue=1e-16,
Organism=Escherichia coli, GI1789266, Length=214, Percent_Identity=48.5981308411215, Blast_Score=191, Evalue=4e-50,
Organism=Caenorhabditis elegans, GI71996356, Length=168, Percent_Identity=35.7142857142857, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI24640324, Length=232, Percent_Identity=29.3103448275862, Blast_Score=78, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 24569; Mature: 24438

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATAPNPEPPYSILEEWLNGLTHGIGAALSIAGTVILVVAASLLGDPWKIVSFSIFGASL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
ILLYSASALYHSLRNPKWRAAFKMLDHCAIYCLIAGTYTPFLLVNLRGQTGWILFAVIWV
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHH
LALTGIALKALYGHRFKLMRVGIYLAMGWLIVVASNDLTTKLNDTGFWLILAGGITYTVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEECCCCEEEEEECCHHHHHH
VIFYLADRFIPFNHAIWHLFVMGGSICHFLAVYYGVLPFTTPVG
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ATAPNPEPPYSILEEWLNGLTHGIGAALSIAGTVILVVAASLLGDPWKIVSFSIFGASL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
ILLYSASALYHSLRNPKWRAAFKMLDHCAIYCLIAGTYTPFLLVNLRGQTGWILFAVIWV
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHH
LALTGIALKALYGHRFKLMRVGIYLAMGWLIVVASNDLTTKLNDTGFWLILAGGITYTVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEECCCCEEEEEECCHHHHHH
VIFYLADRFIPFNHAIWHLFVMGGSICHFLAVYYGVLPFTTPVG
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7495855 [H]