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The map label for this gene is cyoD [H]

Identifier: 110834895

GI number: 110834895

Start: 2321438

End: 2321833

Strand: Reverse

Name: cyoD [H]

Synonym: ABO_2034

Alternate gene names: 110834895

Gene position: 2321833-2321438 (Counterclockwise)

Preceding gene: 110834896

Following gene: 110834894

Centisome position: 74.41

GC content: 50.76

Gene sequence:

>396_bases
ATGAGCGAGCATACACACGATCATGATCATAACGACGCGGACATTCCCCACGTTTCCTTGAAGGAATATGCCACCGGGTT
TGTGCTGGCGGTAATTCTTACGGTGATTCCGTTCTGGTTGGTGATGGGCGGCGTATTCGAAAGCTCTGCCACCACGGTGA
TGGTGATTTTGGGTTTTGCGTTAGTGCAGATTGTGGTGCATATGGTGTTCTTCCTGCACATGAACTTCCATTCGGAAGGG
GGCTGGAACATGCTGGCGCTGATGTTTACGTTGATTCTGGTATTTATTACCTTGGCCGGTTCACTGTGGGTAATGCATAA
CCTGAATGTAAACATGATGCCCGGGATGATGGAGGGGGCGTCTCTGCATTCCCCCTTGCATGCTCAGGCATGCTGA

Upstream 100 bases:

>100_bases
AAAACAAGCGCCGGGTGTTCTGCCTGTCCATGTTCTGGCACTTCCTGGACGTGGTTTGGGTTGGCGTGTTCACTTACGTT
TATCTGATGGGAGTGCTGCC

Downstream 100 bases:

>100_bases
CCCGAGGGCGCAATAGGCACTTCCGACCACGCTGAGCAAGCAAGGGGGCATGCACGCCCCGGTCGCAACACCTCACACGC
ACTCATGCGTAGGGCGGAGA

Product: cytochrome o ubiquinol oxidase, protein CyoD

Products: Ubiquinone-8; H2O [C]

Alternate protein names: Ubiquinol oxidase chain D [H]

Number of amino acids: Translated: 131; Mature: 130

Protein sequence:

>131_residues
MSEHTHDHDHNDADIPHVSLKEYATGFVLAVILTVIPFWLVMGGVFESSATTVMVILGFALVQIVVHMVFFLHMNFHSEG
GWNMLALMFTLILVFITLAGSLWVMHNLNVNMMPGMMEGASLHSPLHAQAC

Sequences:

>Translated_131_residues
MSEHTHDHDHNDADIPHVSLKEYATGFVLAVILTVIPFWLVMGGVFESSATTVMVILGFALVQIVVHMVFFLHMNFHSEG
GWNMLALMFTLILVFITLAGSLWVMHNLNVNMMPGMMEGASLHSPLHAQAC
>Mature_130_residues
SEHTHDHDHNDADIPHVSLKEYATGFVLAVILTVIPFWLVMGGVFESSATTVMVILGFALVQIVVHMVFFLHMNFHSEGG
WNMLALMFTLILVFITLAGSLWVMHNLNVNMMPGMMEGASLHSPLHAQAC

Specific function: Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration [H]

COG id: COG3125

COG function: function code C; Heme/copper-type cytochrome/quinol oxidase, subunit 4

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase bacterial subunit 4 family [H]

Homologues:

Organism=Escherichia coli, GI1786632, Length=109, Percent_Identity=52.2935779816514, Blast_Score=109, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005171
- InterPro:   IPR014210 [H]

Pfam domain/function: PF03626 COX4_pro [H]

EC number: NA

Molecular weight: Translated: 14532; Mature: 14401

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
9.2 %Met     (Translated Protein)
9.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
8.5 %Met     (Mature Protein)
9.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEHTHDHDHNDADIPHVSLKEYATGFVLAVILTVIPFWLVMGGVFESSATTVMVILGFA
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LVQIVVHMVFFLHMNFHSEGGWNMLALMFTLILVFITLAGSLWVMHNLNVNMMPGMMEGA
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
SLHSPLHAQAC
CCCCCCCCCCC
>Mature Secondary Structure 
SEHTHDHDHNDADIPHVSLKEYATGFVLAVILTVIPFWLVMGGVFESSATTVMVILGFA
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LVQIVVHMVFFLHMNFHSEGGWNMLALMFTLILVFITLAGSLWVMHNLNVNMMPGMMEGA
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
SLHSPLHAQAC
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ubiquinol-8; O(2) [C]

Specific reaction: Ubiquinol-8 + O(2) = Ubiquinone-8 + H2O [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]