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The map label for this gene is rhaS [C]

Identifier: 110834967

GI number: 110834967

Start: 2412124

End: 2413128

Strand: Reverse

Name: rhaS [C]

Synonym: ABO_2106

Alternate gene names: 110834967

Gene position: 2413128-2412124 (Counterclockwise)

Preceding gene: 110834971

Following gene: 110834963

Centisome position: 77.34

GC content: 57.81

Gene sequence:

>1005_bases
ATGGCGGTACAGAGAGCGATAACCAGCGTGCGGATGCAGGTGGCCTTTGCCGAAGAGCAAGGCGTGCCGGCCTCTGTGTG
TCTGCACAATTCGGGGATTGATTTGGCGATGCTGGGCCAAGCAGATTGCACTATTGGTGCGGAACAGGAGCTCACGGTGG
TACGCAACTTGTGCCGGGCTCTGGGCAACCATGCAGAGCTAGGCTTAGCCATGGGGCAGCGTTACCACCTGAGTAGCTAT
GGAGTATGGGGGTTTGCGTTGTTGAGTAGCCCCACCTTTCGTCAGGCTGTTGAGCTGGGGCTGCGCTACCTAGACTTAAC
ATTTGCTTTTCTGGATGTCTCTCTCCAGCAGGAGGGGAATGATGCCTTGCTGATTTTGGATGACAGTGGCGTGCCGGAAG
AGGTTCGCGAGTATCTGTTGGCCCGGGATGCCAGTGCGGTGATGATGATTCAGGAAGAGTTGTTTGCCGGGCGGGTTCCC
TTGTCTTCACTGGAAATACGGTTGCCGCCGCGAACGGCGGCCACCTTCGAATCTATTTTTGGACTGGTGCCGGAATTTGG
TCGTCCTCGTAGTCAGGCGCGTTTTGCTCTGGGCCTGCTTGATATGCCACTGCCCCAAGCCAACCCGGTCACGGCGCGTT
TATGTGAAGAGCAGTGTCACCAGTTATTGGTGCAGCGTTATCGCAAGGGCAGCGTGGCGGCGCAGGTGCGTCGGCGGTTA
TTACAACAGCCGGGTCGCTTTCCGGATATGGAGGCGATGGCACAGGAGCTGGCGATCACCAGTCGTACCTTACGCCGTCA
TCTGCAAGCGGAGGGTACAGGTTATCGGATGTTGTTGGATGAAGTTCGGCAGATGCTGGCGGAGCAATGGCTCACTCTTG
GCATCCTCAGCCTGACTGAAATCAGCGAACGTCTGGGCTTTTCGGAGATAGCCAACTTCAACCATGCCTTCCGCCGCTGG
ACCGGGCAGAGCCCGGGCAGGTTCCGCCGTGAGCGGCAGGGATGA

Upstream 100 bases:

>100_bases
TGGGAAACAATCCGGTTAATAACGTTGCCATCCACTCTAGCGATACATAAACGCTTTGTTTATGGCATTCTGGGACATAA
ATTTGTGAAATACGGACATT

Downstream 100 bases:

>100_bases
TGGGTTCTACCATGACAGCCATTCTTAACAGCGCTGTTGTGCTTGTTGAGCTTTGTGACGGCGGAGATAAGCCCGTTTTT
TTTATGGCATTGCGGGTAGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MAVQRAITSVRMQVAFAEEQGVPASVCLHNSGIDLAMLGQADCTIGAEQELTVVRNLCRALGNHAELGLAMGQRYHLSSY
GVWGFALLSSPTFRQAVELGLRYLDLTFAFLDVSLQQEGNDALLILDDSGVPEEVREYLLARDASAVMMIQEELFAGRVP
LSSLEIRLPPRTAATFESIFGLVPEFGRPRSQARFALGLLDMPLPQANPVTARLCEEQCHQLLVQRYRKGSVAAQVRRRL
LQQPGRFPDMEAMAQELAITSRTLRRHLQAEGTGYRMLLDEVRQMLAEQWLTLGILSLTEISERLGFSEIANFNHAFRRW
TGQSPGRFRRERQG

Sequences:

>Translated_334_residues
MAVQRAITSVRMQVAFAEEQGVPASVCLHNSGIDLAMLGQADCTIGAEQELTVVRNLCRALGNHAELGLAMGQRYHLSSY
GVWGFALLSSPTFRQAVELGLRYLDLTFAFLDVSLQQEGNDALLILDDSGVPEEVREYLLARDASAVMMIQEELFAGRVP
LSSLEIRLPPRTAATFESIFGLVPEFGRPRSQARFALGLLDMPLPQANPVTARLCEEQCHQLLVQRYRKGSVAAQVRRRL
LQQPGRFPDMEAMAQELAITSRTLRRHLQAEGTGYRMLLDEVRQMLAEQWLTLGILSLTEISERLGFSEIANFNHAFRRW
TGQSPGRFRRERQG
>Mature_333_residues
AVQRAITSVRMQVAFAEEQGVPASVCLHNSGIDLAMLGQADCTIGAEQELTVVRNLCRALGNHAELGLAMGQRYHLSSYG
VWGFALLSSPTFRQAVELGLRYLDLTFAFLDVSLQQEGNDALLILDDSGVPEEVREYLLARDASAVMMIQEELFAGRVPL
SSLEIRLPPRTAATFESIFGLVPEFGRPRSQARFALGLLDMPLPQANPVTARLCEEQCHQLLVQRYRKGSVAAQVRRRLL
QQPGRFPDMEAMAQELAITSRTLRRHLQAEGTGYRMLLDEVRQMLAEQWLTLGILSLTEISERLGFSEIANFNHAFRRWT
GQSPGRFRRERQG

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37387; Mature: 37255

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVQRAITSVRMQVAFAEEQGVPASVCLHNSGIDLAMLGQADCTIGAEQELTVVRNLCRA
CCHHHHHHHHHHHHEEHHCCCCCCEEEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHH
LGNHAELGLAMGQRYHLSSYGVWGFALLSSPTFRQAVELGLRYLDLTFAFLDVSLQQEGN
HCCCHHHHHHHCCEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DALLILDDSGVPEEVREYLLARDASAVMMIQEELFAGRVPLSSLEIRLPPRTAATFESIF
CEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHH
GLVPEFGRPRSQARFALGLLDMPLPQANPVTARLCEEQCHQLLVQRYRKGSVAAQVRRRL
HHCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LQQPGRFPDMEAMAQELAITSRTLRRHLQAEGTGYRMLLDEVRQMLAEQWLTLGILSLTE
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ISERLGFSEIANFNHAFRRWTGQSPGRFRRERQG
HHHHCCHHHHHHHHHHHHHHCCCCCHHHHHCCCC
>Mature Secondary Structure 
AVQRAITSVRMQVAFAEEQGVPASVCLHNSGIDLAMLGQADCTIGAEQELTVVRNLCRA
CHHHHHHHHHHHHEEHHCCCCCCEEEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHH
LGNHAELGLAMGQRYHLSSYGVWGFALLSSPTFRQAVELGLRYLDLTFAFLDVSLQQEGN
HCCCHHHHHHHCCEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DALLILDDSGVPEEVREYLLARDASAVMMIQEELFAGRVPLSSLEIRLPPRTAATFESIF
CEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHH
GLVPEFGRPRSQARFALGLLDMPLPQANPVTARLCEEQCHQLLVQRYRKGSVAAQVRRRL
HHCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LQQPGRFPDMEAMAQELAITSRTLRRHLQAEGTGYRMLLDEVRQMLAEQWLTLGILSLTE
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ISERLGFSEIANFNHAFRRWTGQSPGRFRRERQG
HHHHCCHHHHHHHHHHHHHHCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036; 12368430 [H]