Definition Alcanivorax borkumensis SK2 chromosome, complete genome.
Accession NC_008260
Length 3,120,143

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The map label for this gene is comM [H]

Identifier: 110835393

GI number: 110835393

Start: 2870530

End: 2872026

Strand: Direct

Name: comM [H]

Synonym: ABO_2532

Alternate gene names: 110835393

Gene position: 2870530-2872026 (Clockwise)

Preceding gene: 110835392

Following gene: 110835399

Centisome position: 92.0

GC content: 61.52

Gene sequence:

>1497_bases
GTGACGCATGCGCTGCTATACAGCCGGGCACCGGTAGGTATTGAAGCCCGCACCGTGCGGGTGGAAACCCATCTAGCTCC
GGGTTTGCCGGCATTTACTATTGTCGGATTGGGCGATACCGCGGTACGCGAGAGCCGCGACCGAGTACGCTCTGCGCTGG
TTAACAGCGGCTTCGATTTTCCCCAGCGGCGCATCACCGTGAGCTTGGCACCGGCGGATTTACCCAAGGACGGCGGTCGC
TTCGACCTACCCATCGCGCTGGGTATTTTGCTGGCCAGCGGCCAATTGGGTCGCATCGACACAGACCCATTCGAATTTAT
TGGCGAACTCTCCCTGAACGGTTCCCTTAGCCCGGTCCCGGCTATGCTTCCCTGTGCCCTGGCTTGCCAATCCACCGGCC
GCACCCTGATCGTCCCCCGTGACAACGCCGACGAAGCGGCCCTCGCCGGGGCCGGCACCATCGCCGCCGACCAACTCGCA
CACGTTGCTGCCCACCTGGCCGGGCAAACGCCGTTGCCGCTGCACCACTGTGACGCGCCACTGGCTGGGGTCTATCAAGG
TGGCTGCCTCTCGGAGATCCGCGGCCAAGCCCACGCTAAACGGGTGCTGGAGATTGCCGCAGCTGGCGGACATTCCATGT
TGCTCTGCGGACCGCCTGGTGCCGGCAAGAGCATGCTGGCATCCCGCTTACCCGGGCTGGTGCCGCCACTGAACCCGAAC
CAGGCACTGGAAGTGGCCGCGATTTACTCTCTACGCCAGCCTCGTGACAGCAGCCTGTTTCATCAACGGCCTTACCGAGC
CCCGCACCACACCGCGTCAGCAACCGCACTGGTAGGCGGCGGCAGCTACCCGCGACCAGGTGAAATATCCTTGGCCCACC
ACGGCATTCTGTTTCTGGATGAATTACCGGAATTCGACCGACGGGTATTGGAGGTCTTGCGCGAACCGCTGGAAACCGGT
GAAGTCAGCATTGCCCGCGCCGCCCAGCAGCTCACCTTCCCTGCCCGCTTCCAGTTGATTGCGGCGATGAACCCATGCCC
CTGTGGTTATTTGGGTGATCCTGAAAAAAGTTGTGGCTACCGCTGTGAAAAAGCCAAACGCTATCAGAGCAAACTGTCCG
GCCCGTTGCTGGATCGCATTGATCTGCACCTGGACGTGCCCGCCGTGGATGCCAGCGAACTTCTAGGAGATAAGCAGGGA
GAGGCCAGCCACACGGTCCGCGAACGGGTTAAAGAAGCTTGGCGCCTGCAATGGTTGCGGCAAAAGCAACTGAACCGAGA
ACTAAAAAACGACCAGTTGGAGCCTATGCTGCGCTCTCACCGTGATTGGTTAGCCGGCGTCATGCAGCGGCTGGGGTTGT
CCGCTCGTGCCCTGCACCGCAGTGCACGGGTGGCGCGAACCATTGCCGACCTGCAGGGTAGCGACAACGTGGAGCGGGAC
CACCTTCGCGAAGCGCTAAGTTACCGGCAAAACCTTCAGCAAAAACAGAGCTCCTAA

Upstream 100 bases:

>100_bases
GCCCAGCCCTTTTCCTACAGCCAGCATCTACACCAGCCTACAGGCACCCTGACCCCCACCCCGTACACTGCTTCACAGCC
CATTGAATTTGTGAGGTATC

Downstream 100 bases:

>100_bases
CGCCCCTTTACGAAACGTCGCTACCGTACTGACGGCCAAAGCAGAAATTTTCTGCGATGGTTAACCACAACGCCACAACC
GCAAGCGACGCGCATAGCAA

Product: magnesium chelatase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 498; Mature: 497

Protein sequence:

>498_residues
MTHALLYSRAPVGIEARTVRVETHLAPGLPAFTIVGLGDTAVRESRDRVRSALVNSGFDFPQRRITVSLAPADLPKDGGR
FDLPIALGILLASGQLGRIDTDPFEFIGELSLNGSLSPVPAMLPCALACQSTGRTLIVPRDNADEAALAGAGTIAADQLA
HVAAHLAGQTPLPLHHCDAPLAGVYQGGCLSEIRGQAHAKRVLEIAAAGGHSMLLCGPPGAGKSMLASRLPGLVPPLNPN
QALEVAAIYSLRQPRDSSLFHQRPYRAPHHTASATALVGGGSYPRPGEISLAHHGILFLDELPEFDRRVLEVLREPLETG
EVSIARAAQQLTFPARFQLIAAMNPCPCGYLGDPEKSCGYRCEKAKRYQSKLSGPLLDRIDLHLDVPAVDASELLGDKQG
EASHTVRERVKEAWRLQWLRQKQLNRELKNDQLEPMLRSHRDWLAGVMQRLGLSARALHRSARVARTIADLQGSDNVERD
HLREALSYRQNLQQKQSS

Sequences:

>Translated_498_residues
MTHALLYSRAPVGIEARTVRVETHLAPGLPAFTIVGLGDTAVRESRDRVRSALVNSGFDFPQRRITVSLAPADLPKDGGR
FDLPIALGILLASGQLGRIDTDPFEFIGELSLNGSLSPVPAMLPCALACQSTGRTLIVPRDNADEAALAGAGTIAADQLA
HVAAHLAGQTPLPLHHCDAPLAGVYQGGCLSEIRGQAHAKRVLEIAAAGGHSMLLCGPPGAGKSMLASRLPGLVPPLNPN
QALEVAAIYSLRQPRDSSLFHQRPYRAPHHTASATALVGGGSYPRPGEISLAHHGILFLDELPEFDRRVLEVLREPLETG
EVSIARAAQQLTFPARFQLIAAMNPCPCGYLGDPEKSCGYRCEKAKRYQSKLSGPLLDRIDLHLDVPAVDASELLGDKQG
EASHTVRERVKEAWRLQWLRQKQLNRELKNDQLEPMLRSHRDWLAGVMQRLGLSARALHRSARVARTIADLQGSDNVERD
HLREALSYRQNLQQKQSS
>Mature_497_residues
THALLYSRAPVGIEARTVRVETHLAPGLPAFTIVGLGDTAVRESRDRVRSALVNSGFDFPQRRITVSLAPADLPKDGGRF
DLPIALGILLASGQLGRIDTDPFEFIGELSLNGSLSPVPAMLPCALACQSTGRTLIVPRDNADEAALAGAGTIAADQLAH
VAAHLAGQTPLPLHHCDAPLAGVYQGGCLSEIRGQAHAKRVLEIAAAGGHSMLLCGPPGAGKSMLASRLPGLVPPLNPNQ
ALEVAAIYSLRQPRDSSLFHQRPYRAPHHTASATALVGGGSYPRPGEISLAHHGILFLDELPEFDRRVLEVLREPLETGE
VSIARAAQQLTFPARFQLIAAMNPCPCGYLGDPEKSCGYRCEKAKRYQSKLSGPLLDRIDLHLDVPAVDASELLGDKQGE
ASHTVRERVKEAWRLQWLRQKQLNRELKNDQLEPMLRSHRDWLAGVMQRLGLSARALHRSARVARTIADLQGSDNVERDH
LREALSYRQNLQQKQSS

Specific function: Induced during competence development. Not needed for DNA uptake. May be involved in a recombination step [H]

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693202, Length=495, Percent_Identity=47.8787878787879, Blast_Score=441, Evalue=1e-125,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR001208
- InterPro:   IPR004482
- InterPro:   IPR000523
- InterPro:   IPR020568 [H]

Pfam domain/function: PF01078 Mg_chelatase [H]

EC number: NA

Molecular weight: Translated: 53988; Mature: 53857

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: PS50051 MCM_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHALLYSRAPVGIEARTVRVETHLAPGLPAFTIVGLGDTAVRESRDRVRSALVNSGFDF
CCCCEEECCCCCCCEEEEEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCC
PQRRITVSLAPADLPKDGGRFDLPIALGILLASGQLGRIDTDPFEFIGELSLNGSLSPVP
CCCEEEEEECCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCH
AMLPCALACQSTGRTLIVPRDNADEAALAGAGTIAADQLAHVAAHLAGQTPLPLHHCDAP
HHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCC
LAGVYQGGCLSEIRGQAHAKRVLEIAAAGGHSMLLCGPPGAGKSMLASRLPGLVPPLNPN
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCC
QALEVAAIYSLRQPRDSSLFHQRPYRAPHHTASATALVGGGSYPRPGEISLAHHGILFLD
HHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCEEEECCCCCCCCCCEEEECCCEEEEH
ELPEFDRRVLEVLREPLETGEVSIARAAQQLTFPARFQLIAAMNPCPCGYLGDPEKSCGY
HCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHEEEEECCCCCCCCCCCCCHHHCC
RCEKAKRYQSKLSGPLLDRIDLHLDVPAVDASELLGDKQGEASHTVRERVKEAWRLQWLR
HHHHHHHHHHHHCCCCHHHEEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
QKQLNRELKNDQLEPMLRSHRDWLAGVMQRLGLSARALHRSARVARTIADLQGSDNVERD
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHH
HLREALSYRQNLQQKQSS
HHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
THALLYSRAPVGIEARTVRVETHLAPGLPAFTIVGLGDTAVRESRDRVRSALVNSGFDF
CCCEEECCCCCCCEEEEEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCC
PQRRITVSLAPADLPKDGGRFDLPIALGILLASGQLGRIDTDPFEFIGELSLNGSLSPVP
CCCEEEEEECCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCH
AMLPCALACQSTGRTLIVPRDNADEAALAGAGTIAADQLAHVAAHLAGQTPLPLHHCDAP
HHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCC
LAGVYQGGCLSEIRGQAHAKRVLEIAAAGGHSMLLCGPPGAGKSMLASRLPGLVPPLNPN
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCC
QALEVAAIYSLRQPRDSSLFHQRPYRAPHHTASATALVGGGSYPRPGEISLAHHGILFLD
HHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCEEEECCCCCCCCCCEEEECCCEEEEH
ELPEFDRRVLEVLREPLETGEVSIARAAQQLTFPARFQLIAAMNPCPCGYLGDPEKSCGY
HCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHEEEEECCCCCCCCCCCCCHHHCC
RCEKAKRYQSKLSGPLLDRIDLHLDVPAVDASELLGDKQGEASHTVRERVKEAWRLQWLR
HHHHHHHHHHHHCCCCHHHEEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
QKQLNRELKNDQLEPMLRSHRDWLAGVMQRLGLSARALHRSARVARTIADLQGSDNVERD
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHH
HLREALSYRQNLQQKQSS
HHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800; 9457884 [H]