| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110835115
Identifier: 110835115
GI number: 110835115
Start: 2573496
End: 2575319
Strand: Reverse
Name: 110835115
Synonym: ABO_2254
Alternate gene names: NA
Gene position: 2575319-2573496 (Counterclockwise)
Preceding gene: 110835116
Following gene: 110835114
Centisome position: 82.54
GC content: 54.5
Gene sequence:
>1824_bases ATGCGCACTGGCCTTTTCTGTGTGCTGCTGTGCTGGTTTGTGCCGGCGTTTGCTGCAACTTCTTCCTTTTCTACGCTGGC AGACATGCCCCGCTGGCAGGCGTTATTGCATATCAATCCTGGTGCTACCCTGCGTGACAAGCACCAGAGTTACGTGGATG ACGACCGCTTTTTTTTGGCTGACTCAGGGAAGATAGATCCGCTAGCGGAGCTGGAAGCGACTGAGCAGGCTCTTCGCCCA GCCGGGGCGCCTGCGCGATGCCGTTTCCCTGCGCGTTATCGTTTCTTATCCGAAAAACTGGGTTGGCAGAATGAGTCGCC GTTTTCACACTGCGATGATTACAATGAATGGCGGGATGCGATTCATGCTAACCGTGCGGTGTTGGTTTTTCCTGCCGCTT ATTTGAATAGCCCTTCATCCATGTTTGGGCATACCTTGCTGCGACTGGATCAGGGCGAAGACAGTGCCGTCTGGTTGTCA TGGGCTGTCAATTTCGGGGCGGTTTCATCCGACTCCGATAACTCTTTTTTCTATATTTATCGCGGTTTGGCGGGCGGTTA TCCGGGTCGCTTTGCGCTGGTGCCCTATGTGCAGAAAATTCAGGAATATTCGCACATGGAAAACCGGGATATGTGGGAAT ACACCCTGGATCTGGATCAGTCTGAAATCGACTGGCTGATCGATCATCTCTGGGAACTCAAAGAGATCAATTTTGATTAC TACTTCTTTGATGAGAATTGCTCATTTCGTTTGCTTGAGCTGGTGGAAGTGGCACGCCCGGGCTCCGGGTTGTTAAGTGA GTTGAGGTTTGCCGAAGTGCCTGTCAACACAGTGCGAGCGCTGGATGAGCGGGAGATCATTAGCCGCCGGTATTATCGGC CTTCCAAGTCCGTTGAGCTGGATAATCTGCGTCTGCAGCTCAATGCTTCCCAGCAAAAACTGGCAAGAGCGCTGGCCGAT GATCCCGGCCTGGCCAAGTCGTCAGCTTTTTTGGCTGAACCTGCAGAAACACGAGCGATTATGGCGGCGGTGGCTTATCG CTACATCAGGCTTACCCACCGCAAGGAACAGCGAACGCCAGCGGTGGCGAAACGCTCGTTTACGCTGCTGACTCTAATCA ATAGTCTGCCGGCAGTGCCGGTACCCGAAACCGAGCACCCCGAGCCACCGGAAAAGGGGCATGGCACCCAGATGTTGGGC GTTAGCGGTGGCCAACGTGAAGGTGAGCTGGATTTTGGTGAGCTGACCTACCGGTTGACCTACCATGATTTGCTCGACAA CCAATACGGCTTCCTGCGTGGCGCACAGATCGAAGGGTTGGATATGACTCTGCGCAGCACTGAGTCTGGCCAGGTCAAAT TGGAAGAGCTGGATGTGGTCAGTATTCGGTCCCTAGCGCCACGAAATCGCTTCATGAAGCCATTAAGCTGGTATGTAGAG GGAGGTTTGGAGCGGACTTGGGCGGGGCGTCGCCGGTTGGTGCGCTATATGCAAGGAGGTGCTGGCGGAAGCTGGCTGTG GAGGAACTGGCAGCCGTATCTGTTAACCAGCGTGCGAATGGAGAATAATAGCGAGTTCGGCACCTTCCTGACCCCGGGGG CCGGTCTAGACACGGGTATTGTTTATCACCGTGGCGACTGGCAGTGGCAGTTAGGCGGAGTGGGGCACTATTTCACCAAC GATGAATATCGATACACCTCCCAGTTTGCGGTGCAGTGGGCAATGACCCGCCAGCATGGCTTGCGCGCTTCTCTTGCGCG TGAGAACCGCAGGGGCGGTTATGATGATGAGTTCAAACTCCAATGGCGATGGTATTACGATTAA
Upstream 100 bases:
>100_bases AAAGACCGAGACAGAACCCCGCTTTTGGCGGGGTTTCGTTTTTCTGATCCTTCTTTTCTGACATTCTTGTCAGCTTGCTA ATTTAGACGGATGAATCCGG
Downstream 100 bases:
>100_bases GCACAGCGCTTCTGCTGAGCCTGCTGCTGGTAGGGTGTAGCAAGCTGTTTTTCTACCCCATGTCTGCGTGGGTGCAGAAC CCAGAAAACCAAGGGCTGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 607; Mature: 607
Protein sequence:
>607_residues MRTGLFCVLLCWFVPAFAATSSFSTLADMPRWQALLHINPGATLRDKHQSYVDDDRFFLADSGKIDPLAELEATEQALRP AGAPARCRFPARYRFLSEKLGWQNESPFSHCDDYNEWRDAIHANRAVLVFPAAYLNSPSSMFGHTLLRLDQGEDSAVWLS WAVNFGAVSSDSDNSFFYIYRGLAGGYPGRFALVPYVQKIQEYSHMENRDMWEYTLDLDQSEIDWLIDHLWELKEINFDY YFFDENCSFRLLELVEVARPGSGLLSELRFAEVPVNTVRALDEREIISRRYYRPSKSVELDNLRLQLNASQQKLARALAD DPGLAKSSAFLAEPAETRAIMAAVAYRYIRLTHRKEQRTPAVAKRSFTLLTLINSLPAVPVPETEHPEPPEKGHGTQMLG VSGGQREGELDFGELTYRLTYHDLLDNQYGFLRGAQIEGLDMTLRSTESGQVKLEELDVVSIRSLAPRNRFMKPLSWYVE GGLERTWAGRRRLVRYMQGGAGGSWLWRNWQPYLLTSVRMENNSEFGTFLTPGAGLDTGIVYHRGDWQWQLGGVGHYFTN DEYRYTSQFAVQWAMTRQHGLRASLARENRRGGYDDEFKLQWRWYYD
Sequences:
>Translated_607_residues MRTGLFCVLLCWFVPAFAATSSFSTLADMPRWQALLHINPGATLRDKHQSYVDDDRFFLADSGKIDPLAELEATEQALRP AGAPARCRFPARYRFLSEKLGWQNESPFSHCDDYNEWRDAIHANRAVLVFPAAYLNSPSSMFGHTLLRLDQGEDSAVWLS WAVNFGAVSSDSDNSFFYIYRGLAGGYPGRFALVPYVQKIQEYSHMENRDMWEYTLDLDQSEIDWLIDHLWELKEINFDY YFFDENCSFRLLELVEVARPGSGLLSELRFAEVPVNTVRALDEREIISRRYYRPSKSVELDNLRLQLNASQQKLARALAD DPGLAKSSAFLAEPAETRAIMAAVAYRYIRLTHRKEQRTPAVAKRSFTLLTLINSLPAVPVPETEHPEPPEKGHGTQMLG VSGGQREGELDFGELTYRLTYHDLLDNQYGFLRGAQIEGLDMTLRSTESGQVKLEELDVVSIRSLAPRNRFMKPLSWYVE GGLERTWAGRRRLVRYMQGGAGGSWLWRNWQPYLLTSVRMENNSEFGTFLTPGAGLDTGIVYHRGDWQWQLGGVGHYFTN DEYRYTSQFAVQWAMTRQHGLRASLARENRRGGYDDEFKLQWRWYYD >Mature_607_residues MRTGLFCVLLCWFVPAFAATSSFSTLADMPRWQALLHINPGATLRDKHQSYVDDDRFFLADSGKIDPLAELEATEQALRP AGAPARCRFPARYRFLSEKLGWQNESPFSHCDDYNEWRDAIHANRAVLVFPAAYLNSPSSMFGHTLLRLDQGEDSAVWLS WAVNFGAVSSDSDNSFFYIYRGLAGGYPGRFALVPYVQKIQEYSHMENRDMWEYTLDLDQSEIDWLIDHLWELKEINFDY YFFDENCSFRLLELVEVARPGSGLLSELRFAEVPVNTVRALDEREIISRRYYRPSKSVELDNLRLQLNASQQKLARALAD DPGLAKSSAFLAEPAETRAIMAAVAYRYIRLTHRKEQRTPAVAKRSFTLLTLINSLPAVPVPETEHPEPPEKGHGTQMLG VSGGQREGELDFGELTYRLTYHDLLDNQYGFLRGAQIEGLDMTLRSTESGQVKLEELDVVSIRSLAPRNRFMKPLSWYVE GGLERTWAGRRRLVRYMQGGAGGSWLWRNWQPYLLTSVRMENNSEFGTFLTPGAGLDTGIVYHRGDWQWQLGGVGHYFTN DEYRYTSQFAVQWAMTRQHGLRASLARENRRGGYDDEFKLQWRWYYD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69812; Mature: 69812
Theoretical pI: Translated: 6.05; Mature: 6.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTGLFCVLLCWFVPAFAATSSFSTLADMPRWQALLHINPGATLRDKHQSYVDDDRFFLA CCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEEEEECCCCCCHHHHHHHCCCCCEEEE DSGKIDPLAELEATEQALRPAGAPARCRFPARYRFLSEKLGWQNESPFSHCDDYNEWRDA CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH IHANRAVLVFPAAYLNSPSSMFGHTLLRLDQGEDSAVWLSWAVNFGAVSSDSDNSFFYIY HHCCCEEEEEEHHHHCCCHHHHHHEEEEEECCCCCEEEEEEEEECCCCCCCCCCCEEEEE RGLAGGYPGRFALVPYVQKIQEYSHMENRDMWEYTLDLDQSEIDWLIDHLWELKEINFDY ECCCCCCCCCEEHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCEE YFFDENCSFRLLELVEVARPGSGLLSELRFAEVPVNTVRALDEREIISRRYYRPSKSVEL EEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEE DNLRLQLNASQQKLARALADDPGLAKSSAFLAEPAETRAIMAAVAYRYIRLTHRKEQRTP CCEEEEECCCHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC AVAKRSFTLLTLINSLPAVPVPETEHPEPPEKGHGTQMLGVSGGQREGELDFGELTYRLT HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHEEEEEE YHDLLDNQYGFLRGAQIEGLDMTLRSTESGQVKLEELDVVSIRSLAPRNRFMKPLSWYVE HHHHHCCCCCCEECCEECCCEEEEECCCCCCEEEEEECEEHHHHCCCHHHHHHHHHHHHH GGLERTWAGRRRLVRYMQGGAGGSWLWRNWQPYLLTSVRMENNSEFGTFLTPGAGLDTGI CCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCEEEEEEEECCCCCCCCEECCCCCCCCCE VYHRGDWQWQLGGVGHYFTNDEYRYTSQFAVQWAMTRQHGLRASLARENRRGGYDDEFKL EEECCCCEEEECCEEEEECCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEE QWRWYYD EEEEECC >Mature Secondary Structure MRTGLFCVLLCWFVPAFAATSSFSTLADMPRWQALLHINPGATLRDKHQSYVDDDRFFLA CCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEEEEECCCCCCHHHHHHHCCCCCEEEE DSGKIDPLAELEATEQALRPAGAPARCRFPARYRFLSEKLGWQNESPFSHCDDYNEWRDA CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH IHANRAVLVFPAAYLNSPSSMFGHTLLRLDQGEDSAVWLSWAVNFGAVSSDSDNSFFYIY HHCCCEEEEEEHHHHCCCHHHHHHEEEEEECCCCCEEEEEEEEECCCCCCCCCCCEEEEE RGLAGGYPGRFALVPYVQKIQEYSHMENRDMWEYTLDLDQSEIDWLIDHLWELKEINFDY ECCCCCCCCCEEHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCEE YFFDENCSFRLLELVEVARPGSGLLSELRFAEVPVNTVRALDEREIISRRYYRPSKSVEL EEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEE DNLRLQLNASQQKLARALADDPGLAKSSAFLAEPAETRAIMAAVAYRYIRLTHRKEQRTP CCEEEEECCCHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC AVAKRSFTLLTLINSLPAVPVPETEHPEPPEKGHGTQMLGVSGGQREGELDFGELTYRLT HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHEEEEEE YHDLLDNQYGFLRGAQIEGLDMTLRSTESGQVKLEELDVVSIRSLAPRNRFMKPLSWYVE HHHHHCCCCCCEECCEECCCEEEEECCCCCCEEEEEECEEHHHHCCCHHHHHHHHHHHHH GGLERTWAGRRRLVRYMQGGAGGSWLWRNWQPYLLTSVRMENNSEFGTFLTPGAGLDTGI CCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCEEEEEEEECCCCCCCCEECCCCCCCCCE VYHRGDWQWQLGGVGHYFTNDEYRYTSQFAVQWAMTRQHGLRASLARENRRGGYDDEFKL EEECCCCEEEECCEEEEECCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEE QWRWYYD EEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA