| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is serB [H]
Identifier: 110835303
GI number: 110835303
Start: 2764335
End: 2765570
Strand: Direct
Name: serB [H]
Synonym: ABO_2442
Alternate gene names: 110835303
Gene position: 2764335-2765570 (Clockwise)
Preceding gene: 110835300
Following gene: 110835307
Centisome position: 88.6
GC content: 55.74
Gene sequence:
>1236_bases GTGCGCGAGATCATTCTGATCCAGGTATCTGGTAATGACCGGCCGGGTTTGACCGCCGCCTTCACCGGCATTCTTGCCCG TTATCGGCTCAACATTCTGGATATCGGCCAGGCCGTCATCCACGACACCTTGTCGCTGGGGATTTTGGTGGAAACGCCTC AGGATGCTGACTCTTCATCAGTCCTCAAGGATCTGCTTTTCGAGGCGCACAAGCTGAATATCAATGTGCGCTTCCGGCCC ATCGACGAGGACCGCTACGAAGAGTGGGTCGCAGGCCAAGGCAAGGACCGCCATATCATCACCCTGCTAGCGCGCAAGAT CACCGCCGAGCAACTAGCCGATGTCACCACTACCGTGGCCGACAATGGACTCAACATTGATAGTATAGCTAGGCTATCTG GACGTGTTCACCTAGAAGGGGAAGCCCTTAACGAGGACAACCGCGCCTGCATTGAAATTTCCGTGCGCGGCGAACCCCAG AACGGTGAGGCTATGCGTGCAGCCTTCCTGAGCATTGCCAACGAACGCAACTTGGATATCGCTTTCCAGCGCGACAGTGC CTACCGGCGCAACCGGCGCTTGGTGGTATTCGATATGGATTCCACCCTGATTCGCTCCGAAGTGATCGACGAACTGGCGA CAGAAGCCGGCGTCGGCAAACAAGTGGCCGAGATTACCGAGCAGGCCATGCGCGGCGAGCTAGACTTTAATGAGAGCTTT AAAGCTCGCGTCGCCCTGCTTAAAGGCTTGGACGAAGGCGCCTTGGAACGAGTGCGTGAACGCATCCAGCTCACCGAAGG TGCTGAACGGTTAATCTCTACACTACGCGCCCTAGGCTACCGAACCGCCATCCTTTCCGGCGGTTTCACTTGGTTTGGGC AATGGCTACAAGAACTATTGGGGATTGATTATATCCACGCCAACGAGCTGGAAATCGAAAACGGCCAGGTCACGGGTCGG GTGGTAGGGCAGATCGTCAACGGCCAGCGCAAGGCGGAACTGTTAAGAGGTATCGCGGCTCAAGAAGGTATTAGCCTGGA ACAGGTTATCGCCGTAGGTGATGGTGCCAACGACCTACCCATGCTTGGTGAAGCAGGCCTGGGTATTGCTTTTCGCGCCA AGCCCTTGGTCAAACAGAATGCGGAACAGGCCATTTCCACCCTAGGTCTGGACGGCATTCTTTATTTAATCGGGGTACGC GACAAGGACCAAGCGGAACTATTGAAGGGTAACTGA
Upstream 100 bases:
>100_bases ACTCTTACATCGCCGTTTCGGCTCGAATACGACGCCGACTATCTAGCTAACATTTTTCACCTTCTGGCACTTTTTATTTT CTGGCACTGGGAGCCCACGC
Downstream 100 bases:
>100_bases GAATAGCTGAAACTCGATCGCGCTCGCCAGCTTAGGCCTGTGACTATAAGTGTAAGAGGCCGCGCCCATGTTTTGGGCGC GGCCTCTTACGTTGCACAAT
Product: phosphoserine phosphatase
Products: NA
Alternate protein names: PSP; PSPase; O-phosphoserine phosphohydrolase [H]
Number of amino acids: Translated: 411; Mature: 411
Protein sequence:
>411_residues MREIILIQVSGNDRPGLTAAFTGILARYRLNILDIGQAVIHDTLSLGILVETPQDADSSSVLKDLLFEAHKLNINVRFRP IDEDRYEEWVAGQGKDRHIITLLARKITAEQLADVTTTVADNGLNIDSIARLSGRVHLEGEALNEDNRACIEISVRGEPQ NGEAMRAAFLSIANERNLDIAFQRDSAYRRNRRLVVFDMDSTLIRSEVIDELATEAGVGKQVAEITEQAMRGELDFNESF KARVALLKGLDEGALERVRERIQLTEGAERLISTLRALGYRTAILSGGFTWFGQWLQELLGIDYIHANELEIENGQVTGR VVGQIVNGQRKAELLRGIAAQEGISLEQVIAVGDGANDLPMLGEAGLGIAFRAKPLVKQNAEQAISTLGLDGILYLIGVR DKDQAELLKGN
Sequences:
>Translated_411_residues MREIILIQVSGNDRPGLTAAFTGILARYRLNILDIGQAVIHDTLSLGILVETPQDADSSSVLKDLLFEAHKLNINVRFRP IDEDRYEEWVAGQGKDRHIITLLARKITAEQLADVTTTVADNGLNIDSIARLSGRVHLEGEALNEDNRACIEISVRGEPQ NGEAMRAAFLSIANERNLDIAFQRDSAYRRNRRLVVFDMDSTLIRSEVIDELATEAGVGKQVAEITEQAMRGELDFNESF KARVALLKGLDEGALERVRERIQLTEGAERLISTLRALGYRTAILSGGFTWFGQWLQELLGIDYIHANELEIENGQVTGR VVGQIVNGQRKAELLRGIAAQEGISLEQVIAVGDGANDLPMLGEAGLGIAFRAKPLVKQNAEQAISTLGLDGILYLIGVR DKDQAELLKGN >Mature_411_residues MREIILIQVSGNDRPGLTAAFTGILARYRLNILDIGQAVIHDTLSLGILVETPQDADSSSVLKDLLFEAHKLNINVRFRP IDEDRYEEWVAGQGKDRHIITLLARKITAEQLADVTTTVADNGLNIDSIARLSGRVHLEGEALNEDNRACIEISVRGEPQ NGEAMRAAFLSIANERNLDIAFQRDSAYRRNRRLVVFDMDSTLIRSEVIDELATEAGVGKQVAEITEQAMRGELDFNESF KARVALLKGLDEGALERVRERIQLTEGAERLISTLRALGYRTAILSGGFTWFGQWLQELLGIDYIHANELEIENGQVTGR VVGQIVNGQRKAELLRGIAAQEGISLEQVIAVGDGANDLPMLGEAGLGIAFRAKPLVKQNAEQAISTLGLDGILYLIGVR DKDQAELLKGN
Specific function: Unknown
COG id: COG0560
COG function: function code E; Phosphoserine phosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the serB family [H]
Homologues:
Organism=Homo sapiens, GI46249388, Length=200, Percent_Identity=31.5, Blast_Score=73, Evalue=5e-13, Organism=Escherichia coli, GI1790849, Length=226, Percent_Identity=48.2300884955752, Blast_Score=206, Evalue=3e-54, Organism=Caenorhabditis elegans, GI115534456, Length=189, Percent_Identity=32.8042328042328, Blast_Score=79, Evalue=5e-15, Organism=Caenorhabditis elegans, GI115534454, Length=189, Percent_Identity=32.8042328042328, Blast_Score=78, Evalue=7e-15, Organism=Caenorhabditis elegans, GI115534458, Length=191, Percent_Identity=32.4607329842932, Blast_Score=74, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6321647, Length=312, Percent_Identity=36.2179487179487, Blast_Score=191, Evalue=1e-49, Organism=Drosophila melanogaster, GI24661601, Length=223, Percent_Identity=28.6995515695067, Blast_Score=79, Evalue=5e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006383 - InterPro: IPR023190 - InterPro: IPR004469 [H]
Pfam domain/function: PF01842 ACT; PF00702 Hydrolase [H]
EC number: =3.1.3.3 [H]
Molecular weight: Translated: 45199; Mature: 45199
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: PS00228 TUBULIN_B_AUTOREG
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MREIILIQVSGNDRPGLTAAFTGILARYRLNILDIGQAVIHDTLSLGILVETPQDADSSS CCEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEEEEECCCCCCHHH VLKDLLFEAHKLNINVRFRPIDEDRYEEWVAGQGKDRHIITLLARKITAEQLADVTTTVA HHHHHHHHHHEEEEEEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC DNGLNIDSIARLSGRVHLEGEALNEDNRACIEISVRGEPQNGEAMRAAFLSIANERNLDI CCCCCHHHHHHHCCEEEEECCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCEE AFQRDSAYRRNRRLVVFDMDSTLIRSEVIDELATEAGVGKQVAEITEQAMRGELDFNESF EEECCCHHHHCCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHH KARVALLKGLDEGALERVRERIQLTEGAERLISTLRALGYRTAILSGGFTWFGQWLQELL HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH GIDYIHANELEIENGQVTGRVVGQIVNGQRKAELLRGIAAQEGISLEQVIAVGDGANDLP CCCEEECCCEEECCCEEHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHEEEECCCCCCCC MLGEAGLGIAFRAKPLVKQNAEQAISTLGLDGILYLIGVRDKDQAELLKGN CCCCCCCCEEEECCHHHHCCHHHHHHHHCCCCEEEEEECCCCCHHHHCCCC >Mature Secondary Structure MREIILIQVSGNDRPGLTAAFTGILARYRLNILDIGQAVIHDTLSLGILVETPQDADSSS CCEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEEEEECCCCCCHHH VLKDLLFEAHKLNINVRFRPIDEDRYEEWVAGQGKDRHIITLLARKITAEQLADVTTTVA HHHHHHHHHHEEEEEEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC DNGLNIDSIARLSGRVHLEGEALNEDNRACIEISVRGEPQNGEAMRAAFLSIANERNLDI CCCCCHHHHHHHCCEEEEECCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCEE AFQRDSAYRRNRRLVVFDMDSTLIRSEVIDELATEAGVGKQVAEITEQAMRGELDFNESF EEECCCHHHHCCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHH KARVALLKGLDEGALERVRERIQLTEGAERLISTLRALGYRTAILSGGFTWFGQWLQELL HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH GIDYIHANELEIENGQVTGRVVGQIVNGQRKAELLRGIAAQEGISLEQVIAVGDGANDLP CCCEEECCCEEECCCEEHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHEEEECCCCCCCC MLGEAGLGIAFRAKPLVKQNAEQAISTLGLDGILYLIGVRDKDQAELLKGN CCCCCCCCEEEECCHHHHCCHHHHHHHHCCCCEEEEEECCCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA