| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is comM [H]
Identifier: 110835393
GI number: 110835393
Start: 2870530
End: 2872026
Strand: Direct
Name: comM [H]
Synonym: ABO_2532
Alternate gene names: 110835393
Gene position: 2870530-2872026 (Clockwise)
Preceding gene: 110835392
Following gene: 110835399
Centisome position: 92.0
GC content: 61.52
Gene sequence:
>1497_bases GTGACGCATGCGCTGCTATACAGCCGGGCACCGGTAGGTATTGAAGCCCGCACCGTGCGGGTGGAAACCCATCTAGCTCC GGGTTTGCCGGCATTTACTATTGTCGGATTGGGCGATACCGCGGTACGCGAGAGCCGCGACCGAGTACGCTCTGCGCTGG TTAACAGCGGCTTCGATTTTCCCCAGCGGCGCATCACCGTGAGCTTGGCACCGGCGGATTTACCCAAGGACGGCGGTCGC TTCGACCTACCCATCGCGCTGGGTATTTTGCTGGCCAGCGGCCAATTGGGTCGCATCGACACAGACCCATTCGAATTTAT TGGCGAACTCTCCCTGAACGGTTCCCTTAGCCCGGTCCCGGCTATGCTTCCCTGTGCCCTGGCTTGCCAATCCACCGGCC GCACCCTGATCGTCCCCCGTGACAACGCCGACGAAGCGGCCCTCGCCGGGGCCGGCACCATCGCCGCCGACCAACTCGCA CACGTTGCTGCCCACCTGGCCGGGCAAACGCCGTTGCCGCTGCACCACTGTGACGCGCCACTGGCTGGGGTCTATCAAGG TGGCTGCCTCTCGGAGATCCGCGGCCAAGCCCACGCTAAACGGGTGCTGGAGATTGCCGCAGCTGGCGGACATTCCATGT TGCTCTGCGGACCGCCTGGTGCCGGCAAGAGCATGCTGGCATCCCGCTTACCCGGGCTGGTGCCGCCACTGAACCCGAAC CAGGCACTGGAAGTGGCCGCGATTTACTCTCTACGCCAGCCTCGTGACAGCAGCCTGTTTCATCAACGGCCTTACCGAGC CCCGCACCACACCGCGTCAGCAACCGCACTGGTAGGCGGCGGCAGCTACCCGCGACCAGGTGAAATATCCTTGGCCCACC ACGGCATTCTGTTTCTGGATGAATTACCGGAATTCGACCGACGGGTATTGGAGGTCTTGCGCGAACCGCTGGAAACCGGT GAAGTCAGCATTGCCCGCGCCGCCCAGCAGCTCACCTTCCCTGCCCGCTTCCAGTTGATTGCGGCGATGAACCCATGCCC CTGTGGTTATTTGGGTGATCCTGAAAAAAGTTGTGGCTACCGCTGTGAAAAAGCCAAACGCTATCAGAGCAAACTGTCCG GCCCGTTGCTGGATCGCATTGATCTGCACCTGGACGTGCCCGCCGTGGATGCCAGCGAACTTCTAGGAGATAAGCAGGGA GAGGCCAGCCACACGGTCCGCGAACGGGTTAAAGAAGCTTGGCGCCTGCAATGGTTGCGGCAAAAGCAACTGAACCGAGA ACTAAAAAACGACCAGTTGGAGCCTATGCTGCGCTCTCACCGTGATTGGTTAGCCGGCGTCATGCAGCGGCTGGGGTTGT CCGCTCGTGCCCTGCACCGCAGTGCACGGGTGGCGCGAACCATTGCCGACCTGCAGGGTAGCGACAACGTGGAGCGGGAC CACCTTCGCGAAGCGCTAAGTTACCGGCAAAACCTTCAGCAAAAACAGAGCTCCTAA
Upstream 100 bases:
>100_bases GCCCAGCCCTTTTCCTACAGCCAGCATCTACACCAGCCTACAGGCACCCTGACCCCCACCCCGTACACTGCTTCACAGCC CATTGAATTTGTGAGGTATC
Downstream 100 bases:
>100_bases CGCCCCTTTACGAAACGTCGCTACCGTACTGACGGCCAAAGCAGAAATTTTCTGCGATGGTTAACCACAACGCCACAACC GCAAGCGACGCGCATAGCAA
Product: magnesium chelatase-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 498; Mature: 497
Protein sequence:
>498_residues MTHALLYSRAPVGIEARTVRVETHLAPGLPAFTIVGLGDTAVRESRDRVRSALVNSGFDFPQRRITVSLAPADLPKDGGR FDLPIALGILLASGQLGRIDTDPFEFIGELSLNGSLSPVPAMLPCALACQSTGRTLIVPRDNADEAALAGAGTIAADQLA HVAAHLAGQTPLPLHHCDAPLAGVYQGGCLSEIRGQAHAKRVLEIAAAGGHSMLLCGPPGAGKSMLASRLPGLVPPLNPN QALEVAAIYSLRQPRDSSLFHQRPYRAPHHTASATALVGGGSYPRPGEISLAHHGILFLDELPEFDRRVLEVLREPLETG EVSIARAAQQLTFPARFQLIAAMNPCPCGYLGDPEKSCGYRCEKAKRYQSKLSGPLLDRIDLHLDVPAVDASELLGDKQG EASHTVRERVKEAWRLQWLRQKQLNRELKNDQLEPMLRSHRDWLAGVMQRLGLSARALHRSARVARTIADLQGSDNVERD HLREALSYRQNLQQKQSS
Sequences:
>Translated_498_residues MTHALLYSRAPVGIEARTVRVETHLAPGLPAFTIVGLGDTAVRESRDRVRSALVNSGFDFPQRRITVSLAPADLPKDGGR FDLPIALGILLASGQLGRIDTDPFEFIGELSLNGSLSPVPAMLPCALACQSTGRTLIVPRDNADEAALAGAGTIAADQLA HVAAHLAGQTPLPLHHCDAPLAGVYQGGCLSEIRGQAHAKRVLEIAAAGGHSMLLCGPPGAGKSMLASRLPGLVPPLNPN QALEVAAIYSLRQPRDSSLFHQRPYRAPHHTASATALVGGGSYPRPGEISLAHHGILFLDELPEFDRRVLEVLREPLETG EVSIARAAQQLTFPARFQLIAAMNPCPCGYLGDPEKSCGYRCEKAKRYQSKLSGPLLDRIDLHLDVPAVDASELLGDKQG EASHTVRERVKEAWRLQWLRQKQLNRELKNDQLEPMLRSHRDWLAGVMQRLGLSARALHRSARVARTIADLQGSDNVERD HLREALSYRQNLQQKQSS >Mature_497_residues THALLYSRAPVGIEARTVRVETHLAPGLPAFTIVGLGDTAVRESRDRVRSALVNSGFDFPQRRITVSLAPADLPKDGGRF DLPIALGILLASGQLGRIDTDPFEFIGELSLNGSLSPVPAMLPCALACQSTGRTLIVPRDNADEAALAGAGTIAADQLAH VAAHLAGQTPLPLHHCDAPLAGVYQGGCLSEIRGQAHAKRVLEIAAAGGHSMLLCGPPGAGKSMLASRLPGLVPPLNPNQ ALEVAAIYSLRQPRDSSLFHQRPYRAPHHTASATALVGGGSYPRPGEISLAHHGILFLDELPEFDRRVLEVLREPLETGE VSIARAAQQLTFPARFQLIAAMNPCPCGYLGDPEKSCGYRCEKAKRYQSKLSGPLLDRIDLHLDVPAVDASELLGDKQGE ASHTVRERVKEAWRLQWLRQKQLNRELKNDQLEPMLRSHRDWLAGVMQRLGLSARALHRSARVARTIADLQGSDNVERDH LREALSYRQNLQQKQSS
Specific function: Induced during competence development. Not needed for DNA uptake. May be involved in a recombination step [H]
COG id: COG0606
COG function: function code O; Predicted ATPase with chaperone activity
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily [H]
Homologues:
Organism=Escherichia coli, GI145693202, Length=495, Percent_Identity=47.8787878787879, Blast_Score=441, Evalue=1e-125,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR001208 - InterPro: IPR004482 - InterPro: IPR000523 - InterPro: IPR020568 [H]
Pfam domain/function: PF01078 Mg_chelatase [H]
EC number: NA
Molecular weight: Translated: 53988; Mature: 53857
Theoretical pI: Translated: 8.34; Mature: 8.34
Prosite motif: PS50051 MCM_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHALLYSRAPVGIEARTVRVETHLAPGLPAFTIVGLGDTAVRESRDRVRSALVNSGFDF CCCCEEECCCCCCCEEEEEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCC PQRRITVSLAPADLPKDGGRFDLPIALGILLASGQLGRIDTDPFEFIGELSLNGSLSPVP CCCEEEEEECCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCH AMLPCALACQSTGRTLIVPRDNADEAALAGAGTIAADQLAHVAAHLAGQTPLPLHHCDAP HHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCC LAGVYQGGCLSEIRGQAHAKRVLEIAAAGGHSMLLCGPPGAGKSMLASRLPGLVPPLNPN HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCC QALEVAAIYSLRQPRDSSLFHQRPYRAPHHTASATALVGGGSYPRPGEISLAHHGILFLD HHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCEEEECCCCCCCCCCEEEECCCEEEEH ELPEFDRRVLEVLREPLETGEVSIARAAQQLTFPARFQLIAAMNPCPCGYLGDPEKSCGY HCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHEEEEECCCCCCCCCCCCCHHHCC RCEKAKRYQSKLSGPLLDRIDLHLDVPAVDASELLGDKQGEASHTVRERVKEAWRLQWLR HHHHHHHHHHHHCCCCHHHEEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH QKQLNRELKNDQLEPMLRSHRDWLAGVMQRLGLSARALHRSARVARTIADLQGSDNVERD HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHH HLREALSYRQNLQQKQSS HHHHHHHHHHHHHHHHCC >Mature Secondary Structure THALLYSRAPVGIEARTVRVETHLAPGLPAFTIVGLGDTAVRESRDRVRSALVNSGFDF CCCEEECCCCCCCEEEEEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCC PQRRITVSLAPADLPKDGGRFDLPIALGILLASGQLGRIDTDPFEFIGELSLNGSLSPVP CCCEEEEEECCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCH AMLPCALACQSTGRTLIVPRDNADEAALAGAGTIAADQLAHVAAHLAGQTPLPLHHCDAP HHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCC LAGVYQGGCLSEIRGQAHAKRVLEIAAAGGHSMLLCGPPGAGKSMLASRLPGLVPPLNPN HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCC QALEVAAIYSLRQPRDSSLFHQRPYRAPHHTASATALVGGGSYPRPGEISLAHHGILFLD HHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCEEEECCCCCCCCCCEEEECCCEEEEH ELPEFDRRVLEVLREPLETGEVSIARAAQQLTFPARFQLIAAMNPCPCGYLGDPEKSCGY HCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHEEEEECCCCCCCCCCCCCHHHCC RCEKAKRYQSKLSGPLLDRIDLHLDVPAVDASELLGDKQGEASHTVRERVKEAWRLQWLR HHHHHHHHHHHHCCCCHHHEEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH QKQLNRELKNDQLEPMLRSHRDWLAGVMQRLGLSARALHRSARVARTIADLQGSDNVERD HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHH HLREALSYRQNLQQKQSS HHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800; 9457884 [H]